mRNA_M-pyrifera_M_contig120201.4168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120201.4168.1
Unique NamemRNA_M-pyrifera_M_contig120201.4168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: UPI00029AAFB2 (dihydrodipicolinate synthase family protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029AAFB2)

HSP 1 Score: 96.3 bits (238), Expect = 3.530e-21
Identity = 78/283 (27.56%), Postives = 96/283 (33.92%), Query Frame = 1
Query:    7 ELARVDGIRGVTCNGHTIEIMLLGPADRARVMRIVSVAVGAANAETGRPVKAISGVSEEGSQEGIEQALA-----------------------------------------------------------------------------------------------------------------------------------------------------------RIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGYVC 390
            ELARVDG++G+TCNGHT EIM L P +RA+V R+ + AV AAN ETGR VK ISGVS EGS E I+ ALA                                                                                                                                                           R++YNFGEPGC  H RMKV R ++ KFPSP FRRP+R L   ++ R++   E LG+ C
Sbjct:   36 ELARVDGVQGLTCNGHTGEIMSLRPEERAKVTRVCAEAVRAANKETGRQVKVISGVSAEGSLEAIDHALAAKEAGADAILLMPPHHWLRFGRSPKTAVGFIQDVAEGANIKIVIHQYPGWTKAGYSLGEMLEMVKLPQVVTIKMGTRDMARWLYEYEQLKKAAPHVSIITCHDEFLLPSLIEGCDGALIGFAGFAPELMIKIVHCALDGDLAGAKQAQKLVAPLARLIYNFGEPGCGAHQRMKVARWLMNKFPSPRFRRPVRPLPGEDVARMRNELEQLGFPC 318          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A7Y5C8J3_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C8J3_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 2.790e-18
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  211 LARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGYVCP 393
            LARI+YNFGEPGC  H RMKV R ++G+FPSPHFRRP+R L+  +I++I+   E++G+ CP
Sbjct:  255 LARIIYNFGEPGCGAHQRMKVARWLMGRFPSPHFRRPVRPLAPEQIDQIRKDLEAIGFECP 315          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A7C1HFI6_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1HFI6_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 8.330e-16
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  211 LARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGYV 387
            LAR++YNFGEPGC  H RMKV   ++GKF SP FRRPIR L E +IERI+ + + +GY+
Sbjct:  106 LARLIYNFGEPGCSAHQRMKVALWMMGKFSSPVFRRPIRPLHEDQIERIRRALQDIGYL 164          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A838QW41_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QW41_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 7.060e-15
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    7 ELARVDGIRGVTCNGHTIEIMLLGPADRARVMRIVSVAVGAANAETGRPVKAISGVSEEGSQEGIEQALA 216
            ELA VDG+ G+TCNGHT E+M L P +RARV R+   AV   N  TGR V+ ISGVS EGS E I+ ALA
Sbjct:   36 ELAEVDGVEGLTCNGHTGEVMSLRPEERARVTRLCVKAVRQVNERTGRRVRVISGVSAEGSLEAIDHALA 105          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A6B1CQH1_9BACT (Dihydrodipicolinate synthase family protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CQH1_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 9.610e-15
Identity = 78/284 (27.46%), Postives = 90/284 (31.69%), Query Frame = 1
Query:    1 IDELARVDGIRGVTCNGHTIEIMLLGPADRARVMRIVSVAVGAANAETGRPVKAISGVSEEGSQEGIEQALA----------------------------------------------------------------------------------------------------------------------------------------------------------RIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGYVC 390
            I ELA VDG+ G+TCNGHT EIM L PA+R RV +IV+  V AA    GR VK ISGVS EGS EGI+ ALA                                                                                                                                                          RIVY FGEP    H RMK  R ++GKFPSP  RRP+R L+  EI  I+   E+LGY C
Sbjct:   37 IAELAAVDGVDGLTCNGHTGEIMSLRPAERNRVTQIVAETVKAA----GRTVKTISGVSVEGSLEGIDHALAAKDAGADAILLMPPHHWLRFGRSSQTAVGFFEDVASAGIDIVVHQYPAWTKAGYTLDEMKALVQIPRVKCIKMGTRDMSRWLYDYQELKKVNSDVPIITCHDEFLLPSLLEAADGALVGFAGFVPELIVELVQRALDGDLAGAKEVQKKVEPLNRIVYAFGEPSSSAHQRMKCARWLLGKFPSPKMRRPLRDLAPAEIAGIRQGLEALGYEC 316          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A3A0ED40_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0ED40_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.850e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  211 LARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIK 360
            LAR++YNFGEPGC  H RMKV R ++G+FPSP FRRPIR LS+ +++R++
Sbjct:  328 LARLIYNFGEPGCAAHQRMKVARWLLGRFPSPQFRRPIRPLSDADVDRLR 377          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A496AIP6_9BACT (Dihydrodipicolinate synthase family protein n=12 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A496AIP6_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 4.720e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  208 ALARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGYVC 390
            ALARIVYNFGEP  D H RMK  R ++G+FPS   RRP+R LS  E+ +I+ S E+ GY C
Sbjct:  253 ALARIVYNFGEPSSDAHQRMKCARWLMGRFPSMTMRRPLRQLSTAEVGKIRASLEATGYQC 313          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A2E7JM21_9BACT (Dihydrodipicolinate synthase family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E7JM21_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.270e-13
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 IDELARVDGIRGVTCNGHTIEIMLLGPADRARVMRIVSVAVGAANAETGRPVKAISGVSEEGSQEGIEQALA 216
            I ELA V+G++G+TCNGHT EIM L  A+R RV +IV+ A+ A    TGR +K ISGVS EGS EGI+ ALA
Sbjct:   35 IAELASVEGVKGLTCNGHTGEIMSLRFAERNRVTQIVAAAIKA----TGRDIKTISGVSAEGSLEGIDHALA 102          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A5C6CU01_9BACT (Putative DapA-like lyase n=3 Tax=Bythopirellula TaxID=1400386 RepID=A0A5C6CU01_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  211 LARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIK 360
            LA ++Y+FGEPGC  H RMKV R ++GKFPSPHFRRP+  L   E+E+I+
Sbjct:  255 LAHLIYDFGEPGCGAHQRMKVARWLLGKFPSPHFRRPVNPLPATEVEKIR 304          
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Match: A0A2D5YZL0_9PLAN (Dihydrodipicolinate synthase family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5YZL0_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 7.810e-13
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  211 LARIVYNFGEPGCDVHPRMKVDRCVIGKFPSPHFRRPIRSLSEVEIERIKISSESLGY 384
            LAR++Y FGEPG   H RMKV R ++G+F SPHFRRP+R L + EIE+++    ++GY
Sbjct:  286 LARLIYGFGEPGSGAHQRMKVARWLMGRFASPHFRRPMRPLVDSEIEKLREGLRAIGY 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120201.4168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
UPI00029AAFB23.530e-2127.56dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A7Y5C8J3_9BACT2.790e-1859.02Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A7C1HFI6_9BACT8.330e-1659.32Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A838QW41_9BACT7.060e-1560.00Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6B1CQH1_9BACT9.610e-1527.46Dihydrodipicolinate synthase family protein n=3 Ta... [more]
A0A3A0ED40_9BACT2.850e-1462.00Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A496AIP6_9BACT4.720e-1457.38Dihydrodipicolinate synthase family protein n=12 T... [more]
A0A2E7JM21_9BACT1.270e-1359.72Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A5C6CU01_9BACT1.720e-1360.00Putative DapA-like lyase n=3 Tax=Bythopirellula Ta... [more]
A0A2D5YZL0_9PLAN7.810e-1353.45Dihydrodipicolinate synthase family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120201contigM-pyrifera_M_contig120201:3..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score96.7
Seed ortholog evalue9.3e-18
Seed eggNOG ortholog1123242.JH636435_gene770
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EggNOG OGsCOG0329@1,COG0329@2
EC4.3.3.7
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.6532946-CDS-M-pyrifera_M_contig120201:2..4191622815721.6532946-CDS-M-pyrifera_M_contig120201:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120201 3..419 +
1692277538.0259485-CDS-M-pyrifera_M_contig120201:2..4191692277538.0259485-CDS-M-pyrifera_M_contig120201:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120201 3..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120201.4168.1prot_M-pyrifera_M_contig120201.4168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120201 3..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120201.4168.1

>prot_M-pyrifera_M_contig120201.4168.1 ID=prot_M-pyrifera_M_contig120201.4168.1|Name=mRNA_M-pyrifera_M_contig120201.4168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
IDELARVDGIRGVTCNGHTIEIMLLGPADRARVMRIVSVAVGAANAETGR
PVKAISGVSEEGSQEGIEQALARIVYNFGEPGCDVHPRMKVDRCVIGKFP
SPHFRRPIRSLSEVEIERIKISSESLGYVCPTQEGVMA*
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mRNA from alignment at M-pyrifera_M_contig120201:3..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120201.4168.1 ID=mRNA_M-pyrifera_M_contig120201.4168.1|Name=mRNA_M-pyrifera_M_contig120201.4168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig120201:3..419+ (Macrocystis pyrifera P11B4 male)
ATCGACGAACTTGCGCGAGTCGATGGCATCAGAGGTGTGACCTGCAACGG TCACACGATCGAGATCATGTTGCTGGGGCCAGCCGATCGGGCCCGCGTGA TGCGGATTGTGAGCGTAGCGGTCGGAGCCGCGAATGCGGAAACAGGCCGA CCCGTAAAAGCCATCTCAGGAGTCTCGGAGGAAGGCTCACAGGAAGGCAT TGAACAAGCACTGGCCCGCATCGTCTACAACTTTGGCGAACCCGGATGTG ACGTTCACCCGCGGATGAAGGTGGACCGCTGTGTGATAGGTAAGTTTCCG AGCCCGCATTTTCGCAGGCCCATTCGTTCGCTCTCAGAAGTGGAGATCGA GCGGATCAAAATCAGCTCGGAGTCGCTCGGATACGTCTGTCCCACACAAG AGGGTGTCATGGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120201:3..419+

>mRNA_M-pyrifera_M_contig120201.4168.1 ID=mRNA_M-pyrifera_M_contig120201.4168.1|Name=mRNA_M-pyrifera_M_contig120201.4168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig120201:3..419+ (Macrocystis pyrifera P11B4 male)
ATCGACGAACTTGCGCGAGTCGATGGCATCAGAGGTGTGACCTGCAACGG
TCACACGATCGAGATCATGTTGCTGGGGCCAGCCGATCGGGCCCGCGTGA
TGCGGATTGTGAGCGTAGCGGTCGGAGCCGCGAATGCGGAAACAGGCCGA
CCCGTAAAAGCCATCTCAGGAGTCTCGGAGGAAGGCTCACAGGAAGGCAT
TGAACAAGCACTGGCCCGCATCGTCTACAACTTTGGCGAACCCGGATGTG
ACGTTCACCCGCGGATGAAGGTGGACCGCTGTGTGATAGGTAAGTTTCCG
AGCCCGCATTTTCGCAGGCCCATTCGTTCGCTCTCAGAAGTGGAGATCGA
GCGGATCAAAATCAGCTCGGAGTCGCTCGGATACGTCTGTCCCACACAAG
AGGGTGTCATGGCATAGATCGACGAACTTGCGCGAGTCGATGGCATCAGA
GGTGTGACCTGCAACGGTCACACGATCGAGATCATGTTGCTGGGGCCAGC
CGATCGGGCCCGCGTGATGCGGATTGTGAGCGTAGCGGTCGGAGCCGCGA
ATGCGGAAACAGGCCGACCCGTAAAAGCCATCTCAGGAGTCTCGGAGGAA
GGCTCACAGGAAGGCATTGAACAAGCACTGGCCCGCATCGTCTACAACTT
TGGCGAACCCGGATGTGACGTTCACCCGCGGATGAAGGTGGACCGCTGTG
TGATAGGTAAGTTTCCGAGCCCGCATTTTCGCAGGCCCATTCGTTCGCTC
TCAGAAGTGGAGATCGAGCGGATCAAAATCAGCTCGGAGTCGCTCGGATA
CGTCTGTCCCACACAAGAGGGTGTCATGGCATAG
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