mRNA_M-pyrifera_M_contig118890.3878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118890.3878.1
Unique NamemRNA_M-pyrifera_M_contig118890.3878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: F0WHJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHJ6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.910e-11
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGEL 195
            VT+ F A+G+APIL +      A+ T+  V +FLR++L+++  DA+++ C RAF PAP QS+ +L
Sbjct:    7 VTLHFVAVGNAPILQKTKFTIDANDTLSVVYDFLRKQLKLKLSDALFIYCNRAFAPAPDQSLLDL 71
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A8J2SMP5_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMP5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.280e-9
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELYA 201
            V + F+A+GSAP+L +P +  +  +    VQ FL ++L++   + ++L C+ AF P PT+ +G LYA
Sbjct:   22 VKLHFKAVGSAPLLRKPKLTVNGTEPFHAVQTFLAKQLQLPQTERLFLYCDSAFSPVPTEPVGHLYA 88
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: W9W7B2_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Cladophialophora yegresii CBS 114405 TaxID=1182544 RepID=W9W7B2_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 1.710e-7
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+A+GSAPIL +   K SA      V  FLR+K+ V  GD ++      F P   + +G LY
Sbjct:   29 VSVRFQAIGSAPILKQKVFKISASSRFSVVLNFLRKKVGVREGDGLFCYVNSVFAPGLDEGVGNLY 94
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A0D2E100_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Exophiala xenobiotica TaxID=348802 RepID=A0A0D2E100_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 3.380e-7
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V+IRF+ +GSAPIL +   K SA   +  V  FLR+KL V+ GD ++L     F P   + +G L+
Sbjct:   88 VSIRFQPVGSAPILKQRVFKISASSKLSVVLNFLRKKLGVKEGDGLFLYVNSVFAPGLDEGVGNLF 153
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: W9YQI3_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Capronia coronata CBS 617.96 TaxID=1182541 RepID=W9YQI3_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 3.520e-7
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+A+GSAPIL +   K +A      V  FLR+KL ++ GD ++L     F P   + +G L+
Sbjct:   68 VSVRFQAIGSAPILKQRVFKINASSRFSVVLNFLRKKLGIKEGDGLFLYVNSVFAPGLDEGVGNLF 133
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BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A1C1CXL5_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Cladophialophora carrionii TaxID=86049 RepID=A0A1C1CXL5_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 5.260e-7
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+A+GSAPIL +   K SA      V  FLR+K+ V  GD ++      F P   + +G LY
Sbjct:   96 VSVRFQAIGSAPILKQKVFKISASSRFSVVLNFLRKKVGVREGDGLFCYVNSVFAPGLDEGVGNLY 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A0D2G4W1_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Phialophora americana TaxID=5601 RepID=A0A0D2G4W1_9EURO)

HSP 1 Score: 53.1 bits (126), Expect = 7.170e-7
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+A+GSAPIL +   K SA      V  FLR+K+ V  GD ++      F P   + +G LY
Sbjct:   94 VSVRFQAIGSAPILKQRVFKISASSRFSVVLNFLRKKVGVREGDGLFCYVNSVFAPGLDEGVGNLY 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: V9DLJ8_9EURO (Ubiquitin-like protein ATG12 n=1 Tax=Cladophialophora carrionii CBS 160.54 TaxID=1279043 RepID=V9DLJ8_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 7.270e-7
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+A+GSAPIL +   K SA      V  FLR+K+ V  GD ++      F P   + +G LY
Sbjct:   95 VSVRFQAIGSAPILKQKVFKISASSRFSVVLNFLRKKVGVREGDGLFCYVNSVFAPGLDEGVGNLY 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A165FL60_XYLHT (Ubiquitin-like protein ATG12 n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A165FL60_XYLHT)

HSP 1 Score: 53.1 bits (126), Expect = 9.110e-7
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            VT+RF+A+GSAPIL +      A      V  FLR++ E++  D+V+L     F P+  + +G LY
Sbjct:  115 VTVRFQAVGSAPILRKKVYTIKAKSPFAAVVNFLRKRPEIKGNDSVFLYVNSVFAPSLDEEVGNLY 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Match: A0A0D1ZYS0_EXOME (Ubiquitin-like protein ATG12 n=2 Tax=Exophiala mesophila TaxID=212818 RepID=A0A0D1ZYS0_EXOME)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-6
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    1 VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVCERAFVPAPTQSMGELY 198
            V++RF+ +GSAPIL +   K SA      V  FLR+K+  + GD ++L     F P   + +G LY
Sbjct:   78 VSVRFQPIGSAPILKQKVFKISASSRFSVVLNFLRKKVGTKDGDGLFLYVNNVFAPGLDEGVGNLY 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118890.3878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0WHJ6_9STRA4.910e-1143.08Ubiquitin-like protein ATG12 n=1 Tax=Albugo laibac... [more]
A0A8J2SMP5_9STRA2.280e-937.31Ubiquitin-like protein ATG12 n=1 Tax=Pelagomonas c... [more]
W9W7B2_9EURO1.710e-739.39Ubiquitin-like protein ATG12 n=1 Tax=Cladophialoph... [more]
A0A0D2E100_9EURO3.380e-740.91Ubiquitin-like protein ATG12 n=1 Tax=Exophiala xen... [more]
W9YQI3_9EURO3.520e-737.88Ubiquitin-like protein ATG12 n=1 Tax=Capronia coro... [more]
A0A1C1CXL5_9EURO5.260e-739.39Ubiquitin-like protein ATG12 n=1 Tax=Cladophialoph... [more]
A0A0D2G4W1_9EURO7.170e-739.39Ubiquitin-like protein ATG12 n=1 Tax=Phialophora a... [more]
V9DLJ8_9EURO7.270e-739.39Ubiquitin-like protein ATG12 n=1 Tax=Cladophialoph... [more]
A0A165FL60_XYLHT9.110e-737.88Ubiquitin-like protein ATG12 n=1 Tax=Xylona heveae... [more]
A0A0D1ZYS0_EXOME1.130e-637.88Ubiquitin-like protein ATG12 n=2 Tax=Exophiala mes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118890contigM-pyrifera_M_contig118890:17..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog653948.CCA20715
Preferred nameATG12
KEGG koko:K08336
KEGG Pathwayko04068,ko04136,ko04138,ko04140,ko04621,ko04622,map04068,map04136,map04138,map04140,map04621,map04622
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0002165,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007568,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009653,GO:0009791,GO:0009886,GO:0009987,GO:0009991,GO:0010259,GO:0010623,GO:0012501,GO:0012506,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0022411,GO:0022607,GO:0030139,GO:0030154,GO:0030234,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031386,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0035069,GO:0035096,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044042,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045335,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051179,GO:0051641,GO:0051716,GO:0055114,GO:0060033,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.autophagosome assembly
EggNOG OGsKOG3439@1,KOG3439@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.5659459-CDS-M-pyrifera_M_contig118890:16..791622815707.5659459-CDS-M-pyrifera_M_contig118890:16..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118890 17..79 -
1692277531.7997544-CDS-M-pyrifera_M_contig118890:16..791692277531.7997544-CDS-M-pyrifera_M_contig118890:16..79Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118890 17..79 -
1622815707.578203-CDS-M-pyrifera_M_contig118890:142..2801622815707.578203-CDS-M-pyrifera_M_contig118890:142..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118890 143..280 -
1692277531.8110933-CDS-M-pyrifera_M_contig118890:142..2801692277531.8110933-CDS-M-pyrifera_M_contig118890:142..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118890 143..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118890.3878.1prot_M-pyrifera_M_contig118890.3878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118890 17..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118890.3878.1

>prot_M-pyrifera_M_contig118890.3878.1 ID=prot_M-pyrifera_M_contig118890.3878.1|Name=mRNA_M-pyrifera_M_contig118890.3878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
VTIRFEALGSAPILARPSIKCSADKTVLEVQEFLRRKLEVEAGDAVYLVC
ERAFVPAPTQSMGELYA
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mRNA from alignment at M-pyrifera_M_contig118890:17..280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118890.3878.1 ID=mRNA_M-pyrifera_M_contig118890.3878.1|Name=mRNA_M-pyrifera_M_contig118890.3878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig118890:17..280- (Macrocystis pyrifera P11B4 male)
GTGACGATCCGTTTCGAAGCGCTGGGAAGTGCTCCCATCCTTGCGCGGCC
CAGTATCAAGTGTTCGGCCGACAAGACGGTCCTAGAGGTACAAGAGTTCT
TGAGGAGGAAGCTGGAGGTGGAAGCTGGTGACGCTGTGGTGCGTACGCGT
TCTCAGCGCCTCCACCCTCCTTTCCTCTCATTTTCTTCGTCCTCTCCTCA
GTACCTGGTGTGCGAACGGGCGTTTGTTCCAGCCCCAACGCAAAGCATGG
GCGAGCTGTATGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118890:17..280-

>mRNA_M-pyrifera_M_contig118890.3878.1 ID=mRNA_M-pyrifera_M_contig118890.3878.1|Name=mRNA_M-pyrifera_M_contig118890.3878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig118890:17..280- (Macrocystis pyrifera P11B4 male)
GTGACGATCCGTTTCGAAGCGCTGGGAAGTGCTCCCATCCTTGCGCGGCC
CAGTATCAAGTGTTCGGCCGACAAGACGGTCCTAGAGGTACAAGAGTTCT
TGAGGAGGAAGCTGGAGGTGGAAGCTGGTGACGCTGTGGTGACGATCCGT
TTCGAAGCGCTGGGAAGTGCTCCCATCCTTGCGCGGCCCAGTATCAAGTG
TTCGGCCGACAAGACGGTCCTAGAGGTACAAGAGTTCTTGAGGAGGAAGC
TGGAGGTGGAAGCTGGTGACGCTGTGTACCTGGTGTGCGAACGGGCGTTT
GTTCCAGCCCCAACGCAAAGCATGGGCGAGCTGTATGCTTACCTGGTGTG
CGAACGGGCGTTTGTTCCAGCCCCAACGCAAAGCATGGGCGAGCTGTATG
CT
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