mRNA_M-pyrifera_M_contig118766.3864.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118766.3864.1
Unique NamemRNA_M-pyrifera_M_contig118766.3864.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118766.3864.1 vs. uniprot
Match: A0A1Z9UBL4_9GAMM (AmiS/UreI transporter n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UBL4_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.310e-9
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    7 RKDFGKLLPYSVISIGVLTCWVPGLLILTENW 102
            +KDFG  LPY+ I +GV TCW+PGLL+LT NW
Sbjct:  133 QKDFGTFLPYATICVGVFTCWIPGLLVLTGNW 164
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BLAST of mRNA_M-pyrifera_M_contig118766.3864.1 vs. uniprot
Match: A0A3D5D9B4_9GAMM (AmiS/UreI transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5D9B4_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 5.530e-8
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 VPRKDFGKLLPYSVISIGVLTCWVPGLLILTENW 102
            V +KD G  LPY VI++G+ TCW+PG+L+LT++W
Sbjct:  131 VLQKDLGNFLPYFVIAVGIGTCWIPGMLMLTDHW 164
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BLAST of mRNA_M-pyrifera_M_contig118766.3864.1 vs. uniprot
Match: A0A083ZZR4_9GAMM (Acid-activated urea channel n=2 Tax=unclassified Serratia TaxID=2647522 RepID=A0A083ZZR4_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 3.300e-6
Identity = 15/32 (46.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    7 RKDFGKLLPYSVISIGVLTCWVPGLLILTENW 102
            ++D G+ LP+  + +G+ TCW+PG+L+LT NW
Sbjct:  133 KRDLGRALPHMTLLVGIFTCWLPGILMLTGNW 164
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BLAST of mRNA_M-pyrifera_M_contig118766.3864.1 vs. uniprot
Match: R2SSX3_9ENTE (Uncharacterized protein n=19 Tax=Enterococcaceae TaxID=81852 RepID=R2SSX3_9ENTE)

HSP 1 Score: 46.6 bits (109), Expect = 4.580e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 VPRKDFGKLLPYSVISIGVLTCWVPGLLILTENW 102
            V +K+ GK + Y  I  GV+TCW+PG L+LT NW
Sbjct:  128 VLKKEIGKPVLYYAIFEGVVTCWIPGFLMLTNNW 161
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118766.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1Z9UBL4_9GAMM1.310e-965.63AmiS/UreI transporter n=3 Tax=Gammaproteobacteria ... [more]
A0A3D5D9B4_9GAMM5.530e-855.88AmiS/UreI transporter n=1 Tax=Gammaproteobacteria ... [more]
A0A083ZZR4_9GAMM3.300e-646.88Acid-activated urea channel n=2 Tax=unclassified S... [more]
R2SSX3_9ENTE4.580e-552.94Uncharacterized protein n=19 Tax=Enterococcaceae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118766contigM-pyrifera_M_contig118766:5..109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.7475646-CDS-M-pyrifera_M_contig118766:4..1091622815706.7475646-CDS-M-pyrifera_M_contig118766:4..109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118766 5..109 +
1692277531.3573804-CDS-M-pyrifera_M_contig118766:4..1091692277531.3573804-CDS-M-pyrifera_M_contig118766:4..109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118766 5..109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118766.3864.1prot_M-pyrifera_M_contig118766.3864.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118766 5..109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118766.3864.1

>prot_M-pyrifera_M_contig118766.3864.1 ID=prot_M-pyrifera_M_contig118766.3864.1|Name=mRNA_M-pyrifera_M_contig118766.3864.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
VPRKDFGKLLPYSVISIGVLTCWVPGLLILTENW*
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mRNA from alignment at M-pyrifera_M_contig118766:5..109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118766.3864.1 ID=mRNA_M-pyrifera_M_contig118766.3864.1|Name=mRNA_M-pyrifera_M_contig118766.3864.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig118766:5..109+ (Macrocystis pyrifera P11B4 male)
GTGCCGAGAAAGGATTTCGGCAAGTTGCTGCCCTACAGTGTTATTTCGAT
CGGCGTGCTTACGTGCTGGGTGCCGGGCTTGTTGATCCTCACCGAGAACT
GGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118766:5..109+

>mRNA_M-pyrifera_M_contig118766.3864.1 ID=mRNA_M-pyrifera_M_contig118766.3864.1|Name=mRNA_M-pyrifera_M_contig118766.3864.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig118766:5..109+ (Macrocystis pyrifera P11B4 male)
GTGCCGAGAAAGGATTTCGGCAAGTTGCTGCCCTACAGTGTTATTTCGAT
CGGCGTGCTTACGTGCTGGGTGCCGGGCTTGTTGATCCTCACCGAGAACT
GGTAAGTGCCGAGAAAGGATTTCGGCAAGTTGCTGCCCTACAGTGTTATT
TCGATCGGCGTGCTTACGTGCTGGGTGCCGGGCTTGTTGATCCTCACCGA
GAACTGGTAA
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