mRNA_M-pyrifera_M_contig120837.4289.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120837.4289.1
Unique NamemRNA_M-pyrifera_M_contig120837.4289.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120837.4289.1 vs. uniprot
Match: A0A7C8ALP4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ALP4_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-11
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 MTSNSYDSTRQRNVLLGCLFWVAFAFVAVLVRGVSWDETYEHALAITGIAPYPDGHPFY 177
            M  N    +R R +  G   WV FA +A+ +RGV WDET+EHA  +TG  PYP+GHP +
Sbjct:    1 MNENEKHPSR-RAIAFGIALWVVFAIIAIGIRGVRWDETFEHAQVLTGQTPYPEGHPLF 58
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BLAST of mRNA_M-pyrifera_M_contig120837.4289.1 vs. uniprot
Match: A0A2A5E664_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5E664_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:    4 TSNSYDSTRQRNVLLGCLFWVAFAFVAVLVRGVSWDETYEHALAITGIAPYPDGHPFY 177
            T N   +   R +    LFW+ F  VAVLVRG+ WDET+E A  +TG   YP  HP Y
Sbjct:    8 TENRAYTLTDRRIQYSLLFWLLFCLVAVLVRGIRWDETHEWAQIMTGDVVYPHDHPHY 65
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120837.4289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C8ALP4_9BACT1.590e-1147.46Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A2A5E664_9BACT4.400e-946.55Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120837contigM-pyrifera_M_contig120837:5..181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.8426712-CDS-M-pyrifera_M_contig120837:4..1811622815727.8426712-CDS-M-pyrifera_M_contig120837:4..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120837 5..181 -
1692277541.2954044-CDS-M-pyrifera_M_contig120837:4..1811692277541.2954044-CDS-M-pyrifera_M_contig120837:4..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120837 5..181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120837.4289.1prot_M-pyrifera_M_contig120837.4289.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120837 5..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120837.4289.1

>prot_M-pyrifera_M_contig120837.4289.1 ID=prot_M-pyrifera_M_contig120837.4289.1|Name=mRNA_M-pyrifera_M_contig120837.4289.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MTSNSYDSTRQRNVLLGCLFWVAFAFVAVLVRGVSWDETYEHALAITGIA
PYPDGHPFY
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mRNA from alignment at M-pyrifera_M_contig120837:5..181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120837.4289.1 ID=mRNA_M-pyrifera_M_contig120837.4289.1|Name=mRNA_M-pyrifera_M_contig120837.4289.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig120837:5..181- (Macrocystis pyrifera P11B4 male)
ATGACATCAAATTCATATGATTCGACAAGGCAGCGAAATGTACTCCTCGG
GTGTCTGTTCTGGGTCGCATTTGCCTTCGTAGCCGTTCTGGTGCGCGGCG
TGTCGTGGGATGAGACGTATGAGCATGCGCTCGCGATTACCGGGATCGCA
CCATATCCGGATGGTCATCCGTTTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120837:5..181-

>mRNA_M-pyrifera_M_contig120837.4289.1 ID=mRNA_M-pyrifera_M_contig120837.4289.1|Name=mRNA_M-pyrifera_M_contig120837.4289.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig120837:5..181- (Macrocystis pyrifera P11B4 male)
ATGACATCAAATTCATATGATTCGACAAGGCAGCGAAATGTACTCCTCGG
GTGTCTGTTCTGGGTCGCATTTGCCTTCGTAGCCGTTCTGGTGCGCGGCG
TGTCGTGGGATGAGACGTATGAGCATGCGCTCGCGATTACCGGGATCGCA
CCATATCCGGATGGTCATCCGTTTTACATGACATCAAATTCATATGATTC
GACAAGGCAGCGAAATGTACTCCTCGGGTGTCTGTTCTGGGTCGCATTTG
CCTTCGTAGCCGTTCTGGTGCGCGGCGTGTCGTGGGATGAGACGTATGAG
CATGCGCTCGCGATTACCGGGATCGCACCATATCCGGATGGTCATCCGTT
TTAC
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