mRNA_M-pyrifera_M_contig120056.4141.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120056.4141.1
Unique NamemRNA_M-pyrifera_M_contig120056.4141.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A1E7FYF2_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYF2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.640e-22
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQTLLVLL++ PP EGRRL+V+ TTS P +LED+GL+ AF   Q++P+L EP+    VL VAA   M +D     A+ +  +  GI  K+LL + +MA
Sbjct:  402 IDYVPIGPRFSNAVLQTLLVLLKKVPPDEGRRLMVLGTTSSPHLLEDLGLVQAFGVAQSVPLLDEPKDVCEVLRVAAH--MSKDDARGIAKAIKSKPIGI--KQLLMVAEMA 509
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A448ZP61_9STRA (Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP61_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.870e-22
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQ LLVLL++ PP EGRRL+V+ TTS P +L+D+GL+ AF   Q++P+L EP+    VL VAAK + +ED R  A    A     I +K+LL + +MA
Sbjct:  633 IDYVPIGPRFSNAVLQALLVLLKKIPPDEGRRLMVVGTTSSPHLLKDLGLVQAFGITQSVPLLEEPKDVCEVLRVAAK-MGKEDARSIAK---AIHHKPIGIKQLLMVAEMA 740
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A1Z5KLG0_FISSO (Vesicle-fusing ATPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLG0_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 1.070e-21
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            ++YVPIGPRF+N VLQTLLVLL++ PP +GRRLLVI TTS P +LED+GL +AF   Q++P+L +P Q   VL VAA   M E + +  A+ +A+    I +K+LL + +MA
Sbjct:  632 IEYVPIGPRFSNTVLQTLLVLLKKVPPDDGRRLLVIGTTSVPHLLEDLGLTSAFGIQQSVPLLDQPSQIMEVLRVAAH--MGEKESKSIAKAIAK---PIGIKQLLMVAEMA 738
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7S2MX11_9STRA (Vesicle-fusing ATPase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX11_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.000e-21
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAA 231
            +DYVPIGPRF+N VLQTLLVLL++ PP  GR+LL+I TTS P +LED+GL+ AF+  Q +P+L EP Q + VL VAA
Sbjct:  619 IDYVPIGPRFSNTVLQTLLVLLKKVPPDNGRKLLIIGTTSCPHLLEDLGLVQAFSVQQAVPLLEEPSQIEEVLRVAA 695
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7R9VM01_9STRA (Vesicle-fusing ATPase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM01_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.360e-21
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAER-RDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQ LLVLL++ PP +GRRLLVI TTS P +LED+GL+ AF+  Q++ +L EP Q + VL VAA         ER A  +A+  ++ + +K LL + +MA
Sbjct:  393 IDYVPIGPRFSNTVLQALLVLLKKVPPDDGRRLLVIGTTSVPHLLEDLGLVQAFSLSQSVNLLDEPSQIEEVLRVAAHVS------ERDATAIAKNIKEPVGIKSLLMIAEMA 499
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7R9WX02_9STRA (Vesicle-fusing ATPase n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX02_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.380e-21
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQTLLVLL++ PP EGR+L+VI TTS P +LED+GL  AF   Q++P++ EP++   VL VAA   M+++     A+ +  +  GI  K+LL + +MA
Sbjct:  564 IDYVPIGPRFSNTVLQTLLVLLKKVPPDEGRKLMVIGTTSCPHLLEDLGLTQAFGVAQSMPLIEEPKEVCEVLRVAAG--MQKNDAISIAKAIQNKPIGI--KKLLMIAEMA 671
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7S2EPU7_9STRA (Vesicle-fusing ATPase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPU7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.400e-20
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQTLLVLL++ PP  GR+LL+I TTS P +LED+GL+ AF+  Q++P+L EP Q + VL  AA+  M E   E  ++ + +    I +K LL + +MA
Sbjct:  623 IDYVPIGPRFSNTVLQTLLVLLKKIPPDNGRKLLIIGTTSCPHLLEDLGLVQAFSVQQSVPLLDEPAQIEEVLRHAAQ--MSEYDAESISKAITK---PIGIKTLLMVAEMA 729
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BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: B7G0L9_PHATC (Vesicle-fusing ATPase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0L9_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 2.940e-20
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAER-RDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQTLL+LL++ PP EGRRLLVI TTS P +LED+GL+ AF   Q++P+L +P     VL  AA         E  AQ +A+     I +K+LL + +MA
Sbjct:  403 IDYVPIGPRFSNTVLQTLLILLKKVPPDEGRRLLVIGTTSCPHLLEDLGLVQAFGVTQSIPLLDDPVNVVEVLRTAAH------MSEMDAQAIAKAINKPIGIKQLLMVAEMA 509
[Close]
BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7S1D9D6_CYCTE (Vesicle-fusing ATPase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9D6_CYCTE)

HSP 1 Score: 93.6 bits (231), Expect = 5.350e-20
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGIPVKRLLALVDMA 336
            +DYVPIGPRF+N VLQTLLVLL++ PP EGRRLLVI TTS P +L D+GL  AF   Q +P+L    Q   VL  AA   M + +    A  +++R   I +K+LL +V+MA
Sbjct:  387 IDYVPIGPRFSNTVLQTLLVLLKKVPPDEGRRLLVIGTTSCPELLSDLGLPQAFGVSQDVPLLEHGHQVSTVLQHAAN--MTKKESSEIADAISDR---IGIKKLLLVVEMA 493
[Close]
BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Match: A0A7S1H1D0_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1D0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.200e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGLLAAFTSVQTLPVLREPEQFKAVLDVAA 231
            +DYVPIGPRF+N VLQTLLVLL++ PP + R+LLVI TTS P +L D+G+  AF   Q +P L  PEQ   VL V++
Sbjct:   22 IDYVPIGPRFSNTVLQTLLVLLKKIPPDDDRKLLVIGTTSCPELLGDLGITQAFAVSQEIPALELPEQIAEVLHVSS 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120056.4141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7FYF2_9STRA3.640e-2251.79Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilari... [more]
A0A448ZP61_9STRA7.870e-2251.79Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia mul... [more]
A0A1Z5KLG0_FISSO1.070e-2151.79Vesicle-fusing ATPase n=2 Tax=Fistulifera solaris ... [more]
A0A7S2MX11_9STRA2.000e-2162.34Vesicle-fusing ATPase n=1 Tax=Helicotheca tamesis ... [more]
A0A7R9VM01_9STRA4.360e-2150.44Vesicle-fusing ATPase n=1 Tax=Pseudictyota dubia T... [more]
A0A7R9WX02_9STRA9.380e-2150.00Vesicle-fusing ATPase n=2 Tax=Craspedostauros aust... [more]
A0A7S2EPU7_9STRA2.400e-2050.00Vesicle-fusing ATPase (Fragment) n=2 Tax=Ditylum b... [more]
B7G0L9_PHATC2.940e-2050.44Vesicle-fusing ATPase (Fragment) n=1 Tax=Phaeodact... [more]
A0A7S1D9D6_CYCTE5.350e-2050.89Vesicle-fusing ATPase n=1 Tax=Cyclophora tenuis Ta... [more]
A0A7S1H1D0_9STRA7.200e-2057.14Vesicle-fusing ATPase (Fragment) n=1 Tax=Thalassio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120056contigM-pyrifera_M_contig120056:61..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2850.Phatr12620
Preferred nameNSF
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
EggNOG free text desc.ATPase family associated with various cellular activities (AAA)
EggNOG OGs2XC6A@2836,COG0464@1,KOG0741@2759
EC3.6.4.6
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.432995-CDS-M-pyrifera_M_contig120056:60..3961622815720.432995-CDS-M-pyrifera_M_contig120056:60..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120056 61..396 -
1692277537.5216038-CDS-M-pyrifera_M_contig120056:60..3961692277537.5216038-CDS-M-pyrifera_M_contig120056:60..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120056 61..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120056.4141.1prot_M-pyrifera_M_contig120056.4141.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120056 61..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120056.4141.1

>prot_M-pyrifera_M_contig120056.4141.1 ID=prot_M-pyrifera_M_contig120056.4141.1|Name=mRNA_M-pyrifera_M_contig120056.4141.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MDYVPIGPRFANGVLQTLLVLLRRQPPVEGRRLLVIATTSEPAILEDMGL
LAAFTSVQTLPVLREPEQFKAVLDVAAKDIMEEDQRERAAQQLAERRDGI
PVKRLLALVDMA
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mRNA from alignment at M-pyrifera_M_contig120056:61..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120056.4141.1 ID=mRNA_M-pyrifera_M_contig120056.4141.1|Name=mRNA_M-pyrifera_M_contig120056.4141.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig120056:61..396- (Macrocystis pyrifera P11B4 male)
ATGGACTATGTGCCCATCGGGCCCAGGTTCGCCAACGGAGTGCTGCAGAC
TCTCCTGGTGCTCCTGCGTCGCCAACCGCCCGTCGAAGGGAGGCGCTTGC
TCGTCATCGCCACCACCTCGGAACCGGCCATCCTCGAGGACATGGGCCTG
CTCGCAGCATTCACCTCCGTCCAGACCCTCCCCGTGCTCCGCGAACCAGA
GCAGTTCAAGGCCGTCCTTGACGTGGCTGCCAAGGACATCATGGAGGAGG
ACCAGCGGGAGAGGGCCGCGCAACAGCTCGCAGAGCGCAGGGACGGCATC
CCAGTCAAACGGCTCCTCGCACTCGTCGACATGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120056:61..396-

>mRNA_M-pyrifera_M_contig120056.4141.1 ID=mRNA_M-pyrifera_M_contig120056.4141.1|Name=mRNA_M-pyrifera_M_contig120056.4141.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig120056:61..396- (Macrocystis pyrifera P11B4 male)
ATGGACTATGTGCCCATCGGGCCCAGGTTCGCCAACGGAGTGCTGCAGAC
TCTCCTGGTGCTCCTGCGTCGCCAACCGCCCGTCGAAGGGAGGCGCTTGC
TCGTCATCGCCACCACCTCGGAACCGGCCATCCTCGAGGACATGGGCCTG
CTCGCAGCATTCACCTCCGTCCAGACCCTCCCCGTGCTCCGCGAACCAGA
GCAGTTCAAGGCCGTCCTTGACGTGGCTGCCAAGGACATCATGGAGGAGG
ACCAGCGGGAGAGGGCCGCGCAACAGCTCGCAGAGCGCAGGGACGGCATC
CCAGTCAAACGGCTCCTCGCACTCGTCGACATGGCTATGGACTATGTGCC
CATCGGGCCCAGGTTCGCCAACGGAGTGCTGCAGACTCTCCTGGTGCTCC
TGCGTCGCCAACCGCCCGTCGAAGGGAGGCGCTTGCTCGTCATCGCCACC
ACCTCGGAACCGGCCATCCTCGAGGACATGGGCCTGCTCGCAGCATTCAC
CTCCGTCCAGACCCTCCCCGTGCTCCGCGAACCAGAGCAGTTCAAGGCCG
TCCTTGACGTGGCTGCCAAGGACATCATGGAGGAGGACCAGCGGGAGAGG
GCCGCGCAACAGCTCGCAGAGCGCAGGGACGGCATCCCAGTCAAACGGCT
CCTCGCACTCGTCGACATGGCT
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