mRNA_M-pyrifera_M_contig120016.4131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120016.4131.1
Unique NamemRNA_M-pyrifera_M_contig120016.4131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: W4H6A8_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H6A8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.180e-36
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    7 VGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            V KR DY+SWDDYFMSVAFLS+MRSKDP+TQVGACIV+   +IVGIGYNGFP GC DD LPWAR AESPLDTK
Sbjct:   33 VHKRKDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNAEKKIVGIGYNGFPNGCDDDVLPWARQAESPLDTK 105
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BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: T0QKS5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKS5_SAPDV)

HSP 1 Score: 132 bits (333), Expect = 4.030e-36
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    4 VVGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            +V KRTDY+SWDDYFMSVAFLSAMRSKDP+TQVGACIV++  +IVGIGYNGFP GC DD LPWAR A SPLDTK
Sbjct:  168 LVQKRTDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNSEKKIVGIGYNGFPNGCDDDELPWARSAASPLDTK 241
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: B3S781_TRIAD (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S781_TRIAD)

HSP 1 Score: 127 bits (319), Expect = 6.160e-36
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 EVVGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            EVV KRTDYISW++YFM+VAFLS+ RSKDPNTQVGACIV+  N+IVGIGYNG P GC DD+LPWAR A + LDTK
Sbjct:    8 EVVKKRTDYISWEEYFMAVAFLSSQRSKDPNTQVGACIVNQENKIVGIGYNGMPNGCNDDALPWAREASNALDTK 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A485KHJ6_9STRA (Aste57867_20539 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KHJ6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.750e-36
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    7 VGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            V KR DY+SWDDYFMSVAFLS+MRSKDP+TQVGACIV++  +IVGIGYNGFP GC DD LPWAR AESPLDTK
Sbjct:   30 VVKRQDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNSEKKIVGIGYNGFPNGCDDDVLPWARQAESPLDTK 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A5A8DZ55_CAFRO (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DZ55_CAFRO)

HSP 1 Score: 128 bits (322), Expect = 1.250e-35
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   13 KRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            KR +Y+SWDDYFMS+AFLSA RSKDP+TQVGACIVD  NRIV +GYNGFPRGC+D+ LPWAR A+SPLDTK
Sbjct:   46 KRAEYLSWDDYFMSLAFLSAQRSKDPSTQVGACIVDEDNRIVSVGYNGFPRGCSDEELPWARVADSPLDTK 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A1V9YV68_9STRA (Deoxycytidylate deaminase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YV68_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.940e-35
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   13 KRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            KRTDY+SWDDYFMSVAFLSAMRSKDP+TQVGACIV+   +IVGIGYNGFP GC DD LPWAR A++PL+TK
Sbjct:  148 KRTDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNEEKKIVGIGYNGFPNGCGDDELPWARQADTPLETK 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A6G0XVC9_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVC9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.960e-35
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    7 VGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            V KR DY+SWDDYFMSVAFLS+MRSKDP+TQVGACIV+   +IVGIGYNGFP GC DD LPWAR A+SPLDTK
Sbjct:   28 VQKRQDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNEEKKIVGIGYNGFPNGCDDDLLPWARQADSPLDTK 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A2P6N091_9EUKA (Deoxycytidylate deaminase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N091_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 2.030e-35
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:   13 KRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            KR +Y+SWD+YFMSVAFLSAMRSKDPNTQVGACIV+T NRIVGIGYNG P GC DD  PWARH + PLDTK
Sbjct:    7 KRENYLSWDEYFMSVAFLSAMRSKDPNTQVGACIVNTDNRIVGIGYNGLPTGCEDDQFPWARHGD-PLDTK 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: H3G722_PHYRM (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G722_PHYRM)

HSP 1 Score: 125 bits (313), Expect = 6.330e-35
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   13 KRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHA--ESPLDTK 225
            KR+DY+SWDDYFMSVAFLSAMRSKDP+TQVGACIV    +IVGIGYNGFP GC DD LPWAR +  +SPLDTK
Sbjct:    2 KRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVSPERKIVGIGYNGFPNGCGDDELPWARESATDSPLDTK 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Match: A0A024UFK7_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFK7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.110e-35
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    7 VGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGYNGFPRGCADDSLPWARHAESPLDTK 225
            V KR DY+SWDDYFMSVAFLS+MRSKDP+TQVGACIV+   +IVGIGYNGFP GC DD LPWAR  + PLDTK
Sbjct:   35 VHKRRDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNAEKKIVGIGYNGFPNGCDDDVLPWARQGDCPLDTK 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120016.4131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4H6A8_9STRA1.180e-3680.82CMP/dCMP-type deaminase domain-containing protein ... [more]
T0QKS5_SAPDV4.030e-3681.08Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
B3S781_TRIAD6.160e-3676.00CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A485KHJ6_9STRA6.750e-3680.82Aste57867_20539 protein n=1 Tax=Aphanomyces stella... [more]
A0A5A8DZ55_CAFRO1.250e-3578.87CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1V9YV68_9STRA1.940e-3580.28Deoxycytidylate deaminase n=1 Tax=Thraustotheca cl... [more]
A0A6G0XVC9_9STRA1.960e-3579.45CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A2P6N091_9EUKA2.030e-3580.28Deoxycytidylate deaminase n=1 Tax=Planoprotosteliu... [more]
H3G722_PHYRM6.330e-3578.08CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A024UFK7_9STRA7.110e-3576.71CMP/dCMP-type deaminase domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120016contigM-pyrifera_M_contig120016:249..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.7e-29
Seed eggNOG ortholog112098.XP_008611066.1
Preferred nameDCTD
KEGG rclassRC00074
KEGG koko:K01493
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00429
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dCMP deaminase activity
EggNOG OGsCOG2131@1,KOG3127@2759
EC3.5.4.12
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.9835622-CDS-M-pyrifera_M_contig120016:248..4731622815719.9835622-CDS-M-pyrifera_M_contig120016:248..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120016 249..473 +
1692277537.370773-CDS-M-pyrifera_M_contig120016:248..4731692277537.370773-CDS-M-pyrifera_M_contig120016:248..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120016 249..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120016.4131.1prot_M-pyrifera_M_contig120016.4131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120016 249..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120016.4131.1

>prot_M-pyrifera_M_contig120016.4131.1 ID=prot_M-pyrifera_M_contig120016.4131.1|Name=mRNA_M-pyrifera_M_contig120016.4131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
EVVGKRTDYISWDDYFMSVAFLSAMRSKDPNTQVGACIVDTMNRIVGIGY
NGFPRGCADDSLPWARHAESPLDTK
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mRNA from alignment at M-pyrifera_M_contig120016:249..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120016.4131.1 ID=mRNA_M-pyrifera_M_contig120016.4131.1|Name=mRNA_M-pyrifera_M_contig120016.4131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig120016:249..473+ (Macrocystis pyrifera P11B4 male)
GAGGTGGTAGGAAAAAGGACGGATTATATTTCATGGGACGACTATTTCAT
GTCTGTGGCGTTTTTGAGTGCCATGCGATCCAAAGATCCCAACACTCAGG
TAGGGGCCTGCATTGTGGACACCATGAATCGCATCGTCGGTATCGGGTAC
AATGGGTTTCCAAGAGGTTGCGCAGACGATTCTCTCCCGTGGGCCAGACA
CGCAGAATCTCCACTAGACACTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120016:249..473+

>mRNA_M-pyrifera_M_contig120016.4131.1 ID=mRNA_M-pyrifera_M_contig120016.4131.1|Name=mRNA_M-pyrifera_M_contig120016.4131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig120016:249..473+ (Macrocystis pyrifera P11B4 male)
GAGGTGGTAGGAAAAAGGACGGATTATATTTCATGGGACGACTATTTCAT
GTCTGTGGCGTTTTTGAGTGCCATGCGATCCAAAGATCCCAACACTCAGG
TAGGGGCCTGCATTGTGGACACCATGAATCGCATCGTCGGTATCGGGTAC
AATGGGTTTCCAAGAGGTTGCGCAGACGATTCTCTCCCGTGGGCCAGACA
CGCAGAATCTCCACTAGACACTAAGGAGGTGGTAGGAAAAAGGACGGATT
ATATTTCATGGGACGACTATTTCATGTCTGTGGCGTTTTTGAGTGCCATG
CGATCCAAAGATCCCAACACTCAGGTAGGGGCCTGCATTGTGGACACCAT
GAATCGCATCGTCGGTATCGGGTACAATGGGTTTCCAAGAGGTTGCGCAG
ACGATTCTCTCCCGTGGGCCAGACACGCAGAATCTCCACTAGACACTAAG
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