mRNA_M-pyrifera_M_contig119083.3915.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119083.3915.1
Unique NamemRNA_M-pyrifera_M_contig119083.3915.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A0F7SN91_PHARH (RNA polymerase II subunit A C-terminal domain phosphatase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SN91_PHARH)

HSP 1 Score: 80.1 bits (196), Expect = 3.530e-15
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    7 PDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAK------SNGIHVVHVAWLFASAARFTKLSELGFARLEPA 333
            PD + +L   +  VLRGCRIVFSGV PLG  PE  + WR+A   GA C K    GS   TH +A   GT+KV  A       ++ IH+V   WL  S A++T L E  +  + P+
Sbjct:  523 PDVKPILDYIKRRVLRGCRIVFSGVIPLGTKPELFSLWRLAVQHGAVCEKNLSTGS---THLIARASGTQKVHEASRMDGGGTSRIHIVTPYWLIDSIAQWTHLPEWMYLLIPPS 634          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A804K136_MUSAM (RNA polymerase II C-terminal domain phosphatase-like n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K136_MUSAM)

HSP 1 Score: 76.6 bits (187), Expect = 5.550e-14
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
            D R LL  ++  VLRGCRIVFS VFP+G   P+Q   W+ A+  GA C  Q +   V  TH +A   GT+KV  A S G  VVH  W+ AS   + + +E  FA
Sbjct:  458 DVRSLLEAEQRKVLRGCRIVFSRVFPVGEANPQQHPLWKKAQQFGAVCTDQ-IDEHV--THVIATALGTDKVQRALSTGKFVVHPGWIEASTLLYRRANEHNFA 558          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A328DHA7_9ASTE (RNA polymerase II C-terminal domain phosphatase-like n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DHA7_9ASTE)

HSP 1 Score: 74.3 bits (181), Expect = 3.480e-13
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLEP 330
            D R +L   R  VL+GC+IVFS VFP  +  E+   WRIA  LGA C  + V  SV  TH V++  GTEK  +A+ N   +VH  W+ A+  RF +  E  F  + P
Sbjct:  379 DVREVLKGVRKEVLKGCKIVFSRVFPNNIQAEKHHLWRIAEQLGATCSIE-VDESV--THVVSMDAGTEKSRWARQNKKFLVHPKWIEAANYRFERKPEKDFPVVVP 482          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: W1P8K8_AMBTC (Protein-serine/threonine phosphatase n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1P8K8_AMBTC)

HSP 1 Score: 74.3 bits (181), Expect = 3.770e-13
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLEP 330
            D R +L+ ++  +L+GC++VFS VF +G+  P     W+ A   GA C  Q +   V  TH VA+  GT+KV +A S G +VVH  WL ASA  + + +E  F+ + P
Sbjct:  905 DVRDILASEQQKILKGCKVVFSRVFHVGLANPHLHPLWQTAEQFGAICTNQ-IDDEV--THVVAISLGTDKVNWAISTGRYVVHPGWLEASALLYRRANERDFSIMPP 1009          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: W1PT59_AMBTC (RNA polymerase II C-terminal domain phosphatase-like n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PT59_AMBTC)

HSP 1 Score: 73.9 bits (180), Expect = 4.090e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFP-----LGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLE 327
            D R LL+ ++  +LRGC+++FSG+F      L + P     W+ A   GA C  Q +   V  TH VA   GT KV +A SNG  VVH  WL AS+  + +++EL FAR++
Sbjct:  281 DIRDLLASQQQKILRGCKVLFSGIFQADDMNLNLHPF----WKTAEQFGAICTNQ-IDDQV--THVVARLPGTTKVNWALSNGKFVVHPGWLKASSFLYRRVNELDFARID 384          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 n=4 Tax=Arabidopsis thaliana TaxID=3702 RepID=CPL4_ARATH)

HSP 1 Score: 73.6 bits (179), Expect = 6.230e-13
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGF 315
            D R++L + R  +L+GC+IVFS VFP    PE    W++A  LGA C  + V  SV  TH VA+  GTEK  +A     +VVH  W+ A+   + K  E  F
Sbjct:  329 DVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATE-VDASV--THVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 427          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: UPI0009016285 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI0009016285)

HSP 1 Score: 73.6 bits (179), Expect = 6.580e-13
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
            S  D R++L + R  +L+GC++VFS VFP    PE    W++A  LGA C  + V  SV  TH VA+  GTEK  +A      VVH  W+ A+   + K  E  F+
Sbjct:  401 SNKDVRLMLKQVRKEILKGCKVVFSRVFPTKAKPEDHPLWKMAEDLGATCATE-VDASV--THVVAMEMGTEKARWAVREKKFVVHRGWIDAANYLWKKQPEENFS 503          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: G7JJ51_MEDTR (Protein-serine/threonine phosphatase n=3 Tax=Medicago truncatula TaxID=3880 RepID=G7JJ51_MEDTR)

HSP 1 Score: 73.6 bits (179), Expect = 7.040e-13
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
            D R +L+ ++  +L GCRIVFSGVFP+G   P     WR A   GA+C  + V   V  TH VA   GT+KV +  SNG  VV+  W+ AS   + +++E  FA
Sbjct:  962 DVRNILASEQRKILGGCRIVFSGVFPVGETNPHLHPLWRTAEQFGASCTNK-VDPQV--THVVAQSPGTDKVNWGISNGKFVVYPNWVEASTLLYRRMNEQDFA 1062          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A7G2FGZ8_ARATH (Reticulon-like protein n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2FGZ8_ARATH)

HSP 1 Score: 73.6 bits (179), Expect = 7.050e-13
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGF 315
            D R++L + R  +L+GC+IVFS VFP    PE    W++A  LGA C  + V  SV  TH VA+  GTEK  +A     +VVH  W+ A+   + K  E  F
Sbjct:  884 DVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATE-VDASV--THVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 982          
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A8B7XND0_ACAPL (RNA polymerase II subunit A C-terminal domain phosphatase n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XND0_ACAPL)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-12
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAAC-------LKQPVQGSVLATHCVALREGTEKVMFA-KSNGIHVVHVAWLFASAARFTKLSE 306
            SIPD +++L   +  VL G  +VFSGVFP  + PEQS  W++A +LGA         +K     +   TH VA + GT KV  A ++  IH+V   WL+    R+ ++ E
Sbjct:  464 SIPDLKIILPALKQKVLAGVNLVFSGVFPTNMNPEQSKAWKVASALGARISPGIICGVKGSASPANATTHLVAAKAGTSKVHTAQRAKSIHIVTPEWLWCCWERWQRVDE 573          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F7SN91_PHARH3.530e-1541.74RNA polymerase II subunit A C-terminal domain phos... [more]
A0A804K136_MUSAM5.550e-1444.23RNA polymerase II C-terminal domain phosphatase-li... [more]
A0A328DHA7_9ASTE3.480e-1342.06RNA polymerase II C-terminal domain phosphatase-li... [more]
W1P8K8_AMBTC3.770e-1338.89Protein-serine/threonine phosphatase n=3 Tax=Ambor... [more]
W1PT59_AMBTC4.090e-1340.54RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL4_ARATH6.230e-1341.18RNA polymerase II C-terminal domain phosphatase-li... [more]
UPI00090162856.580e-1339.62RNA polymerase II C-terminal domain phosphatase-li... [more]
G7JJ51_MEDTR7.040e-1342.31Protein-serine/threonine phosphatase n=3 Tax=Medic... [more]
A0A7G2FGZ8_ARATH7.050e-1341.18Reticulon-like protein n=3 Tax=Arabidopsis thalian... [more]
A0A8B7XND0_ACAPL1.280e-1237.27RNA polymerase II subunit A C-terminal domain phos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119083contigM-pyrifera_M_contig119083:193..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue9.6e-13
Seed eggNOG ortholog296587.XP_002508178.1
KEGG koko:K18999
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008022,GO:0008150,GO:0008152,GO:0008420,GO:0009628,GO:0009651,GO:0009787,GO:0009788,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016311,GO:0016591,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1902494,GO:1903506,GO:1905957,GO:1905958,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGs37HKK@33090,COG5190@1,KOG0323@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.522821-CDS-M-pyrifera_M_contig119083:192..5341622815709.522821-CDS-M-pyrifera_M_contig119083:192..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119083 193..534 -
1692277532.868571-CDS-M-pyrifera_M_contig119083:192..5341692277532.868571-CDS-M-pyrifera_M_contig119083:192..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119083 193..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119083.3915.1prot_M-pyrifera_M_contig119083.3915.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119083 193..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119083.3915.1

>prot_M-pyrifera_M_contig119083.3915.1 ID=prot_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAAC
LKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKL
SELGFARLEPAQL*
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mRNA from alignment at M-pyrifera_M_contig119083:193..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119083.3915.1 ID=mRNA_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig119083:193..534- (Macrocystis pyrifera P11B4 male)
AGCATCCCCGACTGCCGCGTCCTGCTGTCGCGCAAGCGCTACGCCGTGCT ACGAGGCTGCCGAATCGTCTTCTCTGGGGTGTTTCCGCTGGGAGTGGTGC CAGAGCAGAGTACCGAGTGGCGAATCGCACGGTCCCTCGGTGCGGCTTGC TTGAAGCAGCCGGTACAGGGATCGGTGCTTGCCACGCACTGCGTTGCACT GCGCGAGGGGACGGAAAAGGTGATGTTTGCGAAGAGCAACGGAATTCACG TCGTGCATGTGGCCTGGCTGTTCGCTAGCGCCGCCAGGTTCACCAAGCTC TCAGAGCTAGGATTCGCTAGGCTTGAGCCTGCACAGCTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119083:193..534-

>mRNA_M-pyrifera_M_contig119083.3915.1 ID=mRNA_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig119083:193..534- (Macrocystis pyrifera P11B4 male)
AGCATCCCCGACTGCCGCGTCCTGCTGTCGCGCAAGCGCTACGCCGTGCT
ACGAGGCTGCCGAATCGTCTTCTCTGGGGTGTTTCCGCTGGGAGTGGTGC
CAGAGCAGAGTACCGAGTGGCGAATCGCACGGTCCCTCGGTGCGGCTTGC
TTGAAGCAGCCGGTACAGGGATCGGTGCTTGCCACGCACTGCGTTGCACT
GCGCGAGGGGACGGAAAAGGTGATGTTTGCGAAGAGCAACGGAATTCACG
TCGTGCATGTGGCCTGGCTGTTCGCTAGCGCCGCCAGGTTCACCAAGCTC
TCAGAGCTAGGATTCGCTAGGCTTGAGCCTGCACAGCTATGAAGCATCCC
CGACTGCCGCGTCCTGCTGTCGCGCAAGCGCTACGCCGTGCTACGAGGCT
GCCGAATCGTCTTCTCTGGGGTGTTTCCGCTGGGAGTGGTGCCAGAGCAG
AGTACCGAGTGGCGAATCGCACGGTCCCTCGGTGCGGCTTGCTTGAAGCA
GCCGGTACAGGGATCGGTGCTTGCCACGCACTGCGTTGCACTGCGCGAGG
GGACGGAAAAGGTGATGTTTGCGAAGAGCAACGGAATTCACGTCGTGCAT
GTGGCCTGGCTGTTCGCTAGCGCCGCCAGGTTCACCAAGCTCTCAGAGCT
AGGATTCGCTAGGCTTGAGCCTGCACAGCTATGA
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