mRNA_M-pyrifera_M_contig120852.4294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120852.4294.1
Unique NamemRNA_M-pyrifera_M_contig120852.4294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A517W9B9_9PLAN (Non-specific serine/threonine protein kinase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W9B9_9PLAN)

HSP 1 Score: 235 bits (599), Expect = 5.840e-70
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            ETVISRLKNAIQHATHLV+DSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE
Sbjct:  752 ETVISRLKNAIQHATHLVSDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 873          
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A518A3B2_9PLAN (Non-specific serine/threonine protein kinase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3B2_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 1.630e-51
Identity = 93/122 (76.23%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            +T+ISRLK+AIQHA+ LV+DSPTIPEYKISLIHSHNKLAHAMDILT  + P+I+ RQ HDTAELSLRTA+RLQKEL E+FP+S E+ QWLAKFE++LAMIV KKGN +EAITL+  ALQILE
Sbjct:  752 DTLISRLKSAIQHASRLVSDSPTIPEYKISLIHSHNKLAHAMDILTMGYVPDIENRQYHDTAELSLRTAMRLQKELTERFPDSEEYKQWLAKFEIDLAMIVSKKGNVKEAITLFNSALQILE 873          
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A517RCM7_9PLAN (Non-specific serine/threonine protein kinase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RCM7_9PLAN)

HSP 1 Score: 147 bits (370), Expect = 1.640e-38
Identity = 80/123 (65.04%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEID-TRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            ET+  RL+NAIQHA+ LV+D PTIPEYKISLIH+HNKLAHAMDILT   SP+ D  R  HDT E SLRTA+RLQ+ELA QFPE  EH  WLA+FE+ LA I+ +KG+  EAI L ++A++ILE
Sbjct:  755 ETIAKRLQNAIQHASRLVSDYPTIPEYKISLIHAHNKLAHAMDILTDG-SPDSDKVRLRHDTGERSLRTAIRLQRELANQFPEVPEHQTWLARFEIMLANILERKGSEAEAIPLMENAIKILE 876          
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A2E2BWI6_9PLAN (Non-specific serine/threonine protein kinase n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWI6_9PLAN)

HSP 1 Score: 145 bits (366), Expect = 5.670e-38
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            E VI RL+ AIQHA+ LV+D PTIPEYKISLIH+HNKLAH +D +TR      + R  HDTAELSLRTALRLQKEL  QFPE+ EH  W+AKFE  LA I+ KKG+  EAI+L K A+ IL+
Sbjct:  755 ENVIGRLEQAIQHASRLVSDYPTIPEYKISLIHAHNKLAHGLDKMTRLSGASNEIRTRHDTAELSLRTALRLQKELTLQFPEAPEHRLWMAKFEAGLAEILYKKGSETEAISLLKSAINILQ 876          
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A517X8I7_9PLAN (Non-specific serine/threonine protein kinase n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X8I7_9PLAN)

HSP 1 Score: 137 bits (345), Expect = 3.850e-35
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            E+VI RL+ AIQHA+ LV+D PTIPEYKISLIH+HNKLAH +D +T       + R  HDTAELSLRTALRLQKEL  QFPE+ EH  W AKFE  LA I+ KKG+  EAI+L + A++ L+
Sbjct:  756 ESVIVRLEKAIQHASRLVSDYPTIPEYKISLIHAHNKLAHGLDKMTTQQGGSNEIRTRHDTAELSLRTALRLQKELIIQFPEAPEHRIWKAKFENGLADILYKKGSETEAISLLESAIKTLQ 877          
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Match: A0A517VXT8_9PLAN (Non-specific serine/threonine protein kinase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VXT8_9PLAN)

HSP 1 Score: 103 bits (258), Expect = 2.060e-23
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHSPEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMIVGKKGNTEEAITLYKHALQILE 366
            E ++++LK AIQHA+ L               H+HNK+AH +D L++ ++   + R  HD+AELSLR A+RLQKEL  QFP+ AE+  WLAKF++ L  I+ +K + EEAI+L + A++ILE
Sbjct:  755 EALLTQLKKAIQHASRLXXXXXXXXXXXXXXXHAHNKMAHVLDALSKQNATLEEVRLRHDSAELSLRAAIRLQKELIVQFPQYAEYKNWLAKFQIALGKILYRKEHEEEAISLLEGAVEILE 876          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120852.4294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517W9B9_9PLAN5.840e-7099.18Non-specific serine/threonine protein kinase n=6 T... [more]
A0A518A3B2_9PLAN1.630e-5176.23Non-specific serine/threonine protein kinase n=3 T... [more]
A0A517RCM7_9PLAN1.640e-3865.04Non-specific serine/threonine protein kinase n=2 T... [more]
A0A2E2BWI6_9PLAN5.670e-3863.93Non-specific serine/threonine protein kinase n=3 T... [more]
A0A517X8I7_9PLAN3.850e-3561.48Non-specific serine/threonine protein kinase n=6 T... [more]
A0A517VXT8_9PLAN2.060e-2345.08Non-specific serine/threonine protein kinase n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120852contigM-pyrifera_M_contig120852:107..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score140.6
Seed ortholog evalue4.9e-31
Seed eggNOG ortholog344747.PM8797T_15651
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine threonine protein kinase
EggNOG OGs2IWUD@203682,COG0515@1,COG0515@2
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.0264132-CDS-M-pyrifera_M_contig120852:106..4721622815728.0264132-CDS-M-pyrifera_M_contig120852:106..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120852 107..472 -
1692277541.3769467-CDS-M-pyrifera_M_contig120852:106..4721692277541.3769467-CDS-M-pyrifera_M_contig120852:106..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120852 107..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120852.4294.1prot_M-pyrifera_M_contig120852.4294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120852 107..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120852.4294.1

>prot_M-pyrifera_M_contig120852.4294.1 ID=prot_M-pyrifera_M_contig120852.4294.1|Name=mRNA_M-pyrifera_M_contig120852.4294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
ETVISRLKNAIQHATHLVTDSPTIPEYKISLIHSHNKLAHAMDILTRNHS
PEIDTRQSHDTAELSLRTALRLQKELAEQFPESAEHNQWLAKFELELAMI
VGKKGNTEEAITLYKHALQILE
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mRNA from alignment at M-pyrifera_M_contig120852:107..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120852.4294.1 ID=mRNA_M-pyrifera_M_contig120852.4294.1|Name=mRNA_M-pyrifera_M_contig120852.4294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig120852:107..472- (Macrocystis pyrifera P11B4 male)
GAGACAGTGATTTCACGTTTAAAGAACGCCATACAACATGCGACTCACCT GGTCACTGATTCTCCGACCATTCCCGAGTACAAAATCTCGCTGATTCATT CGCACAATAAACTGGCACATGCGATGGATATTCTCACGAGAAATCATTCA CCGGAAATTGATACTCGTCAGTCTCATGATACGGCAGAGCTGTCTCTGCG AACGGCACTGCGATTACAAAAAGAACTGGCGGAACAGTTTCCTGAATCAG CAGAGCACAATCAGTGGCTGGCTAAATTTGAACTCGAACTGGCGATGATC GTCGGTAAGAAAGGAAACACCGAGGAAGCAATCACTCTCTATAAGCATGC GCTCCAGATTCTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120852:107..472-

>mRNA_M-pyrifera_M_contig120852.4294.1 ID=mRNA_M-pyrifera_M_contig120852.4294.1|Name=mRNA_M-pyrifera_M_contig120852.4294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig120852:107..472- (Macrocystis pyrifera P11B4 male)
GAGACAGTGATTTCACGTTTAAAGAACGCCATACAACATGCGACTCACCT
GGTCACTGATTCTCCGACCATTCCCGAGTACAAAATCTCGCTGATTCATT
CGCACAATAAACTGGCACATGCGATGGATATTCTCACGAGAAATCATTCA
CCGGAAATTGATACTCGTCAGTCTCATGATACGGCAGAGCTGTCTCTGCG
AACGGCACTGCGATTACAAAAAGAACTGGCGGAACAGTTTCCTGAATCAG
CAGAGCACAATCAGTGGCTGGCTAAATTTGAACTCGAACTGGCGATGATC
GTCGGTAAGAAAGGAAACACCGAGGAAGCAATCACTCTCTATAAGCATGC
GCTCCAGATTCTGGAAGAGACAGTGATTTCACGTTTAAAGAACGCCATAC
AACATGCGACTCACCTGGTCACTGATTCTCCGACCATTCCCGAGTACAAA
ATCTCGCTGATTCATTCGCACAATAAACTGGCACATGCGATGGATATTCT
CACGAGAAATCATTCACCGGAAATTGATACTCGTCAGTCTCATGATACGG
CAGAGCTGTCTCTGCGAACGGCACTGCGATTACAAAAAGAACTGGCGGAA
CAGTTTCCTGAATCAGCAGAGCACAATCAGTGGCTGGCTAAATTTGAACT
CGAACTGGCGATGATCGTCGGTAAGAAAGGAAACACCGAGGAAGCAATCA
CTCTCTATAAGCATGCGCTCCAGATTCTGGAA
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