mRNA_M-pyrifera_M_contig12.4125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12.4125.1
Unique NamemRNA_M-pyrifera_M_contig12.4125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.420e-33
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 PLQGSGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRGCDYDSPSPAFP 231
            PLQGSGV  R+AR IL+IADW   GDLG DEF+LAMYLCRR RLGEGVPSMLEAWMIPP LRE RGC  + PSPA+P
Sbjct:  344 PLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: E5A041_LEPMJ (Similar to UBA/TS-N domain containing protein n=2 Tax=Leptosphaeriaceae TaxID=34374 RepID=E5A041_LEPMJ)

HSP 1 Score: 58.9 bits (141), Expect = 2.830e-8
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRET--RGCDYDSPSPAFP 231
            SG+   V  GI  +AD + +G L +DEFA+AMYL R+ R G+ +P+ L   +IPP LR T  +     SP PA P
Sbjct:  328 SGLPEDVLAGIWDLADINSEGQLSKDEFAVAMYLIRQQRKGDQLPTTLPPSLIPPSLRTTANQAVPIVSPQPAPP 402
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A6A6G759_9PEZI (Uncharacterized protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6G759_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRG 198
            SG++  +   I  +AD   +G L RDEFA+AMYL R+ R G  +P+ L A ++PP +R  +G
Sbjct:  317 SGLSEEILASIWDLADIRSEGQLNRDEFAVAMYLIRQSRSGTSLPAFLPAALVPPAMRNQQG 378
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: UPI001E8DE447 (uncharacterized protein n=1 Tax=Boeremia exigua TaxID=749465 RepID=UPI001E8DE447)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRGCDYDSPSPAFPP 234
            SG+   +  GI  +AD + +G L RDEFA+AMYL R+ R G+ +P  L + +IPP LR        + +P  PP
Sbjct:  329 SGLPEDILAGIWDLADINSEGQLSRDEFAVAMYLIRQQRKGDPLPQTLPSNLIPPGLRTRANQQAPAVAPLPPP 402
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A3M7LY26_9PLEO (EDE1 n=1 Tax=Pyrenophora seminiperda CCB06 TaxID=1302712 RepID=A0A3M7LY26_9PLEO)

HSP 1 Score: 56.6 bits (135), Expect = 1.850e-7
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRE--TRGCDYDSPSPAFP 231
            SG+   V  GI  +AD + +G L +DEFA+AMYL R+ R G+ +P+ L   +IPP LR    +     +P PA P
Sbjct:  635 SGLPEDVLAGIWDLADINSEGQLSKDEFAVAMYLIRQQRKGDQLPTKLPPSLIPPSLRTPANQAMPIPAPQPAPP 709
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A1Y2LVG1_EPING (Uncharacterized protein n=6 Tax=Didymellaceae TaxID=683158 RepID=A0A1Y2LVG1_EPING)

HSP 1 Score: 56.2 bits (134), Expect = 2.520e-7
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRGCDYDSPSPAFPP 234
            SG+   +  GI  +AD + +G L RDEFA+AMYL R+ R G+ +P  L + +IPP LR        +  P  PP
Sbjct:  331 SGLPEDILAGIWDLADINSEGQLSRDEFAVAMYLIRQQRKGDPLPQTLPSNLIPPSLRTRANQQAPAVVPLPPP 404
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A6A5QTE7_AMPQU (Uncharacterized protein n=1 Tax=Ampelomyces quisqualis TaxID=50730 RepID=A0A6A5QTE7_AMPQU)

HSP 1 Score: 56.2 bits (134), Expect = 2.530e-7
Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRGCDYDSPSPA 225
            SG+   +  GI  +AD + +G L +DEFA+AMYL R+ R G+ +P+ L   +IPP LR         P P 
Sbjct:  329 SGLPEDILAGIWDLADINSEGQLSKDEFAVAMYLIRQQRKGDSLPTTLPPSLIPPSLRTAANQSVPVPVPV 399
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BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A178EHJ4_9PLEO (Uncharacterized protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178EHJ4_9PLEO)

HSP 1 Score: 56.2 bits (134), Expect = 2.530e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLR 186
            SG+   V  GI  +AD + +G L RDEFA+AMYL R+ R G+ +P+ L   +IPP LR
Sbjct:  330 SGLPEDVLAGIWDLADINSEGQLSRDEFAVAMYLIRQQRKGDQLPTTLPPQLIPPSLR 387
[Close]
BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A6A6AD87_9PLEO (Uncharacterized protein n=1 Tax=Dothidotthia symphoricarpi CBS 119687 TaxID=1392245 RepID=A0A6A6AD87_9PLEO)

HSP 1 Score: 55.8 bits (133), Expect = 3.450e-7
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLRETRGCDYDSPSPA 225
            SG+   +  GI  +AD + +G L +DEFA+AMYL R+ R G+ +P+ L   +IPP LR         PS A
Sbjct:  323 SGLPEDILAGIWDLADINSEGQLSKDEFAVAMYLIRQQRKGDQLPTTLPPSLIPPSLRTAANQAVPMPSSA 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Match: A0A6A7A0J3_9PLEO (Uncharacterized protein n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A7A0J3_9PLEO)

HSP 1 Score: 55.1 bits (131), Expect = 6.450e-7
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   13 SGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPSMLEAWMIPPRLR 186
            SG+   V  GI  +AD + +G L RDEFA+AMYL R+ R G+ +P+ L   +IPP LR
Sbjct:  329 SGLPEDVLAGIWDLADINSEGQLSRDEFAVAMYLIRQQRKGDQLPTTLPPNLIPPGLR 386
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12.4125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE5.420e-3376.62EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
E5A041_LEPMJ2.830e-844.00Similar to UBA/TS-N domain containing protein n=2 ... [more]
A0A6A6G759_9PEZI1.350e-741.94Uncharacterized protein n=2 Tax=Elsinoe TaxID=4099... [more]
UPI001E8DE4471.350e-740.54uncharacterized protein n=1 Tax=Boeremia exigua Ta... [more]
A0A3M7LY26_9PLEO1.850e-741.33EDE1 n=1 Tax=Pyrenophora seminiperda CCB06 TaxID=1... [more]
A0A1Y2LVG1_EPING2.520e-740.54Uncharacterized protein n=6 Tax=Didymellaceae TaxI... [more]
A0A6A5QTE7_AMPQU2.530e-739.44Uncharacterized protein n=1 Tax=Ampelomyces quisqu... [more]
A0A178EHJ4_9PLEO2.530e-748.28Uncharacterized protein n=1 Tax=Pyrenochaeta sp. D... [more]
A0A6A6AD87_9PLEO3.450e-740.85Uncharacterized protein n=1 Tax=Dothidotthia symph... [more]
A0A6A7A0J3_9PLEO6.450e-748.28Uncharacterized protein n=1 Tax=Ophiobolus dissemi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12contigM-pyrifera_M_contig12:2967..4309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.1
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog13684.SNOT_05620
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006897,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0010564,GO:0015629,GO:0016043,GO:0016192,GO:0023052,GO:0030427,GO:0030479,GO:0030863,GO:0030864,GO:0030968,GO:0032182,GO:0032465,GO:0032467,GO:0032879,GO:0032880,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042221,GO:0042995,GO:0043130,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043332,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045787,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051302,GO:0051716,GO:0051726,GO:0051781,GO:0061645,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0090068,GO:0098657,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.Eps15 homology domain
EggNOG OGs1ZXDZ@147541,38GSU@33154,3NY8Z@4751,3QK0G@4890,4KECT@92860,KOG0998@1,KOG0998@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_002950.1
COG Functional cat.TU
Best tax levelPleosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.7063148-CDS-M-pyrifera_M_contig12:2966..30731622815719.7063148-CDS-M-pyrifera_M_contig12:2966..3073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12 2967..3073 +
1692277537.2827976-CDS-M-pyrifera_M_contig12:2966..30731692277537.2827976-CDS-M-pyrifera_M_contig12:2966..3073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12 2967..3073 +
1622815719.7173095-CDS-M-pyrifera_M_contig12:4173..43091622815719.7173095-CDS-M-pyrifera_M_contig12:4173..4309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12 4174..4309 +
1692277537.2926555-CDS-M-pyrifera_M_contig12:4173..43091692277537.2926555-CDS-M-pyrifera_M_contig12:4173..4309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12 4174..4309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12.4125.1prot_M-pyrifera_M_contig12.4125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12 2967..4309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12.4125.1

>prot_M-pyrifera_M_contig12.4125.1 ID=prot_M-pyrifera_M_contig12.4125.1|Name=mRNA_M-pyrifera_M_contig12.4125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
PLQGSGVTGRVARGILRIADWHEDGDLGRDEFALAMYLCRRHRLGEGVPS
MLEAWMIPPRLRETRGCDYDSPSPAFPPRL*
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mRNA from alignment at M-pyrifera_M_contig12:2967..4309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12.4125.1 ID=mRNA_M-pyrifera_M_contig12.4125.1|Name=mRNA_M-pyrifera_M_contig12.4125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1343bp|location=Sequence derived from alignment at M-pyrifera_M_contig12:2967..4309+ (Macrocystis pyrifera P11B4 male)
CCTCTCCAAGGCTCCGGGGTGACAGGACGCGTCGCGCGAGGCATCCTGCG
GATAGCGGACTGGCATGAGGACGGGGACCTCGGTCGTGACGAGTTTGCCC
TCGCAATGTGAGTCGCCCTGCCCGCCCATCGGCCCCCGCTCGCCGGCCCG
CCCTCCCGCCGGCCTTCTCGCCTTGGTAAATGAAATGCTATTTTGTGTGT
GTGCGTATTTAATGATTTTTGTCGGGTGTACGTGTGCGTAGTGTTATTTA
CTTATGTTGTCGAATCGAGCTGTTTCGTCTATTTTGCTTTTGTCAACGCT
ACGTAACCGTTTTTTTTGTTTTGTTTTGTTTTTTTGTCTTTTTCATTTTT
GTTTAATTGTTATTTTTGTTATTGTGTGATGTTCTGTTGTTTCGCTGGTA
TGTGTATCGTACCTGGTAGGTGTCATTTTGTTTTGTACGTATACTACTGT
GAGTTTATATAATAGTTGTGTGTGCTTGTTTTTTTACTCTGTTTAGTCTC
TTGTGAAACGAAGGTATTTGCCGTCTTTATTTGCGTGTGTTTGTGTGTGT
GTGTGTTTTTTTTGTTTCCTTCTGCACCGACATTTTTCTGTACCATACCG
TCAAGGCTCGAAAGCCCGCTCGTTTTCGTGCAGGATTTCCTGTAGAAACC
GCTCTCTGCGCGTGTCCACCATGTCCTCACCATGTTTTTGGCAGTACATA
AAACACCGGCACCTTGCTTCCCTCAACATGGAAGTTCGGTGACTTGGTGC
AGGAGTCCTGTAAACGCCGCTCGCCGCGGTCACTCACCATGCCTGCCTGA
CACCAATATATTCACAACAACTCGGGACAGATCATGTACAGATCATGTAC
AGATCATCTGCAGATCGTTCCCGCTTCATGAGCTACTGTAGATCAATAGA
GGCAGATAGATCCGTTCCCGGGCTTGTATTGATCTAGCTCATGTTGCCGG
GTGGAACCTGTGTCGTACACGTGATAGATTTTAACGCGCAAACGTTTCCT
GGGTTGGGTCTCTACTGTTACGGGGGGCCATAGTAAATAGGACCAAATAT
TGTTAACAAAAATATATAAATATGCAGGTTTTTGTGTGTACCGTAGGTCC
TATTTACTATGGTCCCCCGTAATAGGGAGATCTTGTACAACTTTTCACAG
CGGCAGGCTAGGGTGTGATTTTTCCAATTTTCTCACTTTTCCCAATTTTT
CCCTCAGGTACCTTTGCCGACGGCACCGGCTGGGTGAGGGCGTTCCATCG
ATGCTGGAGGCGTGGATGATACCGCCGAGACTGCGCGAGACCAGGGGATG
CGACTACGACAGCCCCTCCCCTGCATTCCCGCCCCGGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12:2967..4309+

>mRNA_M-pyrifera_M_contig12.4125.1 ID=mRNA_M-pyrifera_M_contig12.4125.1|Name=mRNA_M-pyrifera_M_contig12.4125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig12:2967..4309+ (Macrocystis pyrifera P11B4 male)
CCTCTCCAAGGCTCCGGGGTGACAGGACGCGTCGCGCGAGGCATCCTGCG
GATAGCGGACTGGCATGAGGACGGGGACCTCGGTCGTGACGAGTTTGCCC
TCGCAATCCTCTCCAAGGCTCCGGGGTGACAGGACGCGTCGCGCGAGGCA
TCCTGCGGATAGCGGACTGGCATGAGGACGGGGACCTCGGTCGTGACGAG
TTTGCCCTCGCAATGTACCTTTGCCGACGGCACCGGCTGGGTGAGGGCGT
TCCATCGATGCTGGAGGCGTGGATGATACCGCCGAGACTGCGCGAGACCA
GGGGATGCGACTACGACAGCCCCTCCCCTGCATTCCCGCCCCGGCTCTGA
GTACCTTTGCCGACGGCACCGGCTGGGTGAGGGCGTTCCATCGATGCTGG
AGGCGTGGATGATACCGCCGAGACTGCGCGAGACCAGGGGATGCGACTAC
GACAGCCCCTCCCCTGCATTCCCGCCCCGGCTCTGA
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