mRNA_M-pyrifera_M_contig11875.3858.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11875.3858.1
Unique NamemRNA_M-pyrifera_M_contig11875.3858.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11875.3858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11875contigM-pyrifera_M_contig11875:8616..9112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size499
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.257681-CDS-M-pyrifera_M_contig11875:8615..89331622815706.257681-CDS-M-pyrifera_M_contig11875:8615..8933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11875 8616..8933 +
1692277531.136609-CDS-M-pyrifera_M_contig11875:8615..89331692277531.136609-CDS-M-pyrifera_M_contig11875:8615..8933Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11875 8616..8933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.2755172-UTR-M-pyrifera_M_contig11875:8933..91121622815706.2755172-UTR-M-pyrifera_M_contig11875:8933..9112Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11875 8934..9112 +
1692277531.1483514-UTR-M-pyrifera_M_contig11875:8933..91121692277531.1483514-UTR-M-pyrifera_M_contig11875:8933..9112Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11875 8934..9112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11875.3858.1prot_M-pyrifera_M_contig11875.3858.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11875 8616..8933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11875.3858.1

>prot_M-pyrifera_M_contig11875.3858.1 ID=prot_M-pyrifera_M_contig11875.3858.1|Name=mRNA_M-pyrifera_M_contig11875.3858.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
FVEQPQAEKTSSTGYFLFLFELFIVVLTPTTCFFSFFRAASLQTTITENG
PSRVPRTFGAVSQCPPARLPPVKAPLAIYGNNISGTGYLLPLSNPGNDER
YTALP*
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mRNA from alignment at M-pyrifera_M_contig11875:8616..9112+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11875.3858.1 ID=mRNA_M-pyrifera_M_contig11875.3858.1|Name=mRNA_M-pyrifera_M_contig11875.3858.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=497bp|location=Sequence derived from alignment at M-pyrifera_M_contig11875:8616..9112+ (Macrocystis pyrifera P11B4 male)
TTTGTCGAACAGCCCCAGGCTGAAAAAACAAGTTCGACTGGTTATTTCTT
ATTCTTATTCGAGCTTTTCATTGTCGTTTTAACACCAACCACTTGTTTTT
TCAGTTTTTTTCGTGCTGCTTCGCTCCAAACGACCATCACAGAAAACGGA
CCGTCCCGCGTCCCCCGCACGTTCGGCGCAGTCAGCCAGTGCCCTCCGGC
CCGCTTACCACCCGTAAAAGCACCGCTCGCTATATACGGCAACAATATAT
CTGGTACCGGGTACTTACTACCTCTCTCCAACCCCGGCAACGACGAGCGC
TACACAGCCCTACCCTAACCATAGAGCCAGCGCGTGAAACCCCTCCAACA
CTGATGATACCAGGAGGAGGGGGGAAAAGTGCCGGTCACCCTTGGGGACA
CGACGCCTTTTGCGACGAAAAACACTCACAAAGGACCCGCCCGTTTCACG
GTACGAAACACATCCGTCCGCAGATGGAACGGATGAGTGGGGTGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11875:8616..9112+

>mRNA_M-pyrifera_M_contig11875.3858.1 ID=mRNA_M-pyrifera_M_contig11875.3858.1|Name=mRNA_M-pyrifera_M_contig11875.3858.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig11875:8616..9112+ (Macrocystis pyrifera P11B4 male)
TTTGTCGAACAGCCCCAGGCTGAAAAAACAAGTTCGACTGGTTATTTCTT
ATTCTTATTCGAGCTTTTCATTGTCGTTTTAACACCAACCACTTGTTTTT
TCAGTTTTTTTCGTGCTGCTTCGCTCCAAACGACCATCACAGAAAACGGA
CCGTCCCGCGTCCCCCGCACGTTCGGCGCAGTCAGCCAGTGCCCTCCGGC
CCGCTTACCACCCGTAAAAGCACCGCTCGCTATATACGGCAACAATATAT
CTGGTACCGGGTACTTACTACCTCTCTCCAACCCCGGCAACGACGAGCGC
TACACAGCCCTACCCTAATTTGTCGAACAGCCCCAGGCTGAAAAAACAAG
TTCGACTGGTTATTTCTTATTCTTATTCGAGCTTTTCATTGTCGTTTTAA
CACCAACCACTTGTTTTTTCAGTTTTTTTCGTGCTGCTTCGCTCCAAACG
ACCATCACAGAAAACGGACCGTCCCGCGTCCCCCGCACGTTCGGCGCAGT
CAGCCAGTGCCCTCCGGCCCGCTTACCACCCGTAAAAGCACCGCTCGCTA
TATACGGCAACAATATATCTGGTACCGGGTACTTACTACCTCTCTCCAAC
CCCGGCAACGACGAGCGCTACACAGCCCTACCCTAA
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