mRNA_M-pyrifera_M_contig11943.4008.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11943.4008.1
Unique NamemRNA_M-pyrifera_M_contig11943.4008.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: D8LGF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF6_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 4.380e-73
Identity = 117/153 (76.47%), Postives = 133/153 (86.93%), Query Frame = 1 
Query:    1 QRDFLLDNVLYSAFNTIGRAQFNILQEKGLDSACWRYAASSIGADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASSLATFDRAERSLEKQEQV 459
            +RDFLLD+ LYS FNTI  AQF+ILQEKGLDSACWR AA SI ADCETM+H RKQRLA+QL+NCHLQ   DSGR+   C+ +DSDE CV+++  ++ AFQSYTTFFHHVNAICHHL HT+WQEQTEGLVRGLTASSLATFDRAE+SLEKQEQV
Sbjct:   63 RRDFLLDDALYSVFNTIATAQFDILQEKGLDSACWRQAAVSIDADCETMAHARKQRLAVQLSNCHLQ---DSGRKPIECTPRDSDESCVKKLGDDNAAFQSYTTFFHHVNAICHHLRHTVWQEQTEGLVRGLTASSLATFDRAEQSLEKQEQV 212
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: UPI0005CBBCA3 (uncharacterized protein LOC101161666 isoform X2 n=1 Tax=Oryzias latipes TaxID=8090 RepID=UPI0005CBBCA3)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-9
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:  100 CWRYAASSIGADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASS 408
            CW  A   +G  C+ M+   ++ +A++  +CHL +S   GR    C       RC   M  + VAF ++T FF H NAICH L    WQ + E  +  LT +S
Sbjct:   52 CWARALKELGVRCKDMTSESQRLMALRFTHCHLSSS---GRDFPACPEGSDVSRCTGGM--DAVAFNTFTEFFTHTNAICHFLQSEAWQNRAEDTMSKLTETS 149
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: H2MJL5_ORYLA (Uncharacterized LOC101161666 n=3 Tax=Oryzias latipes TaxID=8090 RepID=H2MJL5_ORYLA)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-9
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:  100 CWRYAASSIGADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASS 408
            CW  A   +G  C+ M+   ++ +A++  +CHL +S   GR    C       RC   M  + VAF ++T FF H NAICH L    WQ + E  +  LT +S
Sbjct:   52 CWARALKELGVRCKDMTSESQRLMALRFTHCHLSSS---GRDFPACPEGSDVSRCTGGM--DAVAFNTFTEFFTHTNAICHFLQSEAWQNRAEDTMSKLTETS 149
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: A0A8J6B8E2_9EUKA (Gamete expressed 1 n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6B8E2_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-8
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   37 AFNTI---GRAQFNILQEKGLDSACWRYAASSI--GADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASS 408
            A NT+   G +    ++E+ + S C++    ++  G  C+ M    +QRLA +L NCHL+ S   G  T  C   ++  RC + M    +AF +YT+FF H++ +C  LS   +Q++ E  +  L  +S
Sbjct:   26 AANTLLSSGESLVEEMEEQSVMSPCYKRVFRTLTKGKGCKHMKDHDQQRLAFELANCHLERS---GLDTFPCKRSENIARCTQRMSALPIAFDTYTSFFLHLDDLCFFLSQKDFQDEAEKTINRLYDAS 151
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: UPI000C6E82F7 (uncharacterized protein LOC111620155 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E82F7)

HSP 1 Score: 62.4 bits (150), Expect = 1.360e-8
Identity = 41/137 (29.93%), Postives = 66/137 (48.18%), Query Frame = 1 
Query:   52 GRAQFNILQEK-GLDSACWRYAASSIGADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASSLATFDRAERSLEKQEQV 459
            G+ ++ +L+ +  L   CW  A   +   C+ ++   + RLA     C L   L  G +   C        C+++M  N+  F SYT FF H  +IC  L   +WQ + EG VR L+A+S     + E + EKQ ++
Sbjct:   45 GKNRYELLRNQIPLYGDCWIKAVEELHLGCKQLNEEIQSRLAFSFARCFL---LKLGLKIDPCPSHVDIAECMKDM--NERIFTSYTEFFTHTQSICFFLQSQVWQNEVEGTVRKLSATSKRLSYKLELASEKQMEI 176
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BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Match: A4VDU4_TETTS (Transmembrane protein, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=A4VDU4_TETTS)

HSP 1 Score: 54.7 bits (130), Expect = 7.930e-6
Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:   64 FNILQEKGLDSACWRYAASSIGADCETMSHVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQSYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASS 408
            F  L        C       I +DC+ +S  +K RL+++L NC L   + S +R   CS     E C +E+  N  ++ +Y++F+ H++ IC +     WQ++T+ L+  L  +S
Sbjct:   33 FVYLNNLSKTDGCAYQLIKDISSDCKQLSEDQKSRLSLKLTNCLL---IRSSKRQIVCSDDVQFEICSQEL--NGDSWNTYSSFYMHIDNICFYYQALNWQKETQQLISNLLDNS 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11943.4008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGF6_ECTSI4.380e-7376.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0005CBBCA31.400e-934.95uncharacterized protein LOC101161666 isoform X2 n=... [more]
H2MJL5_ORYLA1.470e-934.95Uncharacterized LOC101161666 n=3 Tax=Oryzias latip... [more]
A0A8J6B8E2_9EUKA1.010e-831.01Gamete expressed 1 n=1 Tax=Carpediemonas membranif... [more]
UPI000C6E82F71.360e-829.93uncharacterized protein LOC111620155 n=2 Tax=Centr... [more]
A4VDU4_TETTS7.930e-628.70Transmembrane protein, putative n=1 Tax=Tetrahymen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11943contigM-pyrifera_M_contig11943:6442..9184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue9.7e-61
Seed eggNOG ortholog2880.D8LGF6
KEGG koko:K18171,ko:K18626
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007275,GO:0008150,GO:0009553,GO:0009555,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0016020,GO:0016021,GO:0022414,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071944
EggNOG OGs28IPK@1,2QR0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04812
Exons4
Model size459
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11943.4008.1prot_M-pyrifera_M_contig11943.4008.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11943 6442..9184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.09979-CDS-M-pyrifera_M_contig11943:6441..64881622815714.09979-CDS-M-pyrifera_M_contig11943:6441..6488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 6442..6488 +
1692277534.9015906-CDS-M-pyrifera_M_contig11943:6441..64881692277534.9015906-CDS-M-pyrifera_M_contig11943:6441..6488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 6442..6488 +
1622815714.1095107-CDS-M-pyrifera_M_contig11943:6931..70941622815714.1095107-CDS-M-pyrifera_M_contig11943:6931..7094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 6932..7094 +
1692277534.9130592-CDS-M-pyrifera_M_contig11943:6931..70941692277534.9130592-CDS-M-pyrifera_M_contig11943:6931..7094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 6932..7094 +
1622815714.118738-CDS-M-pyrifera_M_contig11943:8119..82331622815714.118738-CDS-M-pyrifera_M_contig11943:8119..8233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 8120..8233 +
1692277534.9245446-CDS-M-pyrifera_M_contig11943:8119..82331692277534.9245446-CDS-M-pyrifera_M_contig11943:8119..8233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 8120..8233 +
1622815714.1278503-CDS-M-pyrifera_M_contig11943:9049..91841622815714.1278503-CDS-M-pyrifera_M_contig11943:9049..9184Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 9050..9184 +
1692277534.939846-CDS-M-pyrifera_M_contig11943:9049..91841692277534.939846-CDS-M-pyrifera_M_contig11943:9049..9184Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11943 9050..9184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11943.4008.1

>prot_M-pyrifera_M_contig11943.4008.1 ID=prot_M-pyrifera_M_contig11943.4008.1|Name=mRNA_M-pyrifera_M_contig11943.4008.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
QRDFLLDNVLYSAFNTIGRAQFNILQEKGLDSACWRYAASSIGADCETMS
HVRKQRLAIQLNNCHLQASLDSGRRTTRCSLKDSDERCVEEMQHNDVAFQ
SYTTFFHHVNAICHHLSHTMWQEQTEGLVRGLTASSLATFDRAERSLEKQ
EQV
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mRNA from alignment at M-pyrifera_M_contig11943:6442..9184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11943.4008.1 ID=mRNA_M-pyrifera_M_contig11943.4008.1|Name=mRNA_M-pyrifera_M_contig11943.4008.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2743bp|location=Sequence derived from alignment at M-pyrifera_M_contig11943:6442..9184+ (Macrocystis pyrifera P11B4 male)
CAGCGAGACTTCCTGCTAGATAACGTGCTGTACTCGGCTTTCAATACGTG
AGCACGATGAGTAGCGGTGTGTATTTGGGCGAGTGGGCGTGTCTGGCATC
GTCCCTCGTCAGGCCTCAGTCTTTTTATTCCAACACTATTTGTGTGGCCA
AATTTCGGCAGGCGGGCGTCGCATCAGCCCCAAGGACACCAACAAAGTAC
TGTAGCACGAGTAAAAGTAACTTGGAAGTATAATTCAAATATGTGAAAAA
ACATATCTCTTGTCAACTCGTGGGAAGGTTTACCCTCAGCCGCCTTCTGG
ACAAGCCGTGATCTGTCACAGACTGGTGTCTTCTTTTCCCGCCCGCGGTA
TTTCGTTTATTTGTAGGAGCTACGTACGTACGAGTAACGTGTGGCGTTCA
CGGTGAGGTACTGTAGCCTGTCTTGAATGCCGCCATAGACAGTTTGGTCT
TGAGGTACAACCCGACGGCTAACGATTAAAACGCAACCAGGATCGGCCGG
GCGCAGTTCAACATCCTCCAGGAGAAGGGGCTGGACAGCGCTTGCTGGAG
GTATGCGGCGTCCTCTATCGGCGCCGACTGCGAGACCATGTCGCACGTTC
GCAAACAGCGCCTGGCAATTCAGCTGAACAACTGCCACCTACAGGCAAGT
CTAGTTGCCATACTGTCACCCTATCCCTATTCGTTTCACTGCGAACAGAG
GCAAGGTTGATGATACATTGTGTCTGGCCTGCCCTTGCAAGTATACCCAG
GCTTGAGGTTTAAGGGCTAGCGTTAGGCGCTCGCGTCGTTGCACCTACTG
TGGGGTATCGAGTGTGCCTTTCGCCCATTGTTGTGCATGCCGCAACATTT
TTTTTCTTCTTGACATTTTGGCATTTGGTGGGACCTGTTACGGAGCGAAA
ATGGTACATCCGTGTACACAGAAGATGCTCAGAGCCTTCCGCGCTTTCGC
ACACTCTGCATTTTTCTGGGTGCCACCGTCCGTGTGACGCCCGCGTTCTT
CTACCAGGACGGGACAGAAACCAGCTTTGAACCCAAAAGGTGATCGGCGT
TTCGGTATATAGGCGCTTAATGCTCCCGTCGAACATTTTGCACAGGGTAA
CAGTAACATACAGCAGTTTGCCTGCAATGTCATTATCCGGGCCATACGCG
TAGCAAAGTAAATCTTCTGCAGTCGAAACAACAGTCTGTTTTACGCCTGC
ATAACTTATCCCACCCTATGTACCGTGAATCCAAGTAGGAAGCCGTAAAG
AAATGAGGGTGTAAGTATAAGGGGGTGTTCACCGATGTATGAGCAGTACG
ACTGGGCAACGTCATCGTAGGGGTGAGGTGCCAATTTTTACACGAGTAGC
TCAATACCTCACCCGAAACATGACTTCGAAATAAGTTTATTAGCGGAATC
TGACGAGTGTTTCTATGCGCTAGCCCTAAAAACAATACCTGATATATTCT
AGTGTAGCAAATTTTCCGTACTAACCGTTAGAGTGCTCACTTGAGGAGCT
CATGCCGGTCAGGAAATATTGAGCCAAATAACGGTATACCGTAGGAATAA
TACGAAAAAGTATCATACTGCCGGTAGAGTGCTCACTTGAGGAGCTCAGT
CGATCAGGATTTTTGTAGTAAAAAAACGGTATACCGTAGGATGAGTCGAA
CGGGCGTATTGCTTGTCTCCCTTGACAGGATTCCGGTCGGAGGACGACCC
GATGCAGTCTCAAGGACAGCGACGAGCGGTGCGTGGAGGAGATGCAGCAC
AATGATGTCGCCTTCCAGAGCTACACCACGTTCTTCCACCACGTGAGACA
ATGATGATAAACATTAGTGTTGGCGTGAACTCCGAAAGCTCTCTGAAGTG
ATCAGCACATTGTTTACCCGACGTAAAAAAACAAGTATCATTCAGCCGCA
TCGCGTGGAGCCTGTGTCTTCCATGAGTACTTTAGCATGCAGCTTACAAC
GTTGACTATCGACCTGGTGGGGAGATCCTACAGCTGACTGGCGTAGTTGC
TAAGTTTTTATTAACTTAACTACTGAAGTGATATACCATCCATGGCTTGG
CCACTTTGGTCAACTTCGTCCAAATCCTGAGCTTTCTTGCGATGCGTACA
ACTTGGGGACAGGACATGAGCGCGATTACAGCACACCACTAGCACACCAC
CCCTCGCTTTCCCACCCCCCTCGGTGCGAGCTACGTACGATATCCCAGCG
CGATACTTTTGAGCCACCATCTGCAAACCCCAATGGAGGCATGAAACCCG
TGAAAACGTTTCGGGCAGGGAAAAAAACGCGACCCTTACCGTATCTCATT
TTCCGAAAACACGTGACCAAACAGCATTAGCTCCCCCCCCCCCCGTCATT
CCAGCGTTACATTGTTTTGAGCCACCGTTTGCAAACCCCAATGGAGGCAT
AAAAGCCGTGACAACCGTCAGAAGGCAGAAAAATACTCCATCCTTTTGTG
GCGTATATCATTTTCAAAAACGAGTGACCGAAACAGCTGTACACCAGGTA
CTGCTTTGTGACAGCCTGAGGGGATGCTGGCGTCAGCTCGCTTGTTCCTT
CCAACTACCCGCCCGCCCTCTTTCCCCCCCCTTATCTCTGCCTTTCTCGC
TTTCTCAGGTGAATGCCATCTGCCACCACCTGAGCCACACGATGTGGCAG
GAGCAGACGGAAGGGCTAGTGCGAGGGCTGACGGCGTCGTCGCTGGCTAC
GTTCGACAGGGCGGAGCGATCCCTCGAGAAGCAAGAGCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11943:6442..9184+

>mRNA_M-pyrifera_M_contig11943.4008.1 ID=mRNA_M-pyrifera_M_contig11943.4008.1|Name=mRNA_M-pyrifera_M_contig11943.4008.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig11943:6442..9184+ (Macrocystis pyrifera P11B4 male)
CAGCGAGACTTCCTGCTAGATAACGTGCTGTACTCGGCTTTCAATACCAG
CGAGACTTCCTGCTAGATAACGTGCTGTACTCGGCTTTCAATACGATCGG
CCGGGCGCAGTTCAACATCCTCCAGGAGAAGGGGCTGGACAGCGCTTGCT
GGAGGTATGCGGCGTCCTCTATCGGCGCCGACTGCGAGACCATGTCGCAC
GTTCGCAAACAGCGCCTGGCAATTCAGCTGAACAACTGCCACCTACAGGC
AAGTCTAGATCGGCCGGGCGCAGTTCAACATCCTCCAGGAGAAGGGGCTG
GACAGCGCTTGCTGGAGGTATGCGGCGTCCTCTATCGGCGCCGACTGCGA
GACCATGTCGCACGTTCGCAAACAGCGCCTGGCAATTCAGCTGAACAACT
GCCACCTACAGGCAAGTCTAGATTCCGGTCGGAGGACGACCCGATGCAGT
CTCAAGGACAGCGACGAGCGGTGCGTGGAGGAGATGCAGCACAATGATGT
CGCCTTCCAGAGCTACACCACGTTCTTCCACCACGATTCCGGTCGGAGGA
CGACCCGATGCAGTCTCAAGGACAGCGACGAGCGGTGCGTGGAGGAGATG
CAGCACAATGATGTCGCCTTCCAGAGCTACACCACGTTCTTCCACCACGT
GAATGCCATCTGCCACCACCTGAGCCACACGATGTGGCAGGAGCAGACGG
AAGGGCTAGTGCGAGGGCTGACGGCGTCGTCGCTGGCTACGTTCGACAGG
GCGGAGCGATCCCTCGAGAAGCAAGAGCAGGTGGTGAATGCCATCTGCCA
CCACCTGAGCCACACGATGTGGCAGGAGCAGACGGAAGGGCTAGTGCGAG
GGCTGACGGCGTCGTCGCTGGCTACGTTCGACAGGGCGGAGCGATCCCTC
GAGAAGCAAGAGCAGGTG
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