mRNA_M-pyrifera_M_contig120400.4207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120400.4207.1
Unique NamemRNA_M-pyrifera_M_contig120400.4207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A7S4MDD6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MDD6_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    7 KVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLERIE 216
            ++W +    A  + +PI  F+++QIWV S HD HNA++G +  ++M   F ELFKR+FG LRPD+LERI+
Sbjct:  101 ELWTSGREYALWIGIPITGFILAQIWVWSLHDFHNAILGYIQSWIMTAFFVELFKRIFGFLRPDYLERID 170          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A4Q4WA32_9PEZI (acidPPc domain-containing protein n=8 Tax=Monosporascus TaxID=155415 RepID=A0A4Q4WA32_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.280e-7
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLE 207
            ++++ P  L+     VVPIVVFL+ QI VRS  D++NAVVGLL   + A +F    K L G LRP FLE
Sbjct:   93 RKEIIPIWLAAFLAAVVPIVVFLLMQIRVRSFWDVNNAVVGLLYSLITAAVFQVFLKWLIGGLRPHFLE 161          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A2P6NBA8_9EUKA (acidPPc domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBA8_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 4.840e-7
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   16 PNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDF 201
            P  L + F LV+PI+VF+V Q   +S HDLH+AV+GLLA F +A       K L G+ RPD+
Sbjct:   73 PAWLLIIFALVLPILVFVVFQFHHKSKHDLHHAVLGLLASFCLALFVTSALKSLAGRYRPDY 134          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A8H8SB91_9HELO (PA-phosphatase related-family protein n=1 Tax=Lachnellula occidentalis TaxID=215460 RepID=A0A8H8SB91_9HELO)

HSP 1 Score: 52.4 bits (124), Expect = 3.830e-6
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFL 204
            + ++ P  L+    ++VPI VFL+ QI VRS  DL+NA++GL+   + A +F    K L G LRP FL
Sbjct:   99 RNEIVPIWLATFLAIMVPIAVFLICQIRVRSFWDLNNAIIGLVYALITAAVFQVFLKWLIGGLRPHFL 166          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A3B8LK79_9DELT (acidPPc domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A3B8LK79_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 1.740e-5
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   49 VPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLERIE 216
            +P+ +F +SQIWVRS HD H+A +GL     +      L K   G+LRPDF+ R +
Sbjct:  103 IPLALFGLSQIWVRSGHDFHHAALGLFEGISLTFFTTTLLKVTIGRLRPDFIARCQ 158          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A8H4XXH4_9HYPO (acidPPc domain-containing protein n=1 Tax=Fusarium sp. NRRL 66182 TaxID=2692428 RepID=A0A8H4XXH4_9HYPO)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   49 VPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLE 207
            VPI +FLV QI +RS  D++NAV+GLL   + A +F    K L G LRP FLE
Sbjct:  107 VPIFIFLVMQIRIRSFWDVNNAVIGLLYSLITAAVFQVFVKWLIGGLRPHFLE 159          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A7D8UWJ7_9HELO (Lipid phosphate phosphatase 1 n=1 Tax=Lachnellula cervina TaxID=1316786 RepID=A0A7D8UWJ7_9HELO)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFL 204
            + ++ P   +    LVVP+ +FL+ QI VRS  DL+NA++GL    L   +F  + K L G LRP FL
Sbjct:   92 RNEIVPIWAATVLALVVPVSIFLICQIRVRSFWDLNNAIIGLSYSLLTTAIFQVILKWLIGGLRPHFL 159          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: UPI001C80A57E (uncharacterized protein n=1 Tax=Diaporthe citri TaxID=83186 RepID=UPI001C80A57E)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFL 204
            ++++ P   +     +VPI VFLV QI +RS  D++NAV+GLL   + A +F    K L G LRP FL
Sbjct:   95 RKEIVPIWAAALLAALVPIFVFLVMQIRIRSFWDVNNAVIGLLYALITAAVFQVFVKWLIGGLRPHFL 162          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A1J9R856_9PEZI (Acid phosphatase vanadium-dependent haloperoxidase n=2 Tax=Diplodia TaxID=66735 RepID=A0A1J9R856_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 2.530e-5
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLE 207
            + +V P   +    ++VPI VFL+ QI +RS  DL+NA +GLL   + A +F    K L G LRP FL+
Sbjct:  108 RHEVVPIWAAALLAVLVPIAVFLIMQIRIRSFWDLNNATIGLLYSVITAAVFQVFLKWLIGGLRPHFLD 176          
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Match: A0A8K0M192_9HYPO (Phosphatidic acid phosphatase type 2/haloperoxidase n=2 Tax=Ilyonectria TaxID=1079112 RepID=A0A8K0M192_9HYPO)

HSP 1 Score: 49.7 bits (117), Expect = 3.420e-5
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   49 VPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAPLFAELFKRLFGQLRPDFLE 207
            VPI++FL+ QI +RS  DL+NAV+GLL   + A +F    K L G LRP FL+
Sbjct:  107 VPILIFLLMQIRIRSFWDLNNAVIGLLYSLISAAVFQVFVKWLIGGLRPHFLD 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120400.4207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S4MDD6_9EUKA1.130e-1347.14Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A4Q4WA32_9PEZI2.280e-749.28acidPPc domain-containing protein n=8 Tax=Monospor... [more]
A0A2P6NBA8_9EUKA4.840e-748.39acidPPc domain-containing protein n=1 Tax=Planopro... [more]
A0A8H8SB91_9HELO3.830e-642.65PA-phosphatase related-family protein n=1 Tax=Lach... [more]
A0A3B8LK79_9DELT1.740e-542.86acidPPc domain-containing protein n=2 Tax=Deltapro... [more]
A0A8H4XXH4_9HYPO2.500e-552.83acidPPc domain-containing protein n=1 Tax=Fusarium... [more]
A0A7D8UWJ7_9HELO2.500e-541.18Lipid phosphate phosphatase 1 n=1 Tax=Lachnellula ... [more]
UPI001C80A57E2.500e-542.65uncharacterized protein n=1 Tax=Diaporthe citri Ta... [more]
A0A1J9R856_9PEZI2.530e-542.03Acid phosphatase vanadium-dependent haloperoxidase... [more]
A0A8K0M192_9HYPO3.420e-550.94Phosphatidic acid phosphatase type 2/haloperoxidas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120400contigM-pyrifera_M_contig120400:5..220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.7122777-CDS-M-pyrifera_M_contig120400:4..2201622815723.7122777-CDS-M-pyrifera_M_contig120400:4..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120400 5..220 -
1692277539.115087-CDS-M-pyrifera_M_contig120400:4..2201692277539.115087-CDS-M-pyrifera_M_contig120400:4..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120400 5..220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120400.4207.1prot_M-pyrifera_M_contig120400.4207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120400 5..220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120400.4207.1

>prot_M-pyrifera_M_contig120400.4207.1 ID=prot_M-pyrifera_M_contig120400.4207.1|Name=mRNA_M-pyrifera_M_contig120400.4207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
QRKVWPNPLSLAFTLVVPIVVFLVSQIWVRSAHDLHNAVVGLLAVFLMAP
LFAELFKRLFGQLRPDFLERIE
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mRNA from alignment at M-pyrifera_M_contig120400:5..220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120400.4207.1 ID=mRNA_M-pyrifera_M_contig120400.4207.1|Name=mRNA_M-pyrifera_M_contig120400.4207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig120400:5..220- (Macrocystis pyrifera P11B4 male)
CAGCGAAAGGTGTGGCCCAATCCACTGTCGCTTGCGTTCACATTGGTGGT GCCCATTGTTGTGTTTCTTGTGAGCCAGATCTGGGTACGATCCGCACATG ACCTCCACAACGCCGTTGTGGGTCTACTGGCAGTGTTTTTGATGGCGCCT CTCTTTGCAGAGCTCTTTAAGAGACTCTTTGGCCAACTGAGGCCCGATTT CTTGGAGAGGATCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120400:5..220-

>mRNA_M-pyrifera_M_contig120400.4207.1 ID=mRNA_M-pyrifera_M_contig120400.4207.1|Name=mRNA_M-pyrifera_M_contig120400.4207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig120400:5..220- (Macrocystis pyrifera P11B4 male)
CAGCGAAAGGTGTGGCCCAATCCACTGTCGCTTGCGTTCACATTGGTGGT
GCCCATTGTTGTGTTTCTTGTGAGCCAGATCTGGGTACGATCCGCACATG
ACCTCCACAACGCCGTTGTGGGTCTACTGGCAGTGTTTTTGATGGCGCCT
CTCTTTGCAGAGCTCTTTAAGAGACTCTTTGGCCAACTGAGGCCCGATTT
CTTGGAGAGGATCGAGCAGCGAAAGGTGTGGCCCAATCCACTGTCGCTTG
CGTTCACATTGGTGGTGCCCATTGTTGTGTTTCTTGTGAGCCAGATCTGG
GTACGATCCGCACATGACCTCCACAACGCCGTTGTGGGTCTACTGGCAGT
GTTTTTGATGGCGCCTCTCTTTGCAGAGCTCTTTAAGAGACTCTTTGGCC
AACTGAGGCCCGATTTCTTGGAGAGGATCGAG
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