mRNA_M-pyrifera_M_contig118722.3853.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118722.3853.1
Unique NamemRNA_M-pyrifera_M_contig118722.3853.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A0D2UGI3_CAPO3 (SMC hinge domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UGI3_CAPO3)

HSP 1 Score: 155 bits (391), Expect = 2.330e-40
Identity = 81/181 (44.75%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITEEKISAVQSELK 543
            IKYMKEQ +G  TF+PL+ IS KP +EQLR +  S +L+LDV++ E ++R A  +ACGN VVC+ L EA+   FG+   +RLK+VT+ G  IHKSG++TGGL   ++ RA  W+Q+++EKLK++RD+L  E+ E+ R     +  + L AQ  G++TR K+   + Q+  EK+ A + +L+
Sbjct:  394 IKYMKEQHIGMMTFLPLDGISVKPTDEQLRALGGSCRLLLDVIQCEPSVRRALQFACGNAVVCDTLQEARETTFGK--NQRLKIVTLDGTCIHKSGLITGGLGG-IDGRANRWDQQEVEKLKRERDNLTTELTELSRKRRKAADLENLRAQLNGMETRNKYLKSEAQVNREKVLAAEKDLQ 571
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: L8H1I6_ACACA (Structural maintenance of chromosomes protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1I6_ACACA)

HSP 1 Score: 145 bits (367), Expect = 3.940e-37
Identity = 80/182 (43.96%), Postives = 126/182 (69.23%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQ---IDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITEEKISAVQSE 537
            I Y+KEQR+GTATF+PL ++  KP++E+LR      +S KL++D+++F++ ++ A +YA GNTV C+ L EAK+LAF R   + L+ V+  G +I KSG+MTGG    + A+AK+W++K +E LKK+RD  + E+ EV R L   +REQ+L +Q  G+Q RL    +DL +T++K++  + E
Sbjct:  564 INYLKEQRVGTATFLPLSSLKVKPIHERLRNQLATSKSAKLIIDLLKFDSRIQKAVLYAVGNTVYCDTLDEAKTLAFDRA--QPLRTVSKNGTLIRKSGLMTGG--PGIGAKAKKWDEKKVEGLKKKRDKYITELQEVGRTLRGVTREQQLTSQTQGLQGRLDNFKIDLGLTKDKLTRTREE 741
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: UPI00077A1896 (structural maintenance of chromosomes protein 1A-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1896)

HSP 1 Score: 143 bits (360), Expect = 2.840e-36
Identity = 75/171 (43.86%), Postives = 122/171 (71.35%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFEN-ALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITE 510
            I+Y++EQR     F+PL+ I  KPVNE+LRQI  S KL++DVVRFE   ++ A  +ACGN++VC+ + EA+ LAFG  G ER K V++ G++  KSG+++GG+S  ++A+A+ W++K ++ LK++RDSL++E+ E+ +H   +   Q L +Q  G++ RL+++T D + TE
Sbjct:  240 IQYLREQRAEPEMFLPLDGIQVKPVNEKLRQIGGSAKLIIDVVRFEPPVIKRALQFACGNSLVCDGMEEARKLAFG--GAERKKTVSLDGILFQKSGVISGGVSD-LKAKARRWDEKQVDGLKRKRDSLLSELKELSKHRRKEPELQNLRSQIDGLEHRLRYSTKDKETTE 407
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: UPI001CF5CE29 (structural maintenance of chromosomes protein 1A-like isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF5CE29)

HSP 1 Score: 143 bits (360), Expect = 3.440e-36
Identity = 75/171 (43.86%), Postives = 122/171 (71.35%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFEN-ALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITE 510
            I+Y++EQR     F+PL+ I  KPVNE+LRQI  S KL++DVVRFE   ++ A  +ACGN++VC+ + EA+ LAFG  G ER K V++ G++  KSG+++GG+S  ++A+A+ W++K ++ LK++RDSL++E+ E+ +H   +   Q L +Q  G++ RL+++T D + TE
Sbjct:  554 IQYLREQRAEPEMFLPLDGIQVKPVNEKLRQIGGSAKLIIDVVRFEPPVIKRALQFACGNSLVCDGMEEARKLAFG--GAERKKTVSLDGILFQKSGVISGGVSD-LKAKARRWDEKQVDGLKRKRDSLLSELKELSKHRRKEPELQNLRSQIDGLEHRLRYSTKDKETTE 721
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A453RVU6_AEGTS (SMC hinge domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453RVU6_AEGTS)

HSP 1 Score: 138 bits (348), Expect = 3.660e-35
Identity = 73/165 (44.24%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVD 495
            IKY+KEQRL   TFIPL++I  KP+ E+LR +  S +L+ DV++F+ AL  A +YA GNT+VC+ L EAK+L++     ER KVVTV G+++ KSG MTGG+S  MEAR+ +W+   +E LKK++  L AEM+E+      + +E  +  +  G++ +L ++ V+
Sbjct:   91 IKYLKEQRLPPQTFIPLQSIRVKPITERLRTLGGSAQLIFDVIQFDRALEKAVLYAVGNTLVCDKLDEAKTLSWSG---ERYKVVTVDGILLTKSGTMTGGVSGGMEARSNKWDDSRIESLKKKKSKLEAEMSELGSPRELQRKELAVSEKITGLEKKLHYSNVE 252
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A6U9R7I1_9CHLO (Structural maintenance of chromosomes protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9R7I1_9CHLO)

HSP 1 Score: 139 bits (351), Expect = 5.560e-35
Identity = 75/180 (41.67%), Postives = 119/180 (66.11%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITEEKISAVQSEL 540
            I+Y+KEQR+   TF+PL TI  KPVNE+LR +  + +LVLDV+ ++     A +YACG TVVC+ + EAK L F  P  ERLKVV+  G +IHKSGM+TGG++  +EARA  +  + +E ++++R     E+ E+      + +EQ+L  +  G++ ++++  VD ++T+EKI  V+ E+
Sbjct:  566 IRYLKEQRIPPMTFLPLATILTKPVNERLRTLGGTSRLVLDVLDYDPQYERAMIYACGGTVVCDRIEEAKRLGFSGP--ERLKVVSTDGTLIHKSGMITGGVTGGLEARASRFNAQAVEGIQQERARYTKELQEISGGRVVQVQEQELNTRIDGLEKKIQYIEVDHKVTQEKIEKVKGEV 743
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A453RVQ2_AEGTS (SMC hinge domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453RVQ2_AEGTS)

HSP 1 Score: 138 bits (348), Expect = 9.810e-35
Identity = 73/165 (44.24%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVD 495
            IKY+KEQRL   TFIPL++I  KP+ E+LR +  S +L+ DV++F+ AL  A +YA GNT+VC+ L EAK+L++     ER KVVTV G+++ KSG MTGG+S  MEAR+ +W+   +E LKK++  L AEM+E+      + +E  +  +  G++ +L ++ V+
Sbjct:  336 IKYLKEQRLPPQTFIPLQSIRVKPITERLRTLGGSAQLIFDVIQFDRALEKAVLYAVGNTLVCDKLDEAKTLSWSG---ERYKVVTVDGILLTKSGTMTGGVSGGMEARSNKWDDSRIESLKKKKSKLEAEMSELGSPRELQRKELAVSEKITGLEKKLHYSNVE 497
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A2R6WD35_MARPO (SMC hinge domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WD35_MARPO)

HSP 1 Score: 139 bits (349), Expect = 1.010e-34
Identity = 74/179 (41.34%), Postives = 121/179 (67.60%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVDLQITEEKISAVQSE 537
            IKY+KEQRL   TFIPL+++  KPV E+LR +  + KLV DV+  + AL  A VYA GNT+VC+ L EAK+L++G    ER K+VT+ G+++ KSG MTGG+S  MEAR+++W+ + +E LKK++++  AEMAE+      +S+E  +  + +G + ++ ++ ++ +  + K+  +  E
Sbjct:  562 IKYLKEQRLPPQTFIPLQSVRVKPVQEKLRTLGGTAKLVFDVITIDPALEKALVYAVGNTLVCDGLDEAKALSWGH---ERHKMVTLDGILLAKSGTMTGGVSGGMEARSQKWDARAVESLKKKKETYEAEMAELGSIREMQSKEADIAGRISGCERKMHYSDIEKKGLDRKLKMLAEE 737
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BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A446YGD8_TRITD (SMC hinge domain-containing protein n=5 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446YGD8_TRITD)

HSP 1 Score: 138 bits (348), Expect = 1.280e-34
Identity = 73/165 (44.24%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVD 495
            IKY+KEQRL   TFIPL++I  KP+ E+LR +  S +L+ DV++F+ AL  A +YA GNT+VC+ L EAK+L++     ER KVVTV G+++ KSG MTGG+S  MEAR+ +W+   +E LKK++  L AEM+E+      + +E  +  +  G++ +L ++ V+
Sbjct:  559 IKYLKEQRLPPQTFIPLQSIRVKPITERLRTLGGSAQLIFDVIQFDRALEKAVLYAVGNTLVCDKLDEAKTLSWSG---ERYKVVTVDGILLTKSGTMTGGVSGGMEARSNKWDDSRIESLKKKKSKLEAEMSELGSPRELQRKELAVSEKITGLEKKLHYSNVE 720
[Close]
BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Match: A0A446YGB7_TRITD (SMC hinge domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446YGB7_TRITD)

HSP 1 Score: 138 bits (348), Expect = 1.290e-34
Identity = 73/165 (44.24%), Postives = 112/165 (67.88%), Query Frame = 1 
Query:    1 IKYMKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAFVYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLSSAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKAGVQTRLKFATVD 495
            IKY+KEQRL   TFIPL++I  KP+ E+LR +  S +L+ DV++F+ AL  A +YA GNT+VC+ L EAK+L++     ER KVVTV G+++ KSG MTGG+S  MEAR+ +W+   +E LKK++  L AEM+E+      + +E  +  +  G++ +L ++ V+
Sbjct:  173 IKYLKEQRLPPQTFIPLQSIRVKPITERLRTLGGSAQLIFDVIQFDRALEKAVLYAVGNTLVCDKLDEAKTLSWSG---ERYKVVTVDGILLTKSGTMTGGVSGGMEARSNKWDDSRIESLKKKKSKLEAEMSELGSPRELQRKELAVSEKITGLEKKLHYSNVE 334
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118722.3853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UGI3_CAPO32.330e-4044.75SMC hinge domain-containing protein n=2 Tax=Capsas... [more]
L8H1I6_ACACA3.940e-3743.96Structural maintenance of chromosomes protein n=1 ... [more]
UPI00077A18962.840e-3643.86structural maintenance of chromosomes protein 1A-l... [more]
UPI001CF5CE293.440e-3643.86structural maintenance of chromosomes protein 1A-l... [more]
A0A453RVU6_AEGTS3.660e-3544.24SMC hinge domain-containing protein n=1 Tax=Aegilo... [more]
A0A6U9R7I1_9CHLO5.560e-3541.67Structural maintenance of chromosomes protein n=1 ... [more]
A0A453RVQ2_AEGTS9.810e-3544.24SMC hinge domain-containing protein n=1 Tax=Aegilo... [more]
A0A2R6WD35_MARPO1.010e-3441.34SMC hinge domain-containing protein n=2 Tax=Marcha... [more]
A0A446YGD8_TRITD1.280e-3444.24SMC hinge domain-containing protein n=5 Tax=Tritic... [more]
A0A446YGB7_TRITD1.290e-3444.24SMC hinge domain-containing protein n=1 Tax=Tritic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118722contigM-pyrifera_M_contig118722:3..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score152.5
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog192875.XP_004347609.1
Preferred nameSMC1B
KEGG koko:K06636,ko:K19719
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04151,ko04510,ko04512,ko04974,ko05165,map04110,map04111,map04113,map04114,map04151,map04510,map04512,map04974,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0009314,GO:0009411,GO:0009416,GO:0009607,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010165,GO:0010212,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0015630,GO:0016043,GO:0016319,GO:0016322,GO:0016358,GO:0016363,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019827,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030892,GO:0030893,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032875,GO:0032876,GO:0032886,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034087,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035327,GO:0036033,GO:0042551,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048519,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0061775,GO:0061780,GO:0062022,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071168,GO:0071216,GO:0071495,GO:0071695,GO:0071704,GO:0071840,GO:0071921,GO:0072396,GO:0072402,GO:0072423,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901363,GO:1901673,GO:1902115,GO:1903047,GO:1990837,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.sister chromatid cohesion
EggNOG OGs38CKC@33154,COG1196@1,KOG0018@2759
COG Functional cat.D
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036
Exons1
Model size543
Cds size534
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.0832453-UTR-M-pyrifera_M_contig118722:2..111622815706.0832453-UTR-M-pyrifera_M_contig118722:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118722 3..11 +
1692277531.054746-UTR-M-pyrifera_M_contig118722:2..111692277531.054746-UTR-M-pyrifera_M_contig118722:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118722 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.0956175-CDS-M-pyrifera_M_contig118722:11..5451622815706.0956175-CDS-M-pyrifera_M_contig118722:11..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118722 12..545 +
1692277531.065265-CDS-M-pyrifera_M_contig118722:11..5451692277531.065265-CDS-M-pyrifera_M_contig118722:11..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118722 12..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118722.3853.1prot_M-pyrifera_M_contig118722.3853.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118722 12..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118722.3853.1

>prot_M-pyrifera_M_contig118722.3853.1 ID=prot_M-pyrifera_M_contig118722.3853.1|Name=mRNA_M-pyrifera_M_contig118722.3853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
MKEQRLGTATFIPLETISAKPVNEQLRQIDESVKLVLDVVRFENALRNAF
VYACGNTVVCEDLAEAKSLAFGRPGQERLKVVTVGGVMIHKSGMMTGGLS
SAMEARAKEWEQKDLEKLKKQRDSLVAEMAEVDRHLHTKSREQKLEAQKA
GVQTRLKFATVDLQITEEKISAVQSELK
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mRNA from alignment at M-pyrifera_M_contig118722:3..545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118722.3853.1 ID=mRNA_M-pyrifera_M_contig118722.3853.1|Name=mRNA_M-pyrifera_M_contig118722.3853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig118722:3..545+ (Macrocystis pyrifera P11B4 male)
ATCAAGTACATGAAGGAGCAGCGGCTCGGCACGGCCACGTTCATTCCGCT
GGAAACCATCAGCGCCAAGCCAGTGAACGAGCAGCTGCGGCAGATCGACG
AGAGCGTGAAGCTGGTGCTGGACGTTGTGAGGTTCGAGAACGCGCTGAGA
AACGCCTTTGTCTACGCCTGCGGCAACACTGTGGTGTGCGAGGACCTGGC
AGAGGCGAAGAGCCTCGCCTTTGGAAGGCCTGGCCAAGAACGCCTCAAGG
TGGTGACTGTGGGCGGTGTGATGATCCACAAGAGCGGAATGATGACAGGC
GGCCTCAGCTCAGCAATGGAGGCGAGGGCGAAGGAGTGGGAGCAGAAGGA
CCTCGAGAAACTCAAGAAACAGAGGGACTCGCTCGTCGCAGAGATGGCAG
AAGTCGACCGCCACCTCCACACCAAGAGCCGCGAGCAGAAACTCGAGGCG
CAGAAGGCTGGCGTCCAGACGCGGCTCAAGTTCGCGACTGTCGACCTCCA
GATCACAGAGGAGAAGATCTCTGCGGTCCAATCGGAGCTGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118722:3..545+

>mRNA_M-pyrifera_M_contig118722.3853.1 ID=mRNA_M-pyrifera_M_contig118722.3853.1|Name=mRNA_M-pyrifera_M_contig118722.3853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig118722:3..545+ (Macrocystis pyrifera P11B4 male)
ATGAAGGAGCAGCGGCTCGGCACGGCCACGTTCATTCCGCTGGAAACCAT
CAGCGCCAAGCCAGTGAACGAGCAGCTGCGGCAGATCGACGAGAGCGTGA
AGCTGGTGCTGGACGTTGTGAGGTTCGAGAACGCGCTGAGAAACGCCTTT
GTCTACGCCTGCGGCAACACTGTGGTGTGCGAGGACCTGGCAGAGGCGAA
GAGCCTCGCCTTTGGAAGGCCTGGCCAAGAACGCCTCAAGGTGGTGACTG
TGGGCGGTGTGATGATCCACAAGAGCGGAATGATGACAGGCGGCCTCAGC
TCAGCAATGGAGGCGAGGGCGAAGGAGTGGGAGCAGAAGGACCTCGAGAA
ACTCAAGAAACAGAGGGACTCGCTCGTCGCAGAGATGGCAGAAGTCGACC
GCCACCTCCACACCAAGAGCCGCGAGCAGAAACTCGAGGCGCAGAAGGCT
GGCGTCCAGACGCGGCTCAAGTTCGCGACTGTCGACCTCCAGATCACAGA
GGAGAAGATCTCTGCGGTCCAATCGGAGCTGAAGATGAAGGAGCAGCGGC
TCGGCACGGCCACGTTCATTCCGCTGGAAACCATCAGCGCCAAGCCAGTG
AACGAGCAGCTGCGGCAGATCGACGAGAGCGTGAAGCTGGTGCTGGACGT
TGTGAGGTTCGAGAACGCGCTGAGAAACGCCTTTGTCTACGCCTGCGGCA
ACACTGTGGTGTGCGAGGACCTGGCAGAGGCGAAGAGCCTCGCCTTTGGA
AGGCCTGGCCAAGAACGCCTCAAGGTGGTGACTGTGGGCGGTGTGATGAT
CCACAAGAGCGGAATGATGACAGGCGGCCTCAGCTCAGCAATGGAGGCGA
GGGCGAAGGAGTGGGAGCAGAAGGACCTCGAGAAACTCAAGAAACAGAGG
GACTCGCTCGTCGCAGAGATGGCAGAAGTCGACCGCCACCTCCACACCAA
GAGCCGCGAGCAGAAACTCGAGGCGCAGAAGGCTGGCGTCCAGACGCGGC
TCAAGTTCGCGACTGTCGACCTCCAGATCACAGAGGAGAAGATCTCTGCG
GTCCAATCGGAGCTGAAG
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