mRNA_M-pyrifera_M_contig119193.3955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119193.3955.1
Unique NamemRNA_M-pyrifera_M_contig119193.3955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A3D5DH81_9GAMM (Adenine phosphoribosyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DH81_9GAMM)

HSP 1 Score: 216 bits (549), Expect = 2.610e-69
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGIVFKDLTPV+ +  +L R+T +L+ P+    ITAVAGMEARGFIFGALVAQ LGVGF+PLRKPGKLPS +HSV+Y+LEYG   LEMHTDAV   DRVLL+DD++ATGGTAAAS ELV ++ A+IA CAFVIELDFL GR+QL    +HSLIHF
Sbjct:   17 PGIVFKDLTPVIRDANSLRRITRKLAEPFQQSKITAVAGMEARGFIFGALVAQELGVGFVPLRKPGKLPSDTHSVAYELEYGKTMLEMHTDAVTVKDRVLLVDDVLATGGTAAASYELVGKSNAEIAGCAFVIELDFLNGRKQLPPQNVHSLIHF 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: UPI0005EBED78 (adenine phosphoribosyltransferase n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI0005EBED78)

HSP 1 Score: 213 bits (543), Expect = 2.130e-68
Identity = 101/155 (65.16%), Postives = 125/155 (80.65%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGIVFKD+TP++ +  AL     +L +P+    ITAVAGMEARGFIFG+LVA  +G+GF+PLRKPGKLP    SV+YDLEYGSA+LE+H DA+GPGDRVLL+DDL+ATGGTA ASCEL+   GA +  CAFV+ELDFL GRE+L G P+HSL+H+
Sbjct:   17 PGIVFKDITPLVKDPAALRLAVQQLMQPFVGQDITAVAGMEARGFIFGSLVAWEMGLGFVPLRKPGKLPYDVQSVAYDLEYGSAALEVHIDALGPGDRVLLVDDLLATGGTARASCELIENLGASVVGCAFVVELDFLNGRERLNGYPVHSLLHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A3M1DPS6_9GAMM (Adenine phosphoribosyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DPS6_9GAMM)

HSP 1 Score: 211 bits (536), Expect = 2.480e-67
Identity = 105/155 (67.74%), Postives = 125/155 (80.65%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PG+VFKD+TP++ +  AL     +L  P+  + ITAVAGMEARGF+FGALVA  LGVGF+PLRKPGKLP   HSVSYDLEYGS +LE HTDA+   DRVLLIDDL+ATGGTAAASCELV R GA++A CAFV+ELDFL GR++LR   IHSL+H+
Sbjct:   17 PGVVFKDITPLMRDPAALRLAVHQLLHPFLGEQITAVAGMEARGFVFGALVAWELGVGFVPLRKPGKLPYEVHSVSYDLEYGSNTLEAHTDALTGEDRVLLIDDLLATGGTAAASCELVERLGAEVAGCAFVVELDFLGGRQRLRDYRIHSLVHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A4P7C030_9GAMM (Adenine phosphoribosyltransferase n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7C030_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 7.100e-67
Identity = 105/155 (67.74%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGI+FKD+TP++ +  AL     +L  P+    ITAV GMEARGFIFGALVA  LGVGF+PLRKPGKLP    S+SY LEYGSASLE HTD++GPGD+VLL+DDL+ATGGTA ASC+LV   GA IAACAFVIELDFLKGRE+L    IHSL+H+
Sbjct:   17 PGILFKDITPLVRDPAALRLAVHQLFHPFLGQDITAVGGMEARGFIFGALVAWELGVGFVPLRKPGKLPYNVQSISYHLEYGSASLEAHTDSLGPGDKVLLVDDLLATGGTAKASCDLVESLGATIAACAFVIELDFLKGREKLSNYTIHSLLHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: UPI0019683310 (adenine phosphoribosyltransferase n=1 Tax=Methylococcus sp. EFPC2 TaxID=2812648 RepID=UPI0019683310)

HSP 1 Score: 209 bits (533), Expect = 7.100e-67
Identity = 103/155 (66.45%), Postives = 125/155 (80.65%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGI+FKD+TP++ +  AL     +L  P+    ITAVAGMEARGFIFG+LVA  LGVGF+PLRKPGKLP    SV+YDLEYGSA+LE+H DA+GPGDRVLLIDDL+ATGGTA ASCEL+   GA+I ACAFV+ELDFL GR++L   P+H+L+HF
Sbjct:   17 PGILFKDITPLVQDPAALRLAVHQLLHPFLGQNITAVAGMEARGFIFGSLVAWELGVGFVPLRKPGKLPYDVQSVAYDLEYGSAALEVHIDALGPGDRVLLIDDLLATGGTAKASCELIEGLGAEIVACAFVVELDFLAGRDKLAPRPVHALLHF 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A257SUC3_9GAMM (Adenine phosphoribosyltransferase n=3 Tax=Bacteria TaxID=2 RepID=A0A257SUC3_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 5.810e-66
Identity = 98/155 (63.23%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PG++++D+TP++ +  AL     EL  P+  D +TAV GMEARGFIFGAL A  LGVGF+PLRKPGKLP   HS+SYDLEYGS SLE+H DA+G  DRVL++DD++ATGGTAAASC L+ + GA IAACAFV+ELDFL GR +L G P+HSL+H+
Sbjct:   17 PGVIYRDITPLVRDPAALRLAVHELVHPFFGDALTAVVGMEARGFIFGALAAWELGVGFVPLRKPGKLPYDVHSISYDLEYGSESLEVHVDALGRDDRVLVVDDVLATGGTAAASCALIEKLGAKIAACAFVVELDFLSGRGKLPGYPVHSLLHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A8D4VQG6_9GAMM (Adenine phosphoribosyltransferase n=1 Tax=Methylogaea oryzae TaxID=1295382 RepID=A0A8D4VQG6_9GAMM)

HSP 1 Score: 204 bits (520), Expect = 6.960e-65
Identity = 103/155 (66.45%), Postives = 122/155 (78.71%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGIVFKD+TP++ +   L     +L  P+    ITAVAGMEARGFIFG+LVA  LGVGFIPLRKPGKLP   HSVSYDLEYGSASLE+H DA+  GD+VLLIDDL+ATGGTA ASCELV + GA +A CAFV+ELDFL GR++L    +HSL+H+
Sbjct:   17 PGIVFKDITPLVRDPATLRLAVHQLLHPFLGQDITAVAGMEARGFIFGSLVAWELGVGFIPLRKPGKLPHDVHSVSYDLEYGSASLEVHRDALQAGDKVLLIDDLLATGGTALASCELVEKLGAQVAGCAFVVELDFLAGRDKLDKYFVHSLLHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: A0A250KPR2_9GAMM (Adenine phosphoribosyltransferase n=2 Tax=Methylocaldum TaxID=73778 RepID=A0A250KPR2_9GAMM)

HSP 1 Score: 204 bits (518), Expect = 1.360e-64
Identity = 100/155 (64.52%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGI+FKD+TP++ N + L      L  PY +  +TAVAGMEARGFIFG+LVA  LGVGFIPLRKPGKLP    +++YDLEYGSA+LE+H DA+G GD+VLL+DDL+ATGGTA ASCELV   GA+I ACAFV+ELD LKGRE+L    +HSL+H+
Sbjct:   17 PGILFKDITPLVKNPVTLRLAVHHLLHPYLDREVTAVAGMEARGFIFGSLVAWELGVGFIPLRKPGKLPYDVQTINYDLEYGSAALEVHIDALGSGDKVLLVDDLLATGGTAKASCELVEALGAEIVACAFVVELDELKGREKLERYSVHSLLHY 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: UPI0004769DDF (adenine phosphoribosyltransferase n=1 Tax=Methylosarcina fibrata TaxID=105972 RepID=UPI0004769DDF)

HSP 1 Score: 204 bits (518), Expect = 1.360e-64
Identity = 103/155 (66.45%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PGI+FKD+TP++ +   L     +L +P+    ITAVAGMEARGFIFG+LVA  LG+ FIPLRKPGKLP    SVSYDLEYGSASLE H DA   GDRVLLIDDL+ATGGTA ASCEL+ + GA +AACAFV+ELDFL+GR +L G  IHSL+HF
Sbjct:   17 PGIMFKDITPLVKDPATLKLAVHQLMQPFLGSSITAVAGMEARGFIFGSLVAWELGLPFIPLRKPGKLPYDVQSVSYDLEYGSASLEAHIDAFEDGDRVLLIDDLLATGGTARASCELIEKLGAKVAACAFVVELDFLQGRSRLEGYEIHSLLHF 171          
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Match: APT_NITOC (Adenine phosphoribosyltransferase n=5 Tax=Nitrosococcus TaxID=1227 RepID=APT_NITOC)

HSP 1 Score: 202 bits (513), Expect = 7.830e-64
Identity = 100/155 (64.52%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    1 PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGALVAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVLLIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIHSLIHF 465
            PG++FKD+TP++ +   L     +L  P+    ITAV G+EARGFIFGALVA  LGVGFIPLRK GKLP    S+SY LEYGSASLE HTD++GPGD VLL+DDL+ATGGTA ASCELV   GA +AACAFVIELDFL GRE+L    +HSL+H+
Sbjct:   17 PGVLFKDITPLVGDPATLRLAVHQLLHPFLEQDITAVGGIEARGFIFGALVAWELGVGFIPLRKSGKLPYEVRSISYQLEYGSASLEAHTDSLGPGDNVLLVDDLLATGGTAKASCELVESLGATVAACAFVIELDFLHGRERLSDYTVHSLVHY 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119193.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DH81_9GAMM2.610e-6970.32Adenine phosphoribosyltransferase n=1 Tax=Gammapro... [more]
UPI0005EBED782.130e-6865.16adenine phosphoribosyltransferase n=1 Tax=Methylot... [more]
A0A3M1DPS6_9GAMM2.480e-6767.74Adenine phosphoribosyltransferase n=1 Tax=Gammapro... [more]
A0A4P7C030_9GAMM7.100e-6767.74Adenine phosphoribosyltransferase n=1 Tax=Nitrosoc... [more]
UPI00196833107.100e-6766.45adenine phosphoribosyltransferase n=1 Tax=Methyloc... [more]
A0A257SUC3_9GAMM5.810e-6663.23Adenine phosphoribosyltransferase n=3 Tax=Bacteria... [more]
A0A8D4VQG6_9GAMM6.960e-6566.45Adenine phosphoribosyltransferase n=1 Tax=Methylog... [more]
A0A250KPR2_9GAMM1.360e-6464.52Adenine phosphoribosyltransferase n=2 Tax=Methyloc... [more]
UPI0004769DDF1.360e-6466.45adenine phosphoribosyltransferase n=1 Tax=Methylos... [more]
APT_NITOC7.830e-6464.52Adenine phosphoribosyltransferase n=5 Tax=Nitrosoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119193contigM-pyrifera_M_contig119193:77..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score211.8
Seed ortholog evalue2.2e-52
Seed eggNOG ortholog472759.Nhal_2625
Preferred nameapt
KEGG rclassRC00063
KEGG koko:K00759
KEGG ReactionR00190,R01229,R04378
KEGG Pathwayko00230,ko01100,map00230,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
EggNOG OGs1MVZ6@1224,1S2N9@1236,1WYJS@135613,COG0503@1,COG0503@2
EC2.4.2.7
COG Functional cat.F
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.3903208-CDS-M-pyrifera_M_contig119193:76..5441622815711.3903208-CDS-M-pyrifera_M_contig119193:76..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119193 77..544 -
1692277533.6719403-CDS-M-pyrifera_M_contig119193:76..5441692277533.6719403-CDS-M-pyrifera_M_contig119193:76..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119193 77..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119193.3955.1prot_M-pyrifera_M_contig119193.3955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119193 77..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119193.3955.1

>prot_M-pyrifera_M_contig119193.3955.1 ID=prot_M-pyrifera_M_contig119193.3955.1|Name=mRNA_M-pyrifera_M_contig119193.3955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
PGIVFKDLTPVLANGIALARVTAELSRPYDNDGITAVAGMEARGFIFGAL
VAQALGVGFIPLRKPGKLPSASHSVSYDLEYGSASLEMHTDAVGPGDRVL
LIDDLIATGGTAAASCELVRRAGADIAACAFVIELDFLKGREQLRGIPIH
SLIHF*
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mRNA from alignment at M-pyrifera_M_contig119193:77..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119193.3955.1 ID=mRNA_M-pyrifera_M_contig119193.3955.1|Name=mRNA_M-pyrifera_M_contig119193.3955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig119193:77..544- (Macrocystis pyrifera P11B4 male)
CCCGGAATCGTATTCAAGGATTTAACGCCGGTTCTCGCGAACGGGATCGC GCTCGCCCGGGTCACCGCCGAACTCTCGCGTCCGTACGATAACGACGGCA TTACGGCAGTCGCGGGCATGGAAGCGCGCGGTTTTATTTTCGGTGCGCTC GTGGCGCAGGCGCTTGGCGTCGGCTTCATTCCGCTGCGCAAACCCGGCAA ATTGCCGTCCGCTTCGCACAGCGTGTCGTACGATCTCGAATACGGCTCCG CGAGCCTCGAAATGCACACCGACGCGGTCGGGCCCGGTGACCGCGTATTG CTCATCGATGATTTGATCGCGACCGGCGGCACGGCCGCGGCAAGCTGTGA ACTCGTGCGCCGCGCCGGTGCGGATATCGCTGCCTGCGCTTTCGTCATCG AACTCGATTTCCTTAAGGGTCGCGAGCAACTGCGCGGCATACCGATCCAT TCACTCATCCATTTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119193:77..544-

>mRNA_M-pyrifera_M_contig119193.3955.1 ID=mRNA_M-pyrifera_M_contig119193.3955.1|Name=mRNA_M-pyrifera_M_contig119193.3955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig119193:77..544- (Macrocystis pyrifera P11B4 male)
CCCGGAATCGTATTCAAGGATTTAACGCCGGTTCTCGCGAACGGGATCGC
GCTCGCCCGGGTCACCGCCGAACTCTCGCGTCCGTACGATAACGACGGCA
TTACGGCAGTCGCGGGCATGGAAGCGCGCGGTTTTATTTTCGGTGCGCTC
GTGGCGCAGGCGCTTGGCGTCGGCTTCATTCCGCTGCGCAAACCCGGCAA
ATTGCCGTCCGCTTCGCACAGCGTGTCGTACGATCTCGAATACGGCTCCG
CGAGCCTCGAAATGCACACCGACGCGGTCGGGCCCGGTGACCGCGTATTG
CTCATCGATGATTTGATCGCGACCGGCGGCACGGCCGCGGCAAGCTGTGA
ACTCGTGCGCCGCGCCGGTGCGGATATCGCTGCCTGCGCTTTCGTCATCG
AACTCGATTTCCTTAAGGGTCGCGAGCAACTGCGCGGCATACCGATCCAT
TCACTCATCCATTTTTAACCCGGAATCGTATTCAAGGATTTAACGCCGGT
TCTCGCGAACGGGATCGCGCTCGCCCGGGTCACCGCCGAACTCTCGCGTC
CGTACGATAACGACGGCATTACGGCAGTCGCGGGCATGGAAGCGCGCGGT
TTTATTTTCGGTGCGCTCGTGGCGCAGGCGCTTGGCGTCGGCTTCATTCC
GCTGCGCAAACCCGGCAAATTGCCGTCCGCTTCGCACAGCGTGTCGTACG
ATCTCGAATACGGCTCCGCGAGCCTCGAAATGCACACCGACGCGGTCGGG
CCCGGTGACCGCGTATTGCTCATCGATGATTTGATCGCGACCGGCGGCAC
GGCCGCGGCAAGCTGTGAACTCGTGCGCCGCGCCGGTGCGGATATCGCTG
CCTGCGCTTTCGTCATCGAACTCGATTTCCTTAAGGGTCGCGAGCAACTG
CGCGGCATACCGATCCATTCACTCATCCATTTTTAA
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