mRNA_M-pyrifera_M_contig118737.3856.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118737.3856.1
Unique NamemRNA_M-pyrifera_M_contig118737.3856.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: A0A2G8JZ33_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JZ33_STIJA)

HSP 1 Score: 62.4 bits (150), Expect = 3.850e-9
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 PERGAALVIAKKKAKELKRARKEARKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            P+ G   ++A K+ KEL   RK  +K  ++VLDEE Y+E L+KII+RDFFPDLP +  Q  YL+A ++ND
Sbjct:    4 PKVGEKALVAAKENKELAIVRK--KKPSKIVLDEETYVEDLEKIIQRDFFPDLPKLKVQKEYLEAKQRND 71          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: A0A6V7LTK9_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LTK9_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 4.940e-9
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   70 ARKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKNDGRSMAAL 231
            A+K +  +LDEEAY+E L KIIERDFFPDL  + AQ  YL AVE ND + M  L
Sbjct:   35 AKKSKATILDEEAYIERLGKIIERDFFPDLERLKAQNDYLDAVEHNDVKKMREL 88          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: UPI0009E43F44 (protein DGCR14-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E43F44)

HSP 1 Score: 61.2 bits (147), Expect = 9.680e-9
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   58 ARKEARKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            AR+  RKR   VLDEE Y++SL+KII+RDFFP+LP + AQ  YL AVE ND
Sbjct:   20 ARESDRKRNVKVLDEETYVQSLNKIIQRDFFPELPKLQAQHEYLDAVEHND 70          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: A0A6P8YH71_THRPL (splicing factor ESS-2 homolog n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YH71_THRPL)

HSP 1 Score: 60.5 bits (145), Expect = 1.810e-8
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   76 KRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKNDGRSMAAL 231
            +R+Q VLDE+AY+E + KI+ERDFFPDL  + AQ  YL+A+++ND R+M  L
Sbjct:   40 RRKQKVLDEDAYIEQIGKIVERDFFPDLEKLRAQNRYLEAMDQNDVRTMREL 91          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: A0A8J1XP94_OWEFU (Ofus.G041988 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XP94_OWEFU)

HSP 1 Score: 59.3 bits (142), Expect = 4.630e-8
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1
Query:   76 KRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            K ++ VLDEEAY E ++KII+RDFFPDL  ++AQ  YL+A+EKND
Sbjct:   25 KEQKTVLDEEAYSEGIEKIIKRDFFPDLSKLEAQAEYLEALEKND 69          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: F2US30_SALR5 (Dgcr14 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2US30_SALR5)

HSP 1 Score: 59.3 bits (142), Expect = 4.740e-8
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1
Query:   73 RKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            RK++++VL+E+ Y+ +L+KII+RDFFPDLP++ AQ  YL A+E ND
Sbjct:   98 RKKKKLVLEEDEYVSALEKIIQRDFFPDLPMLQAQADYLDALESND 143          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: A0A452I137_9SAUR (Ess-2 splicing factor homolog n=12 Tax=Durocryptodira TaxID=1579337 RepID=A0A452I137_9SAUR)

HSP 1 Score: 58.9 bits (141), Expect = 6.290e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   10 GAALVIAKKKAKELKRARKEARKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKNDGRSM 222
            GAA+ +       L+ A +E  KRR+ +LDEE+Y+ESL+KII+RDFFPD+  + AQ  YL+A E  D   M
Sbjct:   26 GAAVAV-------LREAAQEPPKRRKRILDEESYIESLEKIIQRDFFPDVEKLRAQKEYLEAEESGDLEKM 89          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: UPI001D0664D4 (splicing factor ESS-2 homolog n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0664D4)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-7
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   73 RKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            +KR+Q++LDE++Y+E + KII+RDFFP L  + AQ  YL AVEKND
Sbjct:   35 KKRKQIILDEDSYVEEIGKIIQRDFFPSLEKMKAQNDYLDAVEKND 80          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: UPI001ED88FD2 (splicing factor ESS-2 homolog isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88FD2)

HSP 1 Score: 58.2 bits (139), Expect = 1.180e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   91 VLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            +LDEEAY+E + KII+RDFFPDL  V AQ  YL AVEKND
Sbjct:   54 ILDEEAYIEEMGKIIQRDFFPDLEKVKAQNEYLDAVEKND 93          
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Match: UPI001C448A57 (splicing factor ESS-2 homolog isoform X1 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C448A57)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-7
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   16 ALVIAKKKAKELKRARKEARKRRQVVLDEEAYLESLDKIIERDFFPDLPLVDAQLAYLQAVEKND 210
            AL +A++  +  K+  K A +RR+ V+DEE Y++ ++KIIERDFFPDL  +  +L YL+A E ND
Sbjct:   15 ALQVAEQNVEIFKKPDKPAARRRKKVMDEETYIKEVEKIIERDFFPDLENLKEKLDYLEAKEMND 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118737.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8JZ33_STIJA3.850e-950.00Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A6V7LTK9_9HYME4.940e-959.26Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
UPI0009E43F449.680e-962.75protein DGCR14-like n=1 Tax=Orbicella faveolata Ta... [more]
A0A6P8YH71_THRPL1.810e-855.77splicing factor ESS-2 homolog n=1 Tax=Thrips palmi... [more]
A0A8J1XP94_OWEFU4.630e-862.22Ofus.G041988 protein n=1 Tax=Owenia fusiformis Tax... [more]
F2US30_SALR54.740e-856.52Dgcr14 protein n=1 Tax=Salpingoeca rosetta (strain... [more]
A0A452I137_9SAUR6.290e-847.89Ess-2 splicing factor homolog n=12 Tax=Durocryptod... [more]
UPI001D0664D41.170e-758.70splicing factor ESS-2 homolog n=1 Tax=Coccinella s... [more]
UPI001ED88FD21.180e-770.00splicing factor ESS-2 homolog isoform X1 n=2 Tax=I... [more]
UPI001C448A571.550e-747.69splicing factor ESS-2 homolog isoform X1 n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118737contigM-pyrifera_M_contig118737:9..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.1
Seed ortholog evalue7.2e-07
Seed eggNOG ortholog946362.XP_004987999.1
Preferred nameDGCR14
KEGG koko:K13118
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048731,GO:0048856,GO:0071013,GO:0071014,GO:0071704,GO:0072686,GO:0090304,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGs39S3X@33154,KOG2627@1,KOG2627@2759
COG Functional cat.K
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.2122898-CDS-M-pyrifera_M_contig118737:8..3201622815706.2122898-CDS-M-pyrifera_M_contig118737:8..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118737 9..320 -
1692277531.11663-CDS-M-pyrifera_M_contig118737:8..3201692277531.11663-CDS-M-pyrifera_M_contig118737:8..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118737 9..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118737.3856.1prot_M-pyrifera_M_contig118737.3856.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118737 9..320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118737.3856.1

>prot_M-pyrifera_M_contig118737.3856.1 ID=prot_M-pyrifera_M_contig118737.3856.1|Name=mRNA_M-pyrifera_M_contig118737.3856.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
PERGAALVIAKKKAKELKRARKEARKRRQVVLDEEAYLESLDKIIERDFF
PDLPLVDAQLAYLQAVEKNDGRSMAALQRHIRRIQEAQSAPGGAESAQGG
GTAA
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mRNA from alignment at M-pyrifera_M_contig118737:9..320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118737.3856.1 ID=mRNA_M-pyrifera_M_contig118737.3856.1|Name=mRNA_M-pyrifera_M_contig118737.3856.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig118737:9..320- (Macrocystis pyrifera P11B4 male)
CCTGAGCGAGGGGCGGCGCTGGTGATCGCTAAGAAGAAGGCTAAGGAGCT GAAGCGGGCACGGAAGGAGGCGCGGAAGCGGCGGCAGGTGGTGCTGGACG AGGAGGCCTACCTCGAGTCACTGGACAAGATCATCGAGCGCGACTTCTTC CCCGACCTCCCCCTCGTGGACGCGCAGCTGGCCTACCTCCAGGCGGTGGA GAAGAACGACGGCCGGAGCATGGCGGCCCTCCAGCGCCACATCCGCCGCA TCCAAGAAGCGCAGAGTGCGCCGGGGGGAGCGGAGAGCGCCCAGGGCGGC GGCACTGCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118737:9..320-

>mRNA_M-pyrifera_M_contig118737.3856.1 ID=mRNA_M-pyrifera_M_contig118737.3856.1|Name=mRNA_M-pyrifera_M_contig118737.3856.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig118737:9..320- (Macrocystis pyrifera P11B4 male)
CCTGAGCGAGGGGCGGCGCTGGTGATCGCTAAGAAGAAGGCTAAGGAGCT
GAAGCGGGCACGGAAGGAGGCGCGGAAGCGGCGGCAGGTGGTGCTGGACG
AGGAGGCCTACCTCGAGTCACTGGACAAGATCATCGAGCGCGACTTCTTC
CCCGACCTCCCCCTCGTGGACGCGCAGCTGGCCTACCTCCAGGCGGTGGA
GAAGAACGACGGCCGGAGCATGGCGGCCCTCCAGCGCCACATCCGCCGCA
TCCAAGAAGCGCAGAGTGCGCCGGGGGGAGCGGAGAGCGCCCAGGGCGGC
GGCACTGCAGCGCCTGAGCGAGGGGCGGCGCTGGTGATCGCTAAGAAGAA
GGCTAAGGAGCTGAAGCGGGCACGGAAGGAGGCGCGGAAGCGGCGGCAGG
TGGTGCTGGACGAGGAGGCCTACCTCGAGTCACTGGACAAGATCATCGAG
CGCGACTTCTTCCCCGACCTCCCCCTCGTGGACGCGCAGCTGGCCTACCT
CCAGGCGGTGGAGAAGAACGACGGCCGGAGCATGGCGGCCCTCCAGCGCC
ACATCCGCCGCATCCAAGAAGCGCAGAGTGCGCCGGGGGGAGCGGAGAGC
GCCCAGGGCGGCGGCACTGCAGCG
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