mRNA_M-pyrifera_M_contig119093.3919.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119093.3919.1
Unique NamemRNA_M-pyrifera_M_contig119093.3919.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A7S4KWC4_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KWC4_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 2.060e-35
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RTI++RRDYL Y+ KYNRYEKRH N++AH+SPAF GV  GD+ T+GQCRPLSKTVRFNVL  E Q ++G+QKKK FRIF
Sbjct:   88 RTIVVRRDYLHYIPKYNRYEKRHKNVSAHLSPAFTGVSNGDIVTIGQCRPLSKTVRFNVLKVEKQEVEGIQKKKLFRIF 166
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BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: L8HL46_ACACA (Ribosomal protein S17, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HL46_ACACA)

HSP 1 Score: 125 bits (314), Expect = 5.100e-35
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RTII+RRDYL YV KYNR+EKRH NI AH SPAF  +K GDV TVGQCRPLSKT+RFNV++ +PQNIQGLQKKK FRIF
Sbjct:   84 RTIIVRRDYLHYVPKYNRFEKRHKNIPAHCSPAFT-LKEGDVVTVGQCRPLSKTIRFNVIAHQPQNIQGLQKKKTFRIF 161
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BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.230e-32
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RTI++RRDYL +V KY RYEKRH N+ AH SP FV VKPGDV T+GQCRPL+KT+RFNVL+ EP   Q +  KKQFR+F
Sbjct:   88 RTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A4D9CZU0_9STRA (Ribosomal_S17_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZU0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.910e-32
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 NRTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            NRT+IIRRDYL +V+KY+R+EKRH N+AAH SPAF  VK GD+ TVGQCRPLSKTVRFNVL  EP   Q L  KKQFR+F
Sbjct:   97 NRTVIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A6U1SVE4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1SVE4_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 1.080e-31
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 NRTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            N+TII+R++YL ++ KYNRYEKRH NI AH+SP F  VK GD+ T+GQCRPLSKTVRFNVLS + Q+ +GLQKKKQFRIF
Sbjct:   82 NKTIIVRKNYLHFLPKYNRYEKRHTNIPAHISPCF-RVKVGDIVTIGQCRPLSKTVRFNVLSVQSQDTEGLQKKKQFRIF 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A7S1UA06_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA06_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.030e-31
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RTI++RRDYL +V KY RYEKRH N+ AH SP FV VKPGDV T+GQCRPL+KT+RFNVL+ EP   Q +  KKQFR+F
Sbjct:  191 RTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 269
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.260e-30
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RT+++RRDYL +V KY RYEKRH N+  H SPAF  VKPGDV TVGQCRPLSKT+RFNVL  EP   Q +  KKQFR+F
Sbjct:  108 RTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVNQSVSVKKQFRVF 186
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BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A397UDZ1_9GLOM (Ribosomal protein S17-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UDZ1_9GLOM)

HSP 1 Score: 113 bits (282), Expect = 3.080e-30
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RTII+RR+YL YVTKYNRYEKRH N+AAH+SPAFVGV PGD+ TVGQCRPLSKTVRFNVL  + +  +G    KQF  F
Sbjct:   80 RTIIVRREYLHYVTKYNRYEKRHKNLAAHLSPAFVGVSPGDIVTVGQCRPLSKTVRFNVLKVQKRIQKG---PKQFAKF 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A1Y2HJB2_9FUNG (Ribosomal protein S17 n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HJB2_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 3.810e-30
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    4 RTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            RT+I+RR+YL YV KYNRYEKRH N+AAH+SPAFVGV+ GDVATVGQCRPLSKTVRFNVL  +    + +   KQF+ F
Sbjct:    3 RTVILRREYLHYVKKYNRYEKRHRNLAAHLSPAFVGVENGDVATVGQCRPLSKTVRFNVLKIQ----KAIAGSKQFKKF 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Match: A0A4P9Y4G5_9FUNG (Ribosomal protein S17-domain-containing protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y4G5_9FUNG)

HSP 1 Score: 112 bits (280), Expect = 6.370e-30
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 NRTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCRPLSKTVRFNVLSFEPQNIQGLQKKKQFRIF 240
            NRTIIIRRDYL ++ KY+RYEKRH N+AAH+SPAF+GV PGD  TVGQCRPLSKTVRFNVL    + ++G    KQF  F
Sbjct:   80 NRTIIIRRDYLHFIPKYSRYEKRHKNLAAHLSPAFIGVAPGDTVTVGQCRPLSKTVRFNVLKVSKKTVKG---SKQFAKF 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119093.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KWC4_9EUKA2.060e-3570.89Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
L8HL46_ACACA5.100e-3577.22Ribosomal protein S17, putative n=1 Tax=Acanthamoe... [more]
A0A7S1XVW4_9STRA2.230e-3267.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CZU0_9STRA5.910e-3271.25Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A6U1SVE4_9EUKA1.080e-3170.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S1UA06_9STRA3.030e-3167.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U3I9_9STRA1.260e-3067.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A397UDZ1_9GLOM3.080e-3070.89Ribosomal protein S17-domain-containing protein n=... [more]
A0A1Y2HJB2_9FUNG3.810e-3068.35Ribosomal protein S17 n=1 Tax=Catenaria anguillula... [more]
A0A4P9Y4G5_9FUNG6.370e-3067.50Ribosomal protein S17-domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119093contigM-pyrifera_M_contig119093:1..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue8.1e-22
Seed eggNOG ortholog2850.Phatr28562
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Ribosomal_S17 N-terminal
EggNOG OGs2XE74@2836,COG0186@1,KOG1728@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.6777327-CDS-M-pyrifera_M_contig119093:0..1491622815709.6777327-CDS-M-pyrifera_M_contig119093:0..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119093 1..149 +
1692277532.920736-CDS-M-pyrifera_M_contig119093:0..1491692277532.920736-CDS-M-pyrifera_M_contig119093:0..149Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119093 1..149 +
1622815709.6891873-CDS-M-pyrifera_M_contig119093:242..3361622815709.6891873-CDS-M-pyrifera_M_contig119093:242..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119093 243..336 +
1692277532.9350984-CDS-M-pyrifera_M_contig119093:242..3361692277532.9350984-CDS-M-pyrifera_M_contig119093:242..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119093 243..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119093.3919.1prot_M-pyrifera_M_contig119093.3919.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119093 1..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119093.3919.1

>prot_M-pyrifera_M_contig119093.3919.1 ID=prot_M-pyrifera_M_contig119093.3919.1|Name=mRNA_M-pyrifera_M_contig119093.3919.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
NRTIIIRRDYLRYVTKYNRYEKRHHNIAAHMSPAFVGVKPGDVATVGQCR
PLSKTVRFNVLSFEPQNIQGLQKKKQFRIF*
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mRNA from alignment at M-pyrifera_M_contig119093:1..336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119093.3919.1 ID=mRNA_M-pyrifera_M_contig119093.3919.1|Name=mRNA_M-pyrifera_M_contig119093.3919.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig119093:1..336+ (Macrocystis pyrifera P11B4 male)
AACAGGACCATCATCATCCGTCGTGATTACCTCCGCTACGTGACCAAGTA
CAACCGTTACGAGAAGAGGCACCACAACATCGCCGCCCACATGTCGCCCG
CTTTCGTTGGCGTCAAGCCCGGTGATGTCGCCACCGTCGGACAGTGCCGG
TACGCAGTCTCCCTCACCCTTGTCTTCCCCTTTGCCCAGCGGTCTTCCCC
TTTGCCCAGCGCTCCTCTGAGTATCCACTGACCCTTGGCCAGCCCTCTGT
CCAAGACCGTGCGCTTCAACGTGCTGAGCTTCGAGCCCCAGAACATCCAG
GGTCTGCAGAAGAAGAAGCAGTTCCGCATCTTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119093:1..336+

>mRNA_M-pyrifera_M_contig119093.3919.1 ID=mRNA_M-pyrifera_M_contig119093.3919.1|Name=mRNA_M-pyrifera_M_contig119093.3919.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig119093:1..336+ (Macrocystis pyrifera P11B4 male)
AACAGGACCATCATCATCCGTCGTGATTACCTCCGCTACGTGACCAAGTA
CAACCGTTACGAGAAGAGGCACCACAACATCGCCGCCCACATGTCGCCCG
CTTTCGTTGGCGTCAAGCCCGGTGATGTCGCCACCGTCGGACAGTGCCGA
ACAGGACCATCATCATCCGTCGTGATTACCTCCGCTACGTGACCAAGTAC
AACCGTTACGAGAAGAGGCACCACAACATCGCCGCCCACATGTCGCCCGC
TTTCGTTGGCGTCAAGCCCGGTGATGTCGCCACCGTCGGACAGTGCCGCC
CTCTGTCCAAGACCGTGCGCTTCAACGTGCTGAGCTTCGAGCCCCAGAAC
ATCCAGGGTCTGCAGAAGAAGAAGCAGTTCCGCATCTTCTAACCCTCTGT
CCAAGACCGTGCGCTTCAACGTGCTGAGCTTCGAGCCCCAGAACATCCAG
GGTCTGCAGAAGAAGAAGCAGTTCCGCATCTTCTAA
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