mRNA_M-pyrifera_M_contig118888.3877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118888.3877.1
Unique NamemRNA_M-pyrifera_M_contig118888.3877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A3D5DCQ6_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCQ6_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 1.690e-23
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFAN 234
            FA  LKP G+L++SGPTEN LY++GR+ AG  GKGD HH N++R+I  IT  GF  +RT  +PF + P+LF+V EF++
Sbjct:   18 FANILKPAGKLLVSGPTENLLYKLGRVAAGFHGKGDYHHTNVNRLIEDITAHGFRHVRTVPIPFPILPSLFKVCEFSS 95          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A7C3EN46_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C3EN46_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 7.560e-19
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   10 KLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFAN 234
            K+K  G+LIISGPTEN +YRIGR+ AG  GKGD HH NID +I    E GF     R +PF++ P LF+V  F  
Sbjct:  145 KMKSNGKLIISGPTENIVYRIGRLLAGFAGKGDYHHRNIDDIINTSIENGFEVQEVRYLPFKIPPYLFKVISFVK 219          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A0P6X897_9CHLR (Uncharacterized protein n=1 Tax=Leptolinea tardivitalis TaxID=229920 RepID=A0A0P6X897_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 2.220e-15
Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFANAP 240
            F  ++KPGGRLI+SGPTEN+LYR GR  AG  GK   H  NI  +     E GF+      +PFR  P LF +  F N P
Sbjct:  148 FQSRIKPGGRLILSGPTENYLYRFGRFLAGYSGKIHYHRNNIYGLERIAREMGFILKDKSILPFRFLPPLFNILLFENPP 227          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A847G1F0_9CHLR (Class I SAM-dependent methyltransferase n=1 Tax=Leptolinea sp. TaxID=2699749 RepID=A0A847G1F0_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 4.880e-15
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFAN 234
            F  K+KPGG LI+SGPTEN +Y IGR+ AG GGKG  H  NI  +     + GF+  +   +PF++ P LF +  F N
Sbjct:  155 FRNKIKPGGCLIMSGPTENFIYHIGRILAGFGGKGRYHKTNIFHLEKNALDAGFILDKKETLPFKIPPFLFNILVFRN 232          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A7C1ETX1_9PROT (Methyltransferase domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C1ETX1_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 8.210e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   13 LKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFANA 237
            LK  GRLIISGPTEN  Y++GR  AG  GKGD H  NI+ +   I + GFV +  + +P      LF++ EF  A
Sbjct:  146 LKANGRLIISGPTENTFYKLGRFLAGFSGKGDYHIHNIEHIKKEIIKAGFVLINEKSLPLPFLK-LFKILEFKKA 219          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: UPI0019B44733 (Class I SAM-dependent methyltransferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=UPI0019B44733)

HSP 1 Score: 60.5 bits (145), Expect = 3.730e-9
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFANA 237
            F   LKPGG L++S PTEN LYR+GR  AG  G    HH N   +   I   GF   RT+ +P     +++ V ++A A
Sbjct:  147 FRTWLKPGGALLVSLPTENALYRLGRRLAGFSGH--YHHANAGTIDPVIVRTGFRKERTQKIPVGGPMSIYWVMDYARA 223          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: UPI001AF7FE16 (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI001AF7FE16)

HSP 1 Score: 57.8 bits (138), Expect = 4.010e-8
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRL 198
             A KLKPGGRLI+SGPTE+ LY+IGR   G     + H  N+  +   I + GF   RT   P RL
Sbjct:  150 IARKLKPGGRLIMSGPTESTLYKIGRFMVGYNKYHEYHRNNVYLLKQGILDNGFRLERTAFFPNRL 215          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A2V8ATU5_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8ATU5_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 5.220e-8
Identity = 32/80 (40.00%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQG--FVPLRTRGVPFRLAPALFRVAEFAN 234
            F   LKPGG L++SGPTE+ LY+IGRM AG   KG  H  +I  V   IT     F  +  R +P       F +  +A 
Sbjct:  142 FGDALKPGGTLVVSGPTESALYKIGRMLAGFARKGGYHRTDIFHVHETITRDRARFDVVAHRALPLTHIVEAFHIYAYAR 221          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A2D7I5A4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7I5A4_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 7.340e-7
Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAE 225
            FA KL P G+LI+S PTEN LY+ GR  AG   KG  H   I  +  A     F   + R +P      LF V+ 
Sbjct:  145 FARKLAPQGKLILSVPTENVLYKFGRAVAGFSEKGHYHRTGIKELRLAARRADFSETQIRQIPMPGPGCLFHVSS 219          
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Match: A0A6I1QTD6_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1QTD6_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 7.700e-7
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGG---KGDEHHPNIDRVIAAITEQGFVPLRTRGVPFRLAPALFRVAEFANAPI 243
            F   LKPGGRL++SGPTE+ +Y+ GR  AG      +G+ HH +I  +   +  Q  V  R   VP R  P  F +  +A A +
Sbjct:  147 FKRLLKPGGRLVVSGPTESFMYKAGRAVAGFLNSHYRGEYHHRDIFDIDRELRAQWRVE-RATWVPRRPLPRAFLLTRYAPAQV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118888.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A3D5DCQ6_9GAMM1.690e-2353.85Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A7C3EN46_9BACT7.560e-1953.33Class I SAM-dependent methyltransferase n=1 Tax=Ig... [more]
A0A0P6X897_9CHLR2.220e-1547.50Uncharacterized protein n=1 Tax=Leptolinea tardivi... [more]
A0A847G1F0_9CHLR4.880e-1546.15Class I SAM-dependent methyltransferase n=1 Tax=Le... [more]
A0A7C1ETX1_9PROT8.210e-1346.67Methyltransferase domain-containing protein n=1 Ta... [more]
UPI0019B447333.730e-940.51Class I SAM-dependent methyltransferase n=1 Tax=My... [more]
UPI001AF7FE164.010e-846.97Methyltransferase domain-containing protein n=1 Ta... [more]
A0A2V8ATU5_9BACT5.220e-840.00Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A2D7I5A4_9DELT7.340e-740.00Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A6I1QTD6_9CHLR7.700e-738.10Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118888contigM-pyrifera_M_contig118888:300..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.5209591-CDS-M-pyrifera_M_contig118888:299..5451622815707.5209591-CDS-M-pyrifera_M_contig118888:299..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118888 300..545 -
1692277531.7849755-CDS-M-pyrifera_M_contig118888:299..5451692277531.7849755-CDS-M-pyrifera_M_contig118888:299..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118888 300..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118888.3877.1prot_M-pyrifera_M_contig118888.3877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118888 300..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118888.3877.1

>prot_M-pyrifera_M_contig118888.3877.1 ID=prot_M-pyrifera_M_contig118888.3877.1|Name=mRNA_M-pyrifera_M_contig118888.3877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
FAVKLKPGGRLIISGPTENHLYRIGRMNAGCGGKGDEHHPNIDRVIAAIT
EQGFVPLRTRGVPFRLAPALFRVAEFANAPI*
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mRNA from alignment at M-pyrifera_M_contig118888:300..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118888.3877.1 ID=mRNA_M-pyrifera_M_contig118888.3877.1|Name=mRNA_M-pyrifera_M_contig118888.3877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig118888:300..545- (Macrocystis pyrifera P11B4 male)
TTCGCCGTGAAGCTGAAACCCGGCGGGCGCCTGATTATTTCCGGCCCGAC GGAAAATCATCTGTACCGGATCGGGCGGATGAATGCCGGGTGCGGCGGCA AGGGGGATGAACATCACCCGAACATCGATCGCGTGATCGCCGCCATCACC GAACAGGGGTTCGTCCCGCTGCGCACGCGTGGCGTACCGTTTCGATTGGC ACCCGCTTTGTTCAGGGTCGCGGAATTCGCGAACGCGCCGATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118888:300..545-

>mRNA_M-pyrifera_M_contig118888.3877.1 ID=mRNA_M-pyrifera_M_contig118888.3877.1|Name=mRNA_M-pyrifera_M_contig118888.3877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig118888:300..545- (Macrocystis pyrifera P11B4 male)
TTCGCCGTGAAGCTGAAACCCGGCGGGCGCCTGATTATTTCCGGCCCGAC
GGAAAATCATCTGTACCGGATCGGGCGGATGAATGCCGGGTGCGGCGGCA
AGGGGGATGAACATCACCCGAACATCGATCGCGTGATCGCCGCCATCACC
GAACAGGGGTTCGTCCCGCTGCGCACGCGTGGCGTACCGTTTCGATTGGC
ACCCGCTTTGTTCAGGGTCGCGGAATTCGCGAACGCGCCGATCTGATTCG
CCGTGAAGCTGAAACCCGGCGGGCGCCTGATTATTTCCGGCCCGACGGAA
AATCATCTGTACCGGATCGGGCGGATGAATGCCGGGTGCGGCGGCAAGGG
GGATGAACATCACCCGAACATCGATCGCGTGATCGCCGCCATCACCGAAC
AGGGGTTCGTCCCGCTGCGCACGCGTGGCGTACCGTTTCGATTGGCACCC
GCTTTGTTCAGGGTCGCGGAATTCGCGAACGCGCCGATCTGA
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