mRNA_M-pyrifera_M_contig120457.4221.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120457.4221.1
Unique NamemRNA_M-pyrifera_M_contig120457.4221.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Match: A0A3D3RFF1_9PLAN (Large ATP-binding protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RFF1_9PLAN)

HSP 1 Score: 102 bits (254), Expect = 4.040e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 153
            KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW
Sbjct:  600 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 650
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BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Match: A0A494J8N4_9FLAO (Uncharacterized protein n=1 Tax=Elizabethkingia anophelis TaxID=1117645 RepID=A0A494J8N4_9FLAO)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 153
            +DL  LI GLE+L  EL H+Q+IVAS+++D +L H+  ++ K +  DN LW
Sbjct:  625 EDLNNLIGGLENLCKELPHLQIIVASVANDTLLEHIPMTQRKYAEGDNFLW 675
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BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Match: A0A0J0Y0Y8_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. BMA TaxID=1663685 RepID=A0A0J0Y0Y8_9SPHI)

HSP 1 Score: 53.1 bits (126), Expect = 9.110e-7
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 153
            +DL  LI+GLEDL + L  +Q+I+AS++++ +L+HVDE   K +H    LW
Sbjct:  621 EDLNNLIAGLEDLRSSLPSLQIIIASVANETLLDHVDEHHRKYAHDHEFLW 671
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BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Match: A0A6G8CVQ6_9BURK (Large ATP-binding protein n=13 Tax=Proteobacteria TaxID=1224 RepID=A0A6G8CVQ6_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 5.970e-6
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 153
            +DL +L+SGL+D+ +EL H+Q+ VA ++S A+++HV ES  +++     LW
Sbjct:  601 EDLRELLSGLKDIRDELPHLQIFVAGVTSKAMIDHVPESHRREATNGGYLW 651
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BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Match: A0A8G4D596_PSEAI (Large ATP-binding protein n=4 Tax=Pseudomonas aeruginosa TaxID=287 RepID=A0A8G4D596_PSEAI)

HSP 1 Score: 48.1 bits (113), Expect = 5.360e-5
Identity = 21/51 (41.18%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPLW 153
            +D++ L++GL+++S +L H+QV VA I+S AI +H+ ES  +Q+     LW
Sbjct:  604 EDVDHLVTGLQEVSGKLPHMQVFVAGIASKAITDHIPESHRQQASGTAFLW 654
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120457.4221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3D3RFF1_9PLAN4.040e-24100.00Large ATP-binding protein n=2 Tax=Gimesia TaxID=16... [more]
A0A494J8N4_9FLAO1.390e-747.06Uncharacterized protein n=1 Tax=Elizabethkingia an... [more]
A0A0J0Y0Y8_9SPHI9.110e-745.10Uncharacterized protein n=1 Tax=Pedobacter sp. BMA... [more]
A0A6G8CVQ6_9BURK5.970e-641.18Large ATP-binding protein n=13 Tax=Proteobacteria ... [more]
A0A8G4D596_PSEAI5.360e-541.18Large ATP-binding protein n=4 Tax=Pseudomonas aeru... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120457contigM-pyrifera_M_contig120457:382..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.3428586-CDS-M-pyrifera_M_contig120457:381..5371622815724.3428586-CDS-M-pyrifera_M_contig120457:381..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120457 382..537 -
1692277539.3782034-CDS-M-pyrifera_M_contig120457:381..5371692277539.3782034-CDS-M-pyrifera_M_contig120457:381..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120457 382..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120457.4221.1prot_M-pyrifera_M_contig120457.4221.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120457 382..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120457.4221.1

>prot_M-pyrifera_M_contig120457.4221.1 ID=prot_M-pyrifera_M_contig120457.4221.1|Name=mRNA_M-pyrifera_M_contig120457.4221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
KDLEQLISGLEDLSNELEHIQVIVASISSDAILNHVDESRLKQSHADNPL
W*
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mRNA from alignment at M-pyrifera_M_contig120457:382..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120457.4221.1 ID=mRNA_M-pyrifera_M_contig120457.4221.1|Name=mRNA_M-pyrifera_M_contig120457.4221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig120457:382..537- (Macrocystis pyrifera P11B4 male)
AAGGACTTAGAACAGTTGATTTCAGGTTTAGAGGACCTATCGAACGAGCT
TGAGCATATACAAGTGATTGTTGCGTCAATTTCATCTGATGCGATATTGA
ATCACGTTGATGAATCAAGGCTAAAGCAATCTCATGCAGATAATCCGCTC
TGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120457:382..537-

>mRNA_M-pyrifera_M_contig120457.4221.1 ID=mRNA_M-pyrifera_M_contig120457.4221.1|Name=mRNA_M-pyrifera_M_contig120457.4221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig120457:382..537- (Macrocystis pyrifera P11B4 male)
AAGGACTTAGAACAGTTGATTTCAGGTTTAGAGGACCTATCGAACGAGCT
TGAGCATATACAAGTGATTGTTGCGTCAATTTCATCTGATGCGATATTGA
ATCACGTTGATGAATCAAGGCTAAAGCAATCTCATGCAGATAATCCGCTC
TGGTAGAAGGACTTAGAACAGTTGATTTCAGGTTTAGAGGACCTATCGAA
CGAGCTTGAGCATATACAAGTGATTGTTGCGTCAATTTCATCTGATGCGA
TATTGAATCACGTTGATGAATCAAGGCTAAAGCAATCTCATGCAGATAAT
CCGCTCTGGTAG
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