mRNA_M-pyrifera_M_contig119429.4006.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119429.4006.1
Unique NamemRNA_M-pyrifera_M_contig119429.4006.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119429.4006.1 vs. uniprot
Match: A0A644WZ40_9ZZZZ (Secretory immunoglobulin A-binding protein EsiB n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A644WZ40_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 6.850e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   28 QGEARSQYLLGRQYLLGTGVEQSNEEALRWYHLAAEKGDQDAMRGIGII 174
            QG+A +QY LG  Y +G GV Q N+EA++W+ LAAEKG   A   IG++
Sbjct:   54 QGDADAQYELGCMYFIGQGVPQDNDEAIKWFRLAAEKGHAAAQNNIGVM 102
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BLAST of mRNA_M-pyrifera_M_contig119429.4006.1 vs. uniprot
Match: A0A1I5VUF0_9RHOB (Sel1 repeat-containing protein n=2 Tax=Tranquillimonas alkanivorans TaxID=441119 RepID=A0A1I5VUF0_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 2.090e-5
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 VRWFRKAARQGEARSQYLLGRQYLLGTGVEQSNEEALRWYHLAAEKGDQDAMRGIGIILDLQGD 192
            VRWFR+AAR G+AR+ + LG   L G GV+    EALRW   AA +G  +    +G +    GD
Sbjct:   78 VRWFRRAARSGDARAMHNLGLMLLRGQGVQVDRAEALRWLEAAAARGVAETALALGNLARAGGD 141
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BLAST of mRNA_M-pyrifera_M_contig119429.4006.1 vs. uniprot
Match: A0A7S4UA39_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UA39_GUITH)

HSP 1 Score: 52.4 bits (124), Expect = 7.230e-5
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 VRWFRKAARQGEARSQYLLGRQYLLGT-GVEQSNEEALRWYHLAAEKGDQDAMRGIG 168
            V +++ +A +G+A +Q  LG+ Y  G  G+EQ+  EALRWY LAAE+GD +A+  IG
Sbjct:  585 VNYYQYSAARGDAAAQVALGQLYYFGARGIEQNYAEALRWYELAAEQGDPNALGHIG 641
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BLAST of mRNA_M-pyrifera_M_contig119429.4006.1 vs. uniprot
Match: A0A7S0F6V7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F6V7_9CRYP)

HSP 1 Score: 52.4 bits (124), Expect = 7.230e-5
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 VRWFRKAARQGEARSQYLLGRQYLLGT-GVEQSNEEALRWYHLAAEKGDQDAMRGIG 168
            V +++ +A +G+A +Q  LG+ Y  G  G+EQ+  EALRWY LAAE+GD +A+  IG
Sbjct:  586 VNYYQYSAARGDAAAQVALGQLYYFGARGIEQNYAEALRWYELAAEQGDANALGHIG 642
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119429.4006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A644WZ40_9ZZZZ6.850e-651.02Secretory immunoglobulin A-binding protein EsiB n=... [more]
A0A1I5VUF0_9RHOB2.090e-543.75Sel1 repeat-containing protein n=2 Tax=Tranquillim... [more]
A0A7S4UA39_GUITH7.230e-547.37Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0F6V7_9CRYP7.230e-547.37Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119429contigM-pyrifera_M_contig119429:62..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.98375-CDS-M-pyrifera_M_contig119429:61..5441622815713.98375-CDS-M-pyrifera_M_contig119429:61..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119429 62..544 -
1692277534.844864-CDS-M-pyrifera_M_contig119429:61..5441692277534.844864-CDS-M-pyrifera_M_contig119429:61..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119429 62..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119429.4006.1prot_M-pyrifera_M_contig119429.4006.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119429 62..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119429.4006.1

>prot_M-pyrifera_M_contig119429.4006.1 ID=prot_M-pyrifera_M_contig119429.4006.1|Name=mRNA_M-pyrifera_M_contig119429.4006.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
VRWFRKAARQGEARSQYLLGRQYLLGTGVEQSNEEALRWYHLAAEKGDQD
AMRGIGIILDLQGDSHEEALQWYMRSYEKGDSEAARLIGLLHDNGRGVEK
SHEEAARWYSIAAELGNSEAYRILGVRYDNGLGVEQDYEKATEYYLKAGA
LGDGGGYCCAG
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mRNA from alignment at M-pyrifera_M_contig119429:62..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119429.4006.1 ID=mRNA_M-pyrifera_M_contig119429.4006.1|Name=mRNA_M-pyrifera_M_contig119429.4006.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig119429:62..544- (Macrocystis pyrifera P11B4 male)
GTGCGCTGGTTCCGCAAGGCCGCCAGGCAGGGTGAGGCGAGGTCTCAGTA
TCTGCTCGGGCGTCAGTACCTTCTCGGCACTGGTGTAGAGCAGAGCAATG
AGGAGGCTCTCCGCTGGTACCACCTGGCAGCTGAGAAGGGTGACCAGGAC
GCCATGCGTGGCATTGGCATCATCTTGGATCTTCAGGGAGACTCCCACGA
GGAAGCCCTCCAGTGGTACATGAGATCGTACGAGAAGGGAGACAGCGAGG
CTGCTCGCCTGATTGGCCTCCTTCATGACAACGGCCGCGGAGTGGAGAAG
AGCCACGAGGAGGCAGCCAGGTGGTATTCCATTGCCGCCGAACTTGGAAA
CAGTGAGGCCTACAGGATCCTTGGCGTTCGCTACGACAACGGCCTTGGAG
TCGAGCAAGACTACGAAAAGGCCACCGAGTACTACCTCAAGGCAGGAGCA
CTCGGCGACGGCGGCGGCTACTGCTGCGCTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119429:62..544-

>mRNA_M-pyrifera_M_contig119429.4006.1 ID=mRNA_M-pyrifera_M_contig119429.4006.1|Name=mRNA_M-pyrifera_M_contig119429.4006.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig119429:62..544- (Macrocystis pyrifera P11B4 male)
GTGCGCTGGTTCCGCAAGGCCGCCAGGCAGGGTGAGGCGAGGTCTCAGTA
TCTGCTCGGGCGTCAGTACCTTCTCGGCACTGGTGTAGAGCAGAGCAATG
AGGAGGCTCTCCGCTGGTACCACCTGGCAGCTGAGAAGGGTGACCAGGAC
GCCATGCGTGGCATTGGCATCATCTTGGATCTTCAGGGAGACTCCCACGA
GGAAGCCCTCCAGTGGTACATGAGATCGTACGAGAAGGGAGACAGCGAGG
CTGCTCGCCTGATTGGCCTCCTTCATGACAACGGCCGCGGAGTGGAGAAG
AGCCACGAGGAGGCAGCCAGGTGGTATTCCATTGCCGCCGAACTTGGAAA
CAGTGAGGCCTACAGGATCCTTGGCGTTCGCTACGACAACGGCCTTGGAG
TCGAGCAAGACTACGAAAAGGCCACCGAGTACTACCTCAAGGCAGGAGCA
CTCGGCGACGGCGGCGGCTACTGCTGCGCTGGTGTGCGCTGGTTCCGCAA
GGCCGCCAGGCAGGGTGAGGCGAGGTCTCAGTATCTGCTCGGGCGTCAGT
ACCTTCTCGGCACTGGTGTAGAGCAGAGCAATGAGGAGGCTCTCCGCTGG
TACCACCTGGCAGCTGAGAAGGGTGACCAGGACGCCATGCGTGGCATTGG
CATCATCTTGGATCTTCAGGGAGACTCCCACGAGGAAGCCCTCCAGTGGT
ACATGAGATCGTACGAGAAGGGAGACAGCGAGGCTGCTCGCCTGATTGGC
CTCCTTCATGACAACGGCCGCGGAGTGGAGAAGAGCCACGAGGAGGCAGC
CAGGTGGTATTCCATTGCCGCCGAACTTGGAAACAGTGAGGCCTACAGGA
TCCTTGGCGTTCGCTACGACAACGGCCTTGGAGTCGAGCAAGACTACGAA
AAGGCCACCGAGTACTACCTCAAGGCAGGAGCACTCGGCGACGGCGGCGG
CTACTGCTGCGCTGGT
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