mRNA_M-pyrifera_M_contig120650.4252.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120650.4252.1
Unique NamemRNA_M-pyrifera_M_contig120650.4252.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120650.4252.1 vs. uniprot
Match: A0A3D5DGF8_9GAMM (Type III pantothenate kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGF8_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 1.450e-13
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 TGAAISNGCHDAFAGGIERMYARIQREVGADIPCFVSGGEAQLIMDACALPMRAVPDLVLRGLALAE 201
            T AAIS GC  A AGGIERM  +++   GA+    ++GGEAQ +MD C    R +PDLVLRGLA+A 
Sbjct:  173 TPAAISMGCIGALAGGIERMQDKVRELFGAEHEWLITGGEAQQVMDLCTTEFRHIPDLVLRGLAVAS 239
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BLAST of mRNA_M-pyrifera_M_contig120650.4252.1 vs. uniprot
Match: A0A523PBF0_9PROT (Type III pantothenate kinase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PBF0_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 1.130e-10
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    1 TGAAISNGCHDAFAGGIERMYARIQREVGADIPCFVSGGEAQLIMDACALPMRAVPDLVLRGLALAEG 204
            T  AIS GC DA AGGI++M  +++  + A+    ++GGEA +IMD   +  R VPDLVLRGL L   
Sbjct:  172 TATAISMGCIDAVAGGIDKMRQKVRARLAAEPLWIITGGEAPIIMDISPVEFRHVPDLVLRGLVLVAN 239
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BLAST of mRNA_M-pyrifera_M_contig120650.4252.1 vs. uniprot
Match: A0A011NUQ6_9PROT (Type III pantothenate kinase n=2 Tax=unclassified Candidatus Accumulibacter TaxID=2619054 RepID=A0A011NUQ6_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 1.070e-5
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 TGAAISNGCHDAFAGGIERMYARIQREVGADIPCFVSGGEAQLIMDACALPMRAVPDLVLRGL 189
            T  AI +GC  A  G +ERM+A I  E GA   C ++GG A+ ++    +P R V +L+LRGL
Sbjct:  173 TSDAIVSGCLQAQLGAVERMFAPIASEAGAQ--CLLTGGAAERLVAHLRIPFRLVENLILRGL 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120650.4252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3D5DGF8_9GAMM1.450e-1353.73Type III pantothenate kinase n=1 Tax=Gammaproteoba... [more]
A0A523PBF0_9PROT1.130e-1047.06Type III pantothenate kinase n=1 Tax=Proteobacteri... [more]
A0A011NUQ6_9PROT1.070e-542.86Type III pantothenate kinase n=2 Tax=unclassified ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120650contigM-pyrifera_M_contig120650:2..217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.9740903-CDS-M-pyrifera_M_contig120650:1..2171622815725.9740903-CDS-M-pyrifera_M_contig120650:1..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120650 2..217 +
1692277540.2701387-CDS-M-pyrifera_M_contig120650:1..2171692277540.2701387-CDS-M-pyrifera_M_contig120650:1..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120650 2..217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120650.4252.1prot_M-pyrifera_M_contig120650.4252.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120650 2..217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120650.4252.1

>prot_M-pyrifera_M_contig120650.4252.1 ID=prot_M-pyrifera_M_contig120650.4252.1|Name=mRNA_M-pyrifera_M_contig120650.4252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
TGAAISNGCHDAFAGGIERMYARIQREVGADIPCFVSGGEAQLIMDACAL
PMRAVPDLVLRGLALAEGVTL*
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mRNA from alignment at M-pyrifera_M_contig120650:2..217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120650.4252.1 ID=mRNA_M-pyrifera_M_contig120650.4252.1|Name=mRNA_M-pyrifera_M_contig120650.4252.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig120650:2..217+ (Macrocystis pyrifera P11B4 male)
ACGGGCGCCGCGATCTCGAACGGGTGCCACGACGCGTTCGCCGGCGGCAT
CGAACGCATGTACGCAAGAATCCAGCGTGAAGTCGGCGCGGATATTCCCT
GCTTCGTCTCCGGCGGCGAAGCGCAGTTGATCATGGATGCGTGTGCGCTG
CCGATGCGCGCAGTGCCCGATCTCGTACTGCGTGGTCTCGCGCTCGCCGA
AGGAGTGACGCTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120650:2..217+

>mRNA_M-pyrifera_M_contig120650.4252.1 ID=mRNA_M-pyrifera_M_contig120650.4252.1|Name=mRNA_M-pyrifera_M_contig120650.4252.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig120650:2..217+ (Macrocystis pyrifera P11B4 male)
ACGGGCGCCGCGATCTCGAACGGGTGCCACGACGCGTTCGCCGGCGGCAT
CGAACGCATGTACGCAAGAATCCAGCGTGAAGTCGGCGCGGATATTCCCT
GCTTCGTCTCCGGCGGCGAAGCGCAGTTGATCATGGATGCGTGTGCGCTG
CCGATGCGCGCAGTGCCCGATCTCGTACTGCGTGGTCTCGCGCTCGCCGA
AGGAGTGACGCTGTGAACGGGCGCCGCGATCTCGAACGGGTGCCACGACG
CGTTCGCCGGCGGCATCGAACGCATGTACGCAAGAATCCAGCGTGAAGTC
GGCGCGGATATTCCCTGCTTCGTCTCCGGCGGCGAAGCGCAGTTGATCAT
GGATGCGTGTGCGCTGCCGATGCGCGCAGTGCCCGATCTCGTACTGCGTG
GTCTCGCGCTCGCCGAAGGAGTGACGCTGTGA
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