mRNA_M-pyrifera_M_contig1211.4345.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: A0A6H5KH12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH12_9PHAE) HSP 1 Score: 412 bits (1058), Expect = 1.050e-133 Identity = 275/483 (56.94%), Postives = 327/483 (67.70%), Query Frame = 1
Query: 514 TLVGAARCSTSKWVRLSHSDPRPKDRGH-EHSAG-GMYDIHRADLLIRPATTSYSIGGGKTPGSDPATQGVSRNTPGAIYNPNIGSSRATASAARFSPSDRFAARSSAFITPGPG-HYSP-GEEESSNRKA-AGAVAWTGADTFMDSEWCRPARPTYLHSWRGFGHGCNMDEHIGYGACLDGLCCTRHSIEKRNALRVVQFRGQTGKSRRDSRRRRSDRSEN--HHLGSPLSRSGKENQPVGGTSSSNAVPAGKPRGQLAGSSLSLTRSSHRERTPLHFASERGELSLVDRLCSQGDDRNAVDERGYXXXXXXXXXXXXXXXXXXXXREEDEIRAPPTRTTA---VAP----QGPADADAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRGKPAQEVAGQQKVYQLLQFKADVSLMKANIAALEERKQSADRLRQDAARASTQNELEELKREELRLRALIVAVEKKRRAYTAATDS 1920
T GA S+S VRLS+++PRPKD G +HSAG G+YDI AD ++ S GGG G + A G SR+TPGAIY+PNIG S A A FSP+ RF F T GPG +Y+P G S+ R A +G VAWTG DTF DSEW + P L W+GFG+GC++ EHI YGACLDG CC+RHSIEK+NAL VVQF R RRS +S H SP SRS + G S ++ G G+LA S R++ R+RTPLHFASERGELSLVDRLC QGDDRNAVDERG+XXXXXXXXXXXXXXXXXXX +++ P TA AP Q PAD + QD++GRTPLYLAC RGHER VRALLKAGA PDLVDIRGKPAQEVAG Q +YQLLQFKADVSL+KANIAALE R+++ +R R+ A+A+ EL ELK EELRL+A + A+E KR AY AA ++
Sbjct: 61 TRPGARSSSSSNGVRLSYNNPRPKDVGSSKHSAGDGIYDIALADKVVMRTAPSCFFGGGMASGDESAVPGASRDTPGAIYDPNIGGSSAPAPTTLFSPASRFPVGQKVFDTLGPGQYYNPAGAGASACRPAGSGVVAWTGIDTFADSEWSKSVPPPRLRPWQGFGNGCSVQEHIDYGACLDGRCCSRHSIEKKNALLVVQFLD-------GQRHRRSPQSPEPVHEDASPSSRSPATHNEDGTPLSFSSAGVGGGGGELAVGS-GAARAAVRKRTPLHFASERGELSLVDRLCFQGDDRNAVDERGFXXXXXXXXXXXXXXXXXXXQGDDENEVQPAGGETAPRGAAPTRPRQVPADPNVQDDKGRTPLYLACHRGHERAVRALLKAGACPDLVDIRGKPAQEVAGAQNIYQLLQFKADVSLVKANIAALEGRQRNEERQRKKVAQAAALKELAELKEEELRLKAAVSALENKREAYAAAANA 535
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: D7FMA6_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA6_ECTSI) HSP 1 Score: 362 bits (929), Expect = 4.450e-116 Identity = 239/420 (56.90%), Postives = 282/420 (67.14%), Query Frame = 1
Query: 694 GSDPATQGVSRNTPGAIYNPNIGSSRATASAARFSPSDRFAARSSAFITPGPG-HYSP-GEEESSNRKAA-GAVAWTGADTFMDSEWCRPARPTYLHSWRGFGHGCNMDEHIGYGACLDGLCCTRHSIEKRNALRVVQFRGQTGKSRRDSRRRRSDRSEN--HHLGSPLSRSGKENQPVGGTSSSNAVPAGKPRGQLAGSSLSLTRSSHRERTPLHFASERGELSLVDRLCSQGDDRNAVDERGYXXXXXXXXXXXXXXXXXXXXREEDEIR------APPTRTTAVAPQGPADADAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRGKPAQEVAGQQKVYQLLQFKADVSLMKANIAALEERKQSADRLRQDAARASTQNELEELKREELRLRALIVAVEKKRRAYTAATDS 1920
G++ A G SR+TPGAIY+PNIG S A A FSP+ RF F TPGPG +Y+P G S+ R A G VAWTG DTF DSEW RP P L W+GFG+GC++ EHI YGACLDG CC+RHS+EK+NAL V QF R+RRS RS SP S S + G S + G G+ A S R++ R+RTPLHFASERGELSLVDRLC QGDDRNAVDERG+XXXXXXXXXXXXXXXXX +E+E++ AP Q PAD + QD++GRTPLYLAC RGHER VRALLKAGA PDLVDIRGKPAQEVAG QK+YQLLQFKADVSL+KANIAALE R+++ +R R+ A+A+ E EELRL+A + A+E KR AY AA +
Sbjct: 4 GAESAVPGASRDTPGAIYDPNIGGSSAPAPTTLFSPASRFPVGQKVFDTPGPGQYYNPAGAGASACRPAGPGVVAWTGIDTFADSEWSRPVPPPRLRPWQGFGNGCSVQEHIDYGACLDGRCCSRHSVEKKNALLVAQFLD-------GQRQRRSPRSPEPAREDASPSSNSPATHNEDGTPLSFASADVGGGGGEFAVGS-GAARAAVRKRTPLHFASERGELSLVDRLCFQGDDRNAVDERGFXXXXXXXXXXXXXXXXXLLQGDENEVQPAGGENAPRGAAPKRPRQLPADPNVQDDKGRTPLYLACHRGHERAVRALLKAGACPDLVDIRGKPAQEVAGAQKIYQLLQFKADVSLVKANIAALEGRQRNEERQRKKVAQAAALKEXXXXXAEELRLKAAVSALENKREAYAAAAKA 415
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: V6TWT8_GIAIN (Ankyrin repeat protein n=3 Tax=Giardia intestinalis TaxID=5741 RepID=V6TWT8_GIAIN) HSP 1 Score: 62.4 bits (150), Expect = 4.930e-7 Identity = 37/128 (28.91%), Postives = 58/128 (45.31%), Query Frame = 1
Query: 1318 PLHFASERGELSLVDRLCSQGDDRNAVDERGYXXXXXXXXXXXXXXXXXXXXREEDEIRAPPTRTTAVAPQGPADADAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRGKPAQEVAGQQKV 1701
P+H A G++ ++ L +G D N VD + T +A + D D D+QGRTPL++AC++GH I AL+ +GA D++DI GKP + A ++
Sbjct: 92 PVHIAVANGDVDTLEYLFKKGFDLNVVDPAIHGGTVVHRCAISNDLSML---------------TYLLAHKAYLDLDITDDQGRTPLHIACIKGHPDIAHALIDSGASTDIIDIDGKPPRYYADTNRL 204
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: A0A6H5HZY6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HZY6_9HYME) HSP 1 Score: 61.2 bits (147), Expect = 5.380e-6 Identity = 43/118 (36.44%), Postives = 56/118 (47.46%), Query Frame = 1
Query: 1315 TPLHFASERGELSLV-DRLCSQGDDRNAVDERGYXXXXXXXXXXXXXXXXXXXXREEDEIRAPPTRTTAVAPQGPADADAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRG 1665
TPLH A + EL V + L +G N VD G+ +DE R T+ P + DA+D GRTPL+LA RG+ R+V+ LLK GADP+L D G
Sbjct: 598 TPLHHALVKEELRPVAELLLRKGAATNLVDWEGFTPLHTVCKYA------------DDEDRVRMLIETSNEENKPVEVDARDKLGRTPLHLALARGNGRVVKYLLKLGADPNLADENG 703
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: A0A508BCE5_9GAMM (Uncharacterized protein n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A508BCE5_9GAMM) HSP 1 Score: 57.8 bits (138), Expect = 2.020e-5 Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 1546 DAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRGKPAQEVAGQQ 1695
D QD QGRTP++LA + H R+VRALL AGADP+L D G +V +Q
Sbjct: 178 DIQDKQGRTPMFLAAVTAHHRVVRALLAAGADPELADRDGYRPVDVVRRQ 227
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: A0A523F1J1_9PROT (Ankyrin repeat domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523F1J1_9PROT) HSP 1 Score: 58.2 bits (139), Expect = 2.040e-5 Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1537 ADADAQDNQGRTPLYLACLRGHERIVRALLKAGADPDLVDIRGKPAQEVAGQQKV 1701
A D DN+GRT L +A RGH +IV ALLKAGADP+L+D G A E+A ++
Sbjct: 264 ATLDLADNRGRTALMIAAGRGHRQIVEALLKAGADPELMDRDGYGAWELAASDEI 318
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Match: A0A836CHI4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI4_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.780e-5 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 979 WRGFGHGCNMDEHIGYGACLDGLCCTRHSIEKRNALRVVQFRGQTG 1116
W +G+GC++DEH+ YGACLDG C RH+ E+ N R + R G
Sbjct: 529 WGTYGYGCSLDEHVLYGACLDGKCLQRHAAERLNQARCRRHRAHAG 574 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1211.4345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1211.4345.1 >prot_M-pyrifera_M_contig1211.4345.1 ID=prot_M-pyrifera_M_contig1211.4345.1|Name=mRNA_M-pyrifera_M_contig1211.4345.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=644bp SPEDDIVSSAKAHAANIRRTLWLKEYKRANCRPFVATSGTTAKGSNSELSback to top mRNA from alignment at M-pyrifera_M_contig1211:12478..23913+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1211.4345.1 ID=mRNA_M-pyrifera_M_contig1211.4345.1|Name=mRNA_M-pyrifera_M_contig1211.4345.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=11436bp|location=Sequence derived from alignment at M-pyrifera_M_contig1211:12478..23913+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1211:12478..23913+ >mRNA_M-pyrifera_M_contig1211.4345.1 ID=mRNA_M-pyrifera_M_contig1211.4345.1|Name=mRNA_M-pyrifera_M_contig1211.4345.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3864bp|location=Sequence derived from alignment at M-pyrifera_M_contig1211:12478..23913+ (Macrocystis pyrifera P11B4 male)back to top |