mRNA_M-pyrifera_M_contig119428.4005.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119428.4005.1
Unique NamemRNA_M-pyrifera_M_contig119428.4005.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A507BUD7_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUD7_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 2.780e-6
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    4 ASFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFH-LRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
            A+F +HFEVV++D SGR+N+A+++S+  L +   EA  ++ L  ++    FEA+FL+ V    L+ D L +++ P     +  LD+      +        +S L   L + LG R++ + V
Sbjct:  500 ATFEQHFEVVIVDPSGRLNLAAQVSKHGLLQLHHEAKLAIMLFNNSTEDKFEALFLRNVEEGMLKFDMLATITTPATQLPIPRLDDGTDVHSQH----DYLISRLPEVLSQALGSRLQLVTV 617          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A077WVM2_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WVM2_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 3.790e-6
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
            +F  H++VV++D +G VN+A+ +S+++L +   EA  +M  L  T    FEA+FL+ V    LR D  ++L  P P   +   D+  +       +S+    H+ + L KGL  R+  +AV
Sbjct:  446 NFTSHYQVVIVDPTGTVNMAAHMSKSSLDQLQHEAKLAMSYLNDTVD-RFEALFLRNVNEAGLRFDNFVTL--PTPSTTIPSYDDHTKSEYP--IYSEYLAQHIGSVLKKGLTNRVDLVAV 561          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A8H7SG57_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SG57_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 5.160e-6
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLL-ESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
            F +H+EVVV+D SG +N+A+ ++ + L +   EA  +M+   +STD   FEA+FL+KV     + D ++ +  PFP   +   DE  +       +   F++H+   L +GL  R+  +A+
Sbjct:  430 FLDHYEVVVVDPSGTLNLAANMTASGLSQLQHEAKLAMQYFNDSTD--QFEALFLKKVNDVKSKFDNVVRI--PFPETKIESFDESAKADYHS--YLPFFINHMSYVLNRGLTNRVDLVAI 544          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A1Y2GZR0_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZR0_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 5.180e-6
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFHL-RHDALISLSPPFPLG 237
            F  +FEVV++D SG++N+A  +S+AAL E   EA  +M+         FEA+FL++V   L R D ++ +  P  LG
Sbjct:  471 FVSNFEVVIVDPSGKINLAGHISKAALDELQHEARLAMKFFTEPSDDKFEALFLKRVDNPLLRFDNVVKIHAPKNLG 547          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A058Z3H3_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z3H3_FONAL)

HSP 1 Score: 53.5 bits (127), Expect = 9.640e-6
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFHLRHDALISLS 219
            F  HFE+V+LD+SGR+N+ SR S A + E A EA+ S+++L S+    F ++FL ++   LR+D +  L+
Sbjct:  512 FRSHFELVLLDRSGRLNILSRTSLATMLEVAHEAAISLKMLNSSVN-QFASLFLTRLDASLRYDNMFRLA 580          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A0L0HNC0_SPIPD (U3 small nucleolar RNA-associated protein 22 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNC0_SPIPD)

HSP 1 Score: 53.1 bits (126), Expect = 1.310e-5
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPF-HLRHD 201
            SF  ++EVV++D SG++N+A+ +SRA L E   EA  S+ L        F A+FL+KV   HLR+D
Sbjct:  459 SFTRNYEVVIVDPSGKINLAAAISRATLDEVQYEARRSISLFSDLRDDHFAALFLKKVDLLHLRYD 524          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A4P9W631_9FUNG (U3 small nucleolar RNA-associated protein 22 (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W631_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 3.250e-5
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVP-FHLRHDALISLSPP 225
            +F   +EVV++D +GRVN+A+ LS+AA+ E   EA  + +     D   F+A+FL+KV   HL+ D +  +  P
Sbjct:  299 AFKSAYEVVIVDPTGRVNLAAFLSKAAMDELQYEAKVTAQYFSDADADRFDALFLKKVDDVHLKFDNIARIPAP 372          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A197JH38_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JH38_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 4.510e-5
Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFH-LRHDALISLSPP 225
            +F  +F+VV++D SG++N+A  +S+AAL E   EA  +M+    +    FEA+FL++V    LR D ++ +  P
Sbjct:  368 AFVSNFDVVIVDPSGKINLAGHVSKAALDELQHEARLAMKFFTESSDDKFEALFLKRVDSPILRFDNVVKIHVP 441          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A507EI11_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EI11_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 4.530e-5
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVP-FHLRHD 201
            F   +EVV++D SG++N+AS LS++++ E   EA  S  L        FEA+FL+KV   HLR+D
Sbjct:  474 FVAAYEVVIVDPSGKINLASSLSKSSMDELQFEAKRSTELFNDVANDHFEALFLRKVNVLHLRYD 538          
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A1C7NGT2_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NGT2_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 8.390e-5
Identity = 34/120 (28.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
            F +H++VVV+D SG +N+ + ++ + L +   EA  +M     ++   F+A+FL+KV  F  ++D ++++    P   L+ L    + +         FL  L   LI+GL  R++ +AV
Sbjct:  436 FKQHYDVVVVDPSGMLNLTADMTASGLAQVQHEAKLAMSYFNDSND-QFDALFLKKVNDFRFKYDNVLTI----PSSALNGLAMSEEAKADYHSCLPYFLQRLADILIRGLTNRVKLIAV 550          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A507BUD7_9FUNG2.780e-630.33U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A077WVM2_9FUNG3.790e-631.40U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A8H7SG57_9FUNG5.160e-631.40U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A1Y2GZR0_9FUNG5.180e-638.96U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A058Z3H3_FONAL9.640e-641.43Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A0L0HNC0_SPIPD1.310e-543.94U3 small nucleolar RNA-associated protein 22 n=2 T... [more]
A0A4P9W631_9FUNG3.250e-537.84U3 small nucleolar RNA-associated protein 22 (Frag... [more]
A0A197JH38_9FUNG4.510e-536.49U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A507EI11_9FUNG4.530e-543.08U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A1C7NGT2_9FUNG8.390e-528.33U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119428contigM-pyrifera_M_contig119428:177..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog10228.TriadP32058
Preferred nameNOL6
KEGG koko:K14544
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000793,GO:0000794,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030686,GO:0031347,GO:0031348,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045184,GO:0045824,GO:0046483,GO:0046907,GO:0048519,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050776,GO:0050777,GO:0050789,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080134,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGs38FNZ@33154,3BFPE@33208,KOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.949399-CDS-M-pyrifera_M_contig119428:176..5421622815713.949399-CDS-M-pyrifera_M_contig119428:176..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119428 177..542 +
1692277534.8307772-CDS-M-pyrifera_M_contig119428:176..5421692277534.8307772-CDS-M-pyrifera_M_contig119428:176..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119428 177..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119428.4005.1prot_M-pyrifera_M_contig119428.4005.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119428 177..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119428.4005.1

>prot_M-pyrifera_M_contig119428.4005.1 ID=prot_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
LASFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGG
SFEAVFLQKVPFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQV
FLSHLRTTLIKGLGKRIRSLAV
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mRNA from alignment at M-pyrifera_M_contig119428:177..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119428.4005.1 ID=mRNA_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig119428:177..542+ (Macrocystis pyrifera P11B4 male)
CTGGCATCGTTTGCCGAGCATTTCGAGGTTGTGGTTCTGGACCAGAGCGG CCGTGTCAACGTAGCCTCGCGGCTGTCGCGTGCTGCCCTGCAGGAGGCTG CTGCCGAGGCGTCCACCAGCATGCGCCTTTTGGAGAGCACAGACGGAGGC TCCTTCGAGGCAGTCTTCCTCCAGAAGGTGCCCTTTCACCTCAGGCATGA CGCTCTCATCTCTCTTTCTCCCCCCTTCCCTCTTGGAGTGCTCTCTGAGC TGGACGAGGAGGTGCAGGAGCGCCTCCGTGACCGTTGCTGGAGCCAAGTG TTTCTCTCTCATCTTCGCACCACTCTCATCAAGGGTTTGGGCAAGAGAAT TCGCTCCCTTGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119428:177..542+

>mRNA_M-pyrifera_M_contig119428.4005.1 ID=mRNA_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig119428:177..542+ (Macrocystis pyrifera P11B4 male)
CTGGCATCGTTTGCCGAGCATTTCGAGGTTGTGGTTCTGGACCAGAGCGG
CCGTGTCAACGTAGCCTCGCGGCTGTCGCGTGCTGCCCTGCAGGAGGCTG
CTGCCGAGGCGTCCACCAGCATGCGCCTTTTGGAGAGCACAGACGGAGGC
TCCTTCGAGGCAGTCTTCCTCCAGAAGGTGCCCTTTCACCTCAGGCATGA
CGCTCTCATCTCTCTTTCTCCCCCCTTCCCTCTTGGAGTGCTCTCTGAGC
TGGACGAGGAGGTGCAGGAGCGCCTCCGTGACCGTTGCTGGAGCCAAGTG
TTTCTCTCTCATCTTCGCACCACTCTCATCAAGGGTTTGGGCAAGAGAAT
TCGCTCCCTTGCCGTCCTGGCATCGTTTGCCGAGCATTTCGAGGTTGTGG
TTCTGGACCAGAGCGGCCGTGTCAACGTAGCCTCGCGGCTGTCGCGTGCT
GCCCTGCAGGAGGCTGCTGCCGAGGCGTCCACCAGCATGCGCCTTTTGGA
GAGCACAGACGGAGGCTCCTTCGAGGCAGTCTTCCTCCAGAAGGTGCCCT
TTCACCTCAGGCATGACGCTCTCATCTCTCTTTCTCCCCCCTTCCCTCTT
GGAGTGCTCTCTGAGCTGGACGAGGAGGTGCAGGAGCGCCTCCGTGACCG
TTGCTGGAGCCAAGTGTTTCTCTCTCATCTTCGCACCACTCTCATCAAGG
GTTTGGGCAAGAGAATTCGCTCCCTTGCCGTC
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