mRNA_M-pyrifera_M_contig120223.4173.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120223.4173.1
Unique NamemRNA_M-pyrifera_M_contig120223.4173.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120223.4173.1 vs. uniprot
Match: A0A3D5DCH7_9GAMM (PMT_2 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCH7_9GAMM)

HSP 1 Score: 178 bits (452), Expect = 8.670e-51
Identity = 97/172 (56.40%), Postives = 118/172 (68.60%), Query Frame = 1 
Query:    1 RYVDYALNIHDHHVFGLSGTRRDTPPPPGNANSPLYPALLALAAGFDPGLADSLRCALIERTNASACPRDYTTIVVIQCALVVGAMVCLWFTALRLFARQSIAWGACALALASTKPMFYANHLLTEILVLFLFAALMAALVAVGNRGSARAWATAGGILGALTLTRPEYLYL 516
            RY+DYALNIHDH VFGLSG  RD  P PGNANSPLYPAL+A A   D  L+ SL+C +I+ T A+ CP  Y+ IV +Q  LV+  + CLW T + LF R SIAW A  LALASTKP+  AN+LLTE+L+L LF+ LM A+V     G    +   G I+G L LTRPEY+YL
Sbjct:   44 RYIDYALNIHDHQVFGLSGVNRDKVPAPGNANSPLYPALIAFAIVLDSKLSSSLKCVIID-TAAANCPDHYSLIVGLQNVLVIVTLFCLWLTTIMLFRRSSIAWLAAGLALASTKPISLANYLLTEVLILCLFSMLMLAIVGAWKSGQHHWYLGIGVIMGCLILTRPEYIYL 214
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BLAST of mRNA_M-pyrifera_M_contig120223.4173.1 vs. uniprot
Match: A0A5R9JAV5_9PROT (Uncharacterized protein n=1 Tax=Lichenicoccus roseus TaxID=2683649 RepID=A0A5R9JAV5_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 8.720e-8
Identity = 57/179 (31.84%), Postives = 75/179 (41.90%), Query Frame = 1 
Query:    4 YVDYALNIHDHHVF----GLSGTRRDTPPPPGNANSPLYPALLALAAGFDPGLADSLRCALIERTNASACPRDYTTIVVIQCALVVGAMVCLWFTALRLFARQSIAW-GACALALASTKPMFYANHLLTEILVLFLFAALMAALVAVGNRGSARAWAT--AGGI-LGALTLTRPEYLYL 516
            Y+  A ++  H  F      +G    T  PPG   +PLYPA LA AA FDPGL   + C          CP         Q  +++     LW         +   W G     LA+   +   N L+TE L L L AA      +   + +A AW T  A GI LG   L+RP +LYL
Sbjct:   35 YLGIAYDLRQHGTFTDGFSYAGGGPATLRPPGMRFTPLYPAFLATAASFDPGLRRGIACVEATAGRDPGCPLAAPVARGAQFLMLLAFYWLLWIAIAGAMGSRRAGWIGLGTGLLAAPLLLLSVNTLMTETLTLVLSAAACTLAASAVRQPAATAWRTWLATGIALGLAILSRPAFLYL 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120223.4173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D5DCH7_9GAMM8.670e-5156.40PMT_2 domain-containing protein n=1 Tax=Gammaprote... [more]
A0A5R9JAV5_9PROT8.720e-831.84Uncharacterized protein n=1 Tax=Lichenicoccus rose... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120223contigM-pyrifera_M_contig120223:1..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.8927894-CDS-M-pyrifera_M_contig120223:0..5371622815721.8927894-CDS-M-pyrifera_M_contig120223:0..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120223 1..537 +
1692277538.141574-CDS-M-pyrifera_M_contig120223:0..5371692277538.141574-CDS-M-pyrifera_M_contig120223:0..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120223 1..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120223.4173.1prot_M-pyrifera_M_contig120223.4173.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120223 1..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120223.4173.1

>prot_M-pyrifera_M_contig120223.4173.1 ID=prot_M-pyrifera_M_contig120223.4173.1|Name=mRNA_M-pyrifera_M_contig120223.4173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
RYVDYALNIHDHHVFGLSGTRRDTPPPPGNANSPLYPALLALAAGFDPGL
ADSLRCALIERTNASACPRDYTTIVVIQCALVVGAMVCLWFTALRLFARQ
SIAWGACALALASTKPMFYANHLLTEILVLFLFAALMAALVAVGNRGSAR
AWATAGGILGALTLTRPEYLYLGGVLAVV
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mRNA from alignment at M-pyrifera_M_contig120223:1..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120223.4173.1 ID=mRNA_M-pyrifera_M_contig120223.4173.1|Name=mRNA_M-pyrifera_M_contig120223.4173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig120223:1..537+ (Macrocystis pyrifera P11B4 male)
CGTTACGTTGATTACGCCCTCAATATACACGACCACCACGTGTTCGGACT
GTCGGGCACGCGCCGGGATACGCCGCCACCACCGGGCAATGCAAACAGCC
CCCTGTACCCGGCGCTGCTCGCGCTGGCTGCCGGGTTCGATCCCGGCCTC
GCCGACAGTTTGCGCTGCGCGTTAATCGAGCGCACCAATGCGTCGGCGTG
TCCGCGTGATTACACCACTATCGTCGTCATCCAGTGCGCGCTCGTCGTCG
GCGCGATGGTGTGTCTGTGGTTTACCGCATTGCGCCTGTTCGCGCGCCAA
TCGATTGCCTGGGGCGCCTGTGCTCTCGCCCTGGCTTCGACGAAGCCGAT
GTTCTATGCGAACCACCTGCTGACCGAAATCCTCGTGTTGTTCCTGTTCG
CGGCGCTCATGGCCGCTCTCGTCGCCGTTGGTAACCGCGGCAGCGCGCGC
GCGTGGGCCACGGCCGGCGGCATCCTCGGGGCCTTGACGCTGACCCGCCC
GGAGTATCTCTACCTCGGCGGCGTACTTGCGGTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120223:1..537+

>mRNA_M-pyrifera_M_contig120223.4173.1 ID=mRNA_M-pyrifera_M_contig120223.4173.1|Name=mRNA_M-pyrifera_M_contig120223.4173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig120223:1..537+ (Macrocystis pyrifera P11B4 male)
CGTTACGTTGATTACGCCCTCAATATACACGACCACCACGTGTTCGGACT
GTCGGGCACGCGCCGGGATACGCCGCCACCACCGGGCAATGCAAACAGCC
CCCTGTACCCGGCGCTGCTCGCGCTGGCTGCCGGGTTCGATCCCGGCCTC
GCCGACAGTTTGCGCTGCGCGTTAATCGAGCGCACCAATGCGTCGGCGTG
TCCGCGTGATTACACCACTATCGTCGTCATCCAGTGCGCGCTCGTCGTCG
GCGCGATGGTGTGTCTGTGGTTTACCGCATTGCGCCTGTTCGCGCGCCAA
TCGATTGCCTGGGGCGCCTGTGCTCTCGCCCTGGCTTCGACGAAGCCGAT
GTTCTATGCGAACCACCTGCTGACCGAAATCCTCGTGTTGTTCCTGTTCG
CGGCGCTCATGGCCGCTCTCGTCGCCGTTGGTAACCGCGGCAGCGCGCGC
GCGTGGGCCACGGCCGGCGGCATCCTCGGGGCCTTGACGCTGACCCGCCC
GGAGTATCTCTACCTCGGCGGCGTACTTGCGGTCGTGCGTTACGTTGATT
ACGCCCTCAATATACACGACCACCACGTGTTCGGACTGTCGGGCACGCGC
CGGGATACGCCGCCACCACCGGGCAATGCAAACAGCCCCCTGTACCCGGC
GCTGCTCGCGCTGGCTGCCGGGTTCGATCCCGGCCTCGCCGACAGTTTGC
GCTGCGCGTTAATCGAGCGCACCAATGCGTCGGCGTGTCCGCGTGATTAC
ACCACTATCGTCGTCATCCAGTGCGCGCTCGTCGTCGGCGCGATGGTGTG
TCTGTGGTTTACCGCATTGCGCCTGTTCGCGCGCCAATCGATTGCCTGGG
GCGCCTGTGCTCTCGCCCTGGCTTCGACGAAGCCGATGTTCTATGCGAAC
CACCTGCTGACCGAAATCCTCGTGTTGTTCCTGTTCGCGGCGCTCATGGC
CGCTCTCGTCGCCGTTGGTAACCGCGGCAGCGCGCGCGCGTGGGCCACGG
CCGGCGGCATCCTCGGGGCCTTGACGCTGACCCGCCCGGAGTATCTCTAC
CTCGGCGGCGTACTTGCGGTCGTG
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