mRNA_M-pyrifera_M_contig119972.4117.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119972.4117.1
Unique NamemRNA_M-pyrifera_M_contig119972.4117.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119972.4117.1 vs. uniprot
Match: UPI001C00E2E8 (polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Leptothoe kymatousa TaxID=2651727 RepID=UPI001C00E2E8)

HSP 1 Score: 53.1 bits (126), Expect = 8.280e-6
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 LEKEREILASLPVAEKALDIVGAERVDGGTAL--SLLSPISVEFRPDSEVLNLSYTSTDPELARDAVNAFADTYV---LQRNNAA 240
            L+ + E+  S+P+A++ ++ +  E  +G T     LL  ++V   P ++VLN++YTS DPELA+  VN+  + Y+   +Q N AA
Sbjct:   88 LDTQIEVFRSVPIAQEVIEKLNLEDDEGETLSPEDLLKELTVTGIPGTDVLNVTYTSDDPELAKTIVNSITELYIQNDIQANRAA 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119972.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C00E2E88.280e-635.29polysaccharide biosynthesis tyrosine autokinase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119972contigM-pyrifera_M_contig119972:104..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.3581953-CDS-M-pyrifera_M_contig119972:103..4301622815719.3581953-CDS-M-pyrifera_M_contig119972:103..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119972 104..430 -
1692277537.1468043-CDS-M-pyrifera_M_contig119972:103..4301692277537.1468043-CDS-M-pyrifera_M_contig119972:103..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119972 104..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119972.4117.1prot_M-pyrifera_M_contig119972.4117.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119972 104..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119972.4117.1

>prot_M-pyrifera_M_contig119972.4117.1 ID=prot_M-pyrifera_M_contig119972.4117.1|Name=mRNA_M-pyrifera_M_contig119972.4117.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LEKEREILASLPVAEKALDIVGAERVDGGTALSLLSPISVEFRPDSEVLN
LSYTSTDPELARDAVNAFADTYVLQRNNAANDFYDDRIAATTILIDELQI
DIDAGEAAL
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mRNA from alignment at M-pyrifera_M_contig119972:104..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119972.4117.1 ID=mRNA_M-pyrifera_M_contig119972.4117.1|Name=mRNA_M-pyrifera_M_contig119972.4117.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig119972:104..430- (Macrocystis pyrifera P11B4 male)
CTCGAGAAGGAGCGCGAGATTCTGGCTTCCCTCCCGGTGGCAGAGAAAGC
TCTCGACATCGTCGGTGCCGAACGGGTCGATGGTGGGACTGCCCTGTCGC
TGCTGTCGCCGATCTCCGTCGAGTTCCGACCCGATTCCGAGGTGCTCAAT
CTGTCGTACACCTCGACCGATCCCGAGCTCGCTCGCGATGCCGTCAATGC
GTTCGCCGACACCTACGTGTTGCAGCGAAACAATGCGGCGAACGACTTCT
ACGACGATCGGATCGCGGCCACGACCATCCTGATCGACGAGCTGCAGATC
GACATCGACGCCGGTGAGGCTGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119972:104..430-

>mRNA_M-pyrifera_M_contig119972.4117.1 ID=mRNA_M-pyrifera_M_contig119972.4117.1|Name=mRNA_M-pyrifera_M_contig119972.4117.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig119972:104..430- (Macrocystis pyrifera P11B4 male)
CTCGAGAAGGAGCGCGAGATTCTGGCTTCCCTCCCGGTGGCAGAGAAAGC
TCTCGACATCGTCGGTGCCGAACGGGTCGATGGTGGGACTGCCCTGTCGC
TGCTGTCGCCGATCTCCGTCGAGTTCCGACCCGATTCCGAGGTGCTCAAT
CTGTCGTACACCTCGACCGATCCCGAGCTCGCTCGCGATGCCGTCAATGC
GTTCGCCGACACCTACGTGTTGCAGCGAAACAATGCGGCGAACGACTTCT
ACGACGATCGGATCGCGGCCACGACCATCCTGATCGACGAGCTGCAGATC
GACATCGACGCCGGTGAGGCTGCGCTGCTCGAGAAGGAGCGCGAGATTCT
GGCTTCCCTCCCGGTGGCAGAGAAAGCTCTCGACATCGTCGGTGCCGAAC
GGGTCGATGGTGGGACTGCCCTGTCGCTGCTGTCGCCGATCTCCGTCGAG
TTCCGACCCGATTCCGAGGTGCTCAATCTGTCGTACACCTCGACCGATCC
CGAGCTCGCTCGCGATGCCGTCAATGCGTTCGCCGACACCTACGTGTTGC
AGCGAAACAATGCGGCGAACGACTTCTACGACGATCGGATCGCGGCCACG
ACCATCCTGATCGACGAGCTGCAGATCGACATCGACGCCGGTGAGGCTGC
GCTG
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