mRNA_M-pyrifera_M_contig118691.3847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118691.3847.1
Unique NamemRNA_M-pyrifera_M_contig118691.3847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A8H5I1Z4_9AGAR (Nuclear pore protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5I1Z4_9AGAR)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-13
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 ERAFEQEYLSS---SQGLQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER + + YLSS   +  L++Q++ GA+Q LEEQYL I+++ VH  P +A  GGDPS+   + A+   +  R   W    +L  +G P+WA +++ +R G +QEA
Sbjct:  262 ERKYAKAYLSSPTPALSLRKQIITGARQSLEEQYLSIIQRTVHAHPSEAQLGGDPSIANLIRAFCAVRFYRQGEWLSGLEL-VKGTPLWAQVFFIVRVGEVQEA 364
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A066VCW7_9AGAM (Nuclear pore protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066VCW7_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.360e-12
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    1 ERAFEQEYLSSSQG-----LQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L +        L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+P  ++ YLR K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct:   80 ERSFARAHLGNQDSQAATELRTRIASGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIPNRIMGYLRCKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 184
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A074RSD1_9AGAM (Nuclear pore protein n=8 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RSD1_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-12
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 ERAFEQEYLS-----SSQGLQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L      S+  L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+P  ++ YLR K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct:  265 ERSFARAHLGNQDSQSATELRTRIANGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIPNRIMGYLRCKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 369
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A0B7FMZ1_THACB (Meiotically up-regulated gene 87 protein n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FMZ1_THACB)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-12
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 ERAFEQEYLSSSQG-----LQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L + +      L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+P  ++ YLR K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct:  845 ERSFARAHLGNPESQAATELRTRIANGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIPNRIMGYLRCKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 949
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A0K6GGK2_9AGAM (Nucleoporin npp106 n=5 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6GGK2_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-12
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 ERAFEQEYLS-----SSQGLQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L      S+  L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+P  ++ YLR K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct:  265 ERSFARAHLGNQDSQSATELRTRIANGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIPNRIMGYLRCKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 369
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A8H2XPN7_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2XPN7_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.430e-12
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 ERAFEQEYLSSSQG-----LQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L + +      L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+P  ++ YLR K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct:  732 ERSFARAHLGNPESQAATELRTRIANGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIPNRIMGYLRCKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 836
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A1X7VWE9_AMPQE (Nuclear pore protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VWE9_AMPQE)

HSP 1 Score: 71.2 bits (173), Expect = 2.570e-12
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:   31 SSQGLQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRGWPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            SS  L +Q +  ++ FLE+QYL  VK  V+    Q+  GG P   + + +YL+ KH    P   D    G P+WA+++YC+RCG ++ A
Sbjct:  247 SSSNLLKQFIQKSRTFLEKQYLEYVKDLVYSNLSQSQLGGVPGTAKLIQSYLKLKHASAMPGLEDELVDGQPLWAIVFYCMRCGDLEAA 335
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: W9XKS1_9EURO (Uncharacterized protein n=1 Tax=Capronia epimyces CBS 606.96 TaxID=1182542 RepID=W9XKS1_9EURO)

HSP 1 Score: 70.9 bits (172), Expect = 3.570e-12
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:    1 ERAFEQEYLSSSQGLQ-----QQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKH------PRGWPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER + Q YL  S G +     +Q++ G++ +LE+ + R ++  + +   +AA GG PSV   V AY+R +       P G   Q D D +GD +WA+++Y +RCG ++EA
Sbjct:  457 ERQYTQAYLDESNGTEAMRFKKQMLEGSRTYLEKSFWRELRSLIEKNAREAALGGQPSVVNIVRAYIRLRAVRRDLVPDGTELQQDKDEKGDYLWAVIFYLLRCGFVKEA 566
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: A0A8H8M149_9AGAM (Nucleoporin-interacting protein NIC96 n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M149_9AGAM)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-11
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   64 GAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            GA+  LE+QYL  V   + + P  AA GGDPSV   ++ YLR    RG  W E  +L  RG P+WA ++Y +R G ++EA
Sbjct:  849 GARVGLEKQYLEFVDATIQRDPANAAIGGDPSVSNRIMGYLRCAFYRGGRWDEDLEL-LRGRPVWAHIFYLVRTGHLREA 927
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BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Match: L8WU00_THACA (Nucleoporin-interacting protein NIC96 n=1 Tax=Thanatephorus cucumeris (strain AG1-IA) TaxID=983506 RepID=L8WU00_THACA)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-11
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 ERAFEQEYLSSSQG-----LQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGGDPSVPETVLAYLRAKHPRG--WPEQWDLDARGDPIWALLYYCIRCGRIQEA 297
            ER+F + +L + +      L+ ++  GA+  LE+QY+  V   + + P  AA GGDPS+   ++ YLR+K  R   W E  +L  RG P+WA +++ IR G ++EA
Sbjct: 1083 ERSFARAHLGNPESQAATELRTRIANGARAGLEKQYIEYVDAAIQREPANAAIGGDPSIQNRIMGYLRSKFYRSGRWNEDLEL-LRGRPVWAHIFFLIRTGHLREA 1187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118691.3847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H5I1Z4_9AGAR2.930e-1338.46Nuclear pore protein n=1 Tax=Gymnopus confluens Ta... [more]
A0A066VCW7_9AGAM1.360e-1236.79Nuclear pore protein (Fragment) n=1 Tax=Rhizoctoni... [more]
A0A074RSD1_9AGAM1.390e-1237.74Nuclear pore protein n=8 Tax=Rhizoctonia solani Ta... [more]
A0A0B7FMZ1_THACB1.420e-1236.79Meiotically up-regulated gene 87 protein n=1 Tax=T... [more]
A0A0K6GGK2_9AGAM1.420e-1237.74Nucleoporin npp106 n=5 Tax=Rhizoctonia solani TaxI... [more]
A0A8H2XPN7_9AGAM1.430e-1236.79Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A1X7VWE9_AMPQE2.570e-1237.08Nuclear pore protein n=2 Tax=Amphimedon queensland... [more]
W9XKS1_9EURO3.570e-1234.55Uncharacterized protein n=1 Tax=Capronia epimyces ... [more]
A0A8H8M149_9AGAM1.250e-1143.75Nucleoporin-interacting protein NIC96 n=3 Tax=Cera... [more]
L8WU00_THACA1.260e-1135.85Nucleoporin-interacting protein NIC96 n=1 Tax=Than... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118691contigM-pyrifera_M_contig118691:179..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue6e-11
Seed eggNOG ortholog5346.XP_001828529.1
Preferred nameNIC96
KEGG koko:K14309
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016973,GO:0017038,GO:0017056,GO:0022607,GO:0022613,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044612,GO:0044615,GO:0045184,GO:0046907,GO:0046931,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051292,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:1901987,GO:1901990,GO:1902749
EggNOG free text desc.Nuclear pore protein
EggNOG OGs2262Z@155619,38B6B@33154,3NU66@4751,3UYT8@5204,3W55A@5338,KOG2168@1,KOG2168@2759
COG Functional cat.D
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.7913876-CDS-M-pyrifera_M_contig118691:178..2231622815705.7913876-CDS-M-pyrifera_M_contig118691:178..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118691 179..223 -
1692277530.9406486-CDS-M-pyrifera_M_contig118691:178..2231692277530.9406486-CDS-M-pyrifera_M_contig118691:178..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118691 179..223 -
1622815705.8029888-CDS-M-pyrifera_M_contig118691:291..5431622815705.8029888-CDS-M-pyrifera_M_contig118691:291..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118691 292..543 -
1692277530.9508982-CDS-M-pyrifera_M_contig118691:291..5431692277530.9508982-CDS-M-pyrifera_M_contig118691:291..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118691 292..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118691.3847.1prot_M-pyrifera_M_contig118691.3847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118691 179..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118691.3847.1

>prot_M-pyrifera_M_contig118691.3847.1 ID=prot_M-pyrifera_M_contig118691.3847.1|Name=mRNA_M-pyrifera_M_contig118691.3847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ERAFEQEYLSSSQGLQQQLVFGAKQFLEEQYLRIVKQFVHQRPVQAAPGG
DPSVPETVLAYLRAKHPRGWPEQWDLDARGDPIWALLYYCIRCGRIQEA
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mRNA from alignment at M-pyrifera_M_contig118691:179..543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118691.3847.1 ID=mRNA_M-pyrifera_M_contig118691.3847.1|Name=mRNA_M-pyrifera_M_contig118691.3847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=365bp|location=Sequence derived from alignment at M-pyrifera_M_contig118691:179..543- (Macrocystis pyrifera P11B4 male)
GAGCGAGCCTTCGAGCAGGAGTACCTCTCCTCCTCGCAAGGCCTGCAGCA
GCAGCTGGTGTTCGGCGCCAAGCAGTTCCTCGAGGAGCAGTACCTCCGCA
TCGTCAAGCAGTTCGTCCACCAGCGGCCGGTGCAGGCCGCGCCAGGCGGC
GACCCCAGCGTGCCCGAGACGGTGCTGGCCTACCTCCGCGCCAAGCACCC
GCGTGGCTGGCCCGAACAATGGGACCTCGACGCCAGAGGAGACCCCATCT
GGGTGCGTGCTCCCCCTCTTGGACTGCCCCTGCCCCTGCCTCGCCGCACC
TGCTGACCGGCTCTGCACAGGCACTGCTTTACTATTGCATTCGCTGCGGC
AGAATCCAGGAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118691:179..543-

>mRNA_M-pyrifera_M_contig118691.3847.1 ID=mRNA_M-pyrifera_M_contig118691.3847.1|Name=mRNA_M-pyrifera_M_contig118691.3847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig118691:179..543- (Macrocystis pyrifera P11B4 male)
GAGCGAGCCTTCGAGCAGGAGTACCTCTCCTCCTCGCAAGGCCTGCAGCA
GCAGCTGGTGTTCGGCGCCAAGCAGTTCCTCGAGGAGCAGTACCTCCGCA
TCGTCAAGCAGTTCGTCCACCAGCGGCCGGTGCAGGCCGCGCCAGGCGGC
GACCCCAGCGTGCCCGAGACGGTGCTGGCCTACCTCCGCGCCAAGCACCC
GCGTGGCTGGCCCGAACAATGGGACCTCGACGCCAGAGGAGACCCCATCT
GGGAGCGAGCCTTCGAGCAGGAGTACCTCTCCTCCTCGCAAGGCCTGCAG
CAGCAGCTGGTGTTCGGCGCCAAGCAGTTCCTCGAGGAGCAGTACCTCCG
CATCGTCAAGCAGTTCGTCCACCAGCGGCCGGTGCAGGCCGCGCCAGGCG
GCGACCCCAGCGTGCCCGAGACGGTGCTGGCCTACCTCCGCGCCAAGCAC
CCGCGTGGCTGGCCCGAACAATGGGACCTCGACGCCAGAGGAGACCCCAT
CTGGGCACTGCTTTACTATTGCATTCGCTGCGGCAGAATCCAGGAGGCCG
CACTGCTTTACTATTGCATTCGCTGCGGCAGAATCCAGGAGGCC
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