mRNA_M-pyrifera_M_contig118688.3846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118688.3846.1
Unique NamemRNA_M-pyrifera_M_contig118688.3846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A7S4HHM5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HHM5_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 1.430e-17
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLRE--QVEKYEMSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGD-SKPRRVHVSLLNDLLV 492
            Y  YV+ YE  +      ++ N VLR+  +V+  +     + T ES LI PVQRIPRY+LLL ++L++T+E HPDY  LA A  K++  A +VN R    E L KV  ++     Q+T +      +   RR+I+E  L+   G  SK R V+  L ND+LV
Sbjct:  141 YIDYVKNYENALRTLTELKKDNAVLRKLLKVQMRKCEGHEYETLESFLITPVQRIPRYNLLLGEILKHTNESHPDYPDLAAAYEKVQETARYVNDRAREAEQLAKVYTIQN----QITGKFE-RDLISPDRRLIQEGGLVQIYGPKSKLREVYCILFNDMLV 297          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: L8H6Q9_ACACA (RhoGEF domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6Q9_ACACA)

HSP 1 Score: 89.0 bits (219), Expect = 1.950e-17
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLREQVEKYEMSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLC---AGDSKPRRVHVSLLNDLLVVGTQ 504
            Y QY   YE  V     +     +L + +++        +TF+S+LI+P+QRIPRY+LLL+DM+ +T E HPDY  L +A++ ++ V DFVN        L KV+ ++   G       G  Q V  HR  I E  LL     A +     V V L NDLLV  ++
Sbjct:  128 YTQYTNNYESAVVMLEQSANDKDILYQFIQRCYGGRADVLTFDSYLIMPIQRIPRYNLLLEDMIAHTWEHHPDYESLCKALKMLQSVTDFVNKDIATSSALTKVLHIQNSLG-------GEVQLVAPHRYWITEGKLLSMRFGALNLFSSFVLVYLFNDLLVFSSR 286          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A7S4IAZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IAZ6_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 2.050e-17
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  133 ITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRVHVSLLNDLLVV 495
            +T  S LI P+QRI +Y LLLKD+LRNT  +HPD+  L EA+ KIE V  +VN R+ + ENL K+++++     Q  E +   Q V   RR ++E  +++    SKP+   V L NDL+V+
Sbjct:  139 LTLFSFLIKPIQRICKYPLLLKDLLRNTDAQHPDHDYLIEALSKIEEVVAYVNERKRLAENLQKILDVQ-----QQIESSEYLQLVSPSRRFVREGKMIILE-KSKPKERTVYLFNDLIVM 253          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A6B2L8T4_9EUKA (DH domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8T4_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 5.010e-17
Identity = 62/170 (36.47%), Postives = 93/170 (54.71%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLREQVEKYEMSVGSFITF--ESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRV-HVSLLNDLLVVGTQARQA 516
            Y +YV  YE  V +FL    KNK   + V      VG   T+   S LI PVQRIPRY +LL D+++NT E HPD H L +A+  I+  A FVNA++  +E+  K++E++ K G +L           S  RVI    L+LC    K R + H  +L+D++++  +  ++
Sbjct:   97 YVEYVNNYENSV-RFLATSIKNKAFSQFVTD---KVGLVDTYPLSSLLIQPVQRIPRYEMLLSDLVKNTWETHPDVHALQKALEAIKEAAQFVNAQKKKFEDSEKLLEVQNKIGVELF----------SPNRVILADNLVLC---KKERDLFHCCVLSDVILLWEEVEKS 249          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A7S4MIG5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MIG5_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 2.240e-16
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLREQVEKY-EMSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPR-RVHVSLLNDLLVVGTQ 504
            Y +Y+  Y+  V   +  R+ N    + V K  E+   +    ES LI+PVQR+PR  +LLKD+L++T + HPD+  L  A   I  +  FVN ++   EN NK+  +++K GK    +      V+ HR+ +KE +L +   D K R    V L +D+L+  T+
Sbjct:  348 YVEYINNYDSAVKLLVKLRESNSKFNKFVTKANELPELNMKQIESFLIMPVQRLPRIEMLLKDLLKHTDDNHPDHDTLERAFEGISELTAFVNEKKREAENFNKMAAVQRKMGK----KGSGHNIVQPHRKWLKEGSLDVWNVDKKKRIERSVILFSDMLLCSTE 508          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A6A5BCE0_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BCE0_NAEFO)

HSP 1 Score: 85.5 bits (210), Expect = 3.230e-16
Identity = 61/165 (36.97%), Postives = 93/165 (56.36%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQ--KNKVLREQVEKYE--MSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYG-KQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRVHVSLL-NDLLV 492
            Y QY   YE  +N    A +  KNK   E ++K +      +  TF+  LI PVQRIPRY+LLL ++L+NT   H DY  L  A  K++ VAD +N + T  EN NK+I+L++ +   Q  + +GI+  V  HR+ + E  L + + +S  ++ H   L +D+LV
Sbjct:   94 YTQYFSNYEAALNSIREADKNPKNKKFSEWLKKTDERSKEANQQTFKQLLIQPVQRIPRYNLLLSEVLKNTPRTHVDYDNLKLASEKMKEVADHLNRQITEIENRNKLIKLKEIFVLNQSGKGSGITNIVEPHRKYVFEGELSILSDNSLNKQKHYFFLFSDMLV 258          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: UPI001CFE02BC (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE02BC)

HSP 1 Score: 85.1 bits (209), Expect = 4.410e-16
Identity = 61/173 (35.26%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQ--KNKVLREQVEKYE--MSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYG-KQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRVHVSLL-NDLLVVGTQARQA 516
            Y QY   YE  +N    A +  KNK   E ++K +      +  TF+  LI PVQRIPRY+LLL ++L+NT   H DY  L  A  K++ VAD +N + T  EN NK+I+L++ +   Q  + +GI+  V  HR+ + E  L + + ++  ++ H   L +D+LV   +  +A
Sbjct:   94 YTQYFSNYEAALNSIREADKNPKNKKFSEWLKKTDERSKEANQQTFKQLLIQPVQRIPRYNLLLSEVLKNTPRTHVDYDNLKLASEKMKEVADHLNRQITEIENRNKLIKLKEIFVLNQSGKGSGITNIVEPHRKYVFEGELSILSDNALNKQKHYFFLFSDMLVCCNEVPEA 266          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A8J4PR30_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PR30_9MYCE)

HSP 1 Score: 85.1 bits (209), Expect = 4.550e-16
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLR--EQVEKYEMSVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRVHVSLLNDLLVV 495
            Y+QY R Y   +N     ++++K     E+V+     +G     E +LI PVQRIPRYSLLLKDM+ +T + HPDY  L EA +K+  VA+++N ++   EN+ K+ E+++K      +    +   +S R+ +KE   +      K   + + L ND L +
Sbjct:  708 YSQYSRNYSEAMNALNECKKQSKFKSYLEKVKHDRPEIG-LRGLEDYLIRPVQRIPRYSLLLKDMISHTWKSHPDYAQLEEAFQKMNSVAEYMNEKKKEAENMMKLAEIQEKL-----DGESSAVLAKSFRKFVKEGDFVEVLTKGKKAPIVIYLFNDSLAI 863          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: D2VHP8_NAEGR (RhoGEF domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VHP8_NAEGR)

HSP 1 Score: 85.1 bits (209), Expect = 4.610e-16
Identity = 53/167 (31.74%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLREQVEKYEM-SVGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATL--LLCAGDSKPRRVHVSLLNDLLVVGTQA 507
            Y++Y   ++   N+ L   +K +  +EQV K +  S  S +  +S+LI+P+QRIPRY LLL+D+++++   HPDY  L  A+ KI  VAD +N      E  N++I+++ ++        G    V  HR+ +K+  L  ++ A  +K R ++V L ND++++  ++
Sbjct:  511 YSRYCNNFDK-ANEVLRECKKREEFKEQVSKMDKDSRTSKLGLQSYLILPIQRIPRYRLLLQDLIKHSGPSHPDYKGLKLALEKICEVADHLNNTMKSIEATNEIIKIQSQF-------YGELNLVEPHRKFLKDGALQEIVSADFTKTRDIYVHLFNDIILLSQKS 669          
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Match: A0A8J4PYE4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYE4_9MYCE)

HSP 1 Score: 84.7 bits (208), Expect = 6.150e-16
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   16 YAQYVRGYEPFVNKFLIARQKNKVLREQVEKYEMS---VGSFITFESHLIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQTVYENLNKVIELEKKY-GKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSKPRRVHVSLLNDLLV 492
            Y QYV+ Y          R+ N      + + E S   VGS+      LI+P+QRIPRY+LLL+D+++NT  +H DY  L E+++K++ VA +VN ++   EN+ KV E++  + GK              HRR + E  L +   + K  +  + L ND+L+
Sbjct:  417 YTQYVKEYSTLFEAINNLRKNNSKFESFISEKEYSDKPVGSY------LILPIQRIPRYTLLLQDLVKNTWSDHLDYKNLTESLKKMQEVATYVNEKKREAENIAKVTEIQNNFIGK-------FDNLAEPHRRFVFEGNLSVINPNGKESQRVIFLFNDVLI 566          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118688.3846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HHM5_9EUKA1.430e-1738.27Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8H6Q9_ACACA1.950e-1735.54RhoGEF domain containing protein n=1 Tax=Acanthamo... [more]
A0A7S4IAZ6_9EUKA2.050e-1742.15Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A6B2L8T4_9EUKA5.010e-1736.47DH domain-containing protein (Fragment) n=1 Tax=Ar... [more]
A0A7S4MIG5_9EUKA2.240e-1633.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6A5BCE0_NAEFO3.230e-1636.97Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFE02BC4.410e-1635.26uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A8J4PR30_9MYCE4.550e-1633.33Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
D2VHP8_NAEGR4.610e-1631.74RhoGEF domain-containing protein n=1 Tax=Naegleria... [more]
A0A8J4PYE4_9MYCE6.150e-1633.13Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118688contigM-pyrifera_M_contig118688:18..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog5762.XP_002676373.1
KEGG koko:K05724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
Ec32 ortholog descriptionDbl homology (DH) domain
Ec32 orthologEc-04_000580.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.7537017-CDS-M-pyrifera_M_contig118688:17..5331622815705.7537017-CDS-M-pyrifera_M_contig118688:17..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118688 18..533 +
1692277530.9304194-CDS-M-pyrifera_M_contig118688:17..5331692277530.9304194-CDS-M-pyrifera_M_contig118688:17..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118688 18..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118688.3846.1prot_M-pyrifera_M_contig118688.3846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118688 18..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118688.3846.1

>prot_M-pyrifera_M_contig118688.3846.1 ID=prot_M-pyrifera_M_contig118688.3846.1|Name=mRNA_M-pyrifera_M_contig118688.3846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
ASANEYAQYVRGYEPFVNKFLIARQKNKVLREQVEKYEMSVGSFITFESH
LIVPVQRIPRYSLLLKDMLRNTHEEHPDYHLLAEAVRKIERVADFVNARQ
TVYENLNKVIELEKKYGKQLTEQTGISQFVRSHRRVIKEATLLLCAGDSK
PRRVHVSLLNDLLVVGTQARQA
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mRNA from alignment at M-pyrifera_M_contig118688:18..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118688.3846.1 ID=mRNA_M-pyrifera_M_contig118688.3846.1|Name=mRNA_M-pyrifera_M_contig118688.3846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig118688:18..533+ (Macrocystis pyrifera P11B4 male)
GCCAGTGCTAACGAGTACGCACAGTACGTGAGAGGGTACGAGCCGTTCGT GAACAAGTTCCTCATAGCGCGGCAGAAGAACAAGGTGTTGCGCGAGCAGG TGGAGAAGTACGAGATGAGCGTGGGCAGCTTCATCACCTTCGAGTCGCAC CTCATTGTGCCGGTGCAGCGCATTCCTCGCTACTCCCTGCTGCTGAAAGA TATGCTGCGCAACACGCACGAAGAGCACCCAGACTACCACCTCCTCGCAG AGGCCGTGCGCAAGATAGAGCGAGTGGCAGACTTCGTCAACGCTCGCCAG ACTGTGTACGAAAACCTCAACAAGGTGATCGAGCTGGAGAAGAAGTATGG AAAGCAGCTCACCGAGCAGACGGGTATCTCGCAATTCGTGCGCTCGCACA GACGCGTCATCAAGGAGGCCACTCTCCTGCTCTGTGCTGGCGACTCCAAG CCGAGGCGCGTGCACGTCTCGCTTCTCAACGACCTCCTCGTCGTCGGCAC CCAGGCCCGCCAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118688:18..533+

>mRNA_M-pyrifera_M_contig118688.3846.1 ID=mRNA_M-pyrifera_M_contig118688.3846.1|Name=mRNA_M-pyrifera_M_contig118688.3846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig118688:18..533+ (Macrocystis pyrifera P11B4 male)
GCCAGTGCTAACGAGTACGCACAGTACGTGAGAGGGTACGAGCCGTTCGT
GAACAAGTTCCTCATAGCGCGGCAGAAGAACAAGGTGTTGCGCGAGCAGG
TGGAGAAGTACGAGATGAGCGTGGGCAGCTTCATCACCTTCGAGTCGCAC
CTCATTGTGCCGGTGCAGCGCATTCCTCGCTACTCCCTGCTGCTGAAAGA
TATGCTGCGCAACACGCACGAAGAGCACCCAGACTACCACCTCCTCGCAG
AGGCCGTGCGCAAGATAGAGCGAGTGGCAGACTTCGTCAACGCTCGCCAG
ACTGTGTACGAAAACCTCAACAAGGTGATCGAGCTGGAGAAGAAGTATGG
AAAGCAGCTCACCGAGCAGACGGGTATCTCGCAATTCGTGCGCTCGCACA
GACGCGTCATCAAGGAGGCCACTCTCCTGCTCTGTGCTGGCGACTCCAAG
CCGAGGCGCGTGCACGTCTCGCTTCTCAACGACCTCCTCGTCGTCGGCAC
CCAGGCCCGCCAGGCCGCCAGTGCTAACGAGTACGCACAGTACGTGAGAG
GGTACGAGCCGTTCGTGAACAAGTTCCTCATAGCGCGGCAGAAGAACAAG
GTGTTGCGCGAGCAGGTGGAGAAGTACGAGATGAGCGTGGGCAGCTTCAT
CACCTTCGAGTCGCACCTCATTGTGCCGGTGCAGCGCATTCCTCGCTACT
CCCTGCTGCTGAAAGATATGCTGCGCAACACGCACGAAGAGCACCCAGAC
TACCACCTCCTCGCAGAGGCCGTGCGCAAGATAGAGCGAGTGGCAGACTT
CGTCAACGCTCGCCAGACTGTGTACGAAAACCTCAACAAGGTGATCGAGC
TGGAGAAGAAGTATGGAAAGCAGCTCACCGAGCAGACGGGTATCTCGCAA
TTCGTGCGCTCGCACAGACGCGTCATCAAGGAGGCCACTCTCCTGCTCTG
TGCTGGCGACTCCAAGCCGAGGCGCGTGCACGTCTCGCTTCTCAACGACC
TCCTCGTCGTCGGCACCCAGGCCCGCCAGGCC
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