mRNA_M-pyrifera_M_contig1186.3841.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1186.3841.1
Unique NamemRNA_M-pyrifera_M_contig1186.3841.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1186.3841.1 vs. uniprot
Match: D8LDB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.890e-23
Identity = 76/146 (52.05%), Postives = 89/146 (60.96%), Query Frame = 1 
Query:    1 QAVGRIAAAEVSLQTANQILDETKADVRNLRGELNNAQTREREVAEATEAERRLARKNIAKLEGVIERADREHALYRERTEGRLERLRLAVE-ETRESASQAALEAETRQNLKVEALTASLAQATADMRLDLEDKLFSANKALRLA 435
            QA  R AA E +L  A Q LD+ + +V  LR +L  A  RERE AEA E ERR+A + IA+LE  I  + RE AL RERTEGRLE+LRLA E E  E  SQAAL     Q    +   A L QA  D R D E KL SA++ALRLA
Sbjct: 1723 QAAERFAAQEATLHGAKQSLDQAREEVDTLRCQLAQALARERETAEAVEDERRVAGQRIAELEDAIAESKREGALLRERTEGRLEKLRLAAEAEEEEKDSQAALAELLHQKSISDGFAAELTQAAVDARADFEQKLNSAHEALRLA 1868
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BLAST of mRNA_M-pyrifera_M_contig1186.3841.1 vs. uniprot
Match: A0A6H5L2K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.050e-22
Identity = 74/146 (50.68%), Postives = 88/146 (60.27%), Query Frame = 1 
Query:    1 QAVGRIAAAEVSLQTANQILDETKADVRNLRGELNNAQTREREVAEATEAERRLARKNIAKLEGVIERADREHALYRERTEGRLERLRLAVEET-RESASQAALEAETRQNLKVEALTASLAQATADMRLDLEDKLFSANKALRLA 435
            QA  R AA E +L  A Q LD+ + +V  LR +L  A  RER  AEA E ERR+AR+ IA+LE  I  + RE  L RERTEGRLE+LRLA EE   E+ SQAA      Q    +   A L +A  D R D E KL SAN+ALRLA
Sbjct: 1789 QAAERFAAQEATLHGAKQSLDQAREEVDTLRRQLAQALARERVTAEAVEDERRVARQKIAELEDAIAESKREGDLLRERTEGRLEKLRLAAEEEXEENDSQAAFAELLHQKSISDGFAAELTRAAVDARADFEQKLNSANEALRLA 1934
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1186.3841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB4_ECTSI6.890e-2352.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K2_9PHAE6.050e-2250.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1186contigM-pyrifera_M_contig1186:25744..27018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.4599073-CDS-M-pyrifera_M_contig1186:25743..260431622815705.4599073-CDS-M-pyrifera_M_contig1186:25743..26043Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1186 25744..26043 +
1692277530.7863345-CDS-M-pyrifera_M_contig1186:25743..260431692277530.7863345-CDS-M-pyrifera_M_contig1186:25743..26043Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1186 25744..26043 +
1622815705.4706266-CDS-M-pyrifera_M_contig1186:26883..270181622815705.4706266-CDS-M-pyrifera_M_contig1186:26883..27018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1186 26884..27018 +
1692277530.7972767-CDS-M-pyrifera_M_contig1186:26883..270181692277530.7972767-CDS-M-pyrifera_M_contig1186:26883..27018Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1186 26884..27018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1186.3841.1prot_M-pyrifera_M_contig1186.3841.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1186 25744..27018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1186.3841.1

>prot_M-pyrifera_M_contig1186.3841.1 ID=prot_M-pyrifera_M_contig1186.3841.1|Name=mRNA_M-pyrifera_M_contig1186.3841.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
QAVGRIAAAEVSLQTANQILDETKADVRNLRGELNNAQTREREVAEATEA
ERRLARKNIAKLEGVIERADREHALYRERTEGRLERLRLAVEETRESASQ
AALEAETRQNLKVEALTASLAQATADMRLDLEDKLFSANKALRLA
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mRNA from alignment at M-pyrifera_M_contig1186:25744..27018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1186.3841.1 ID=mRNA_M-pyrifera_M_contig1186.3841.1|Name=mRNA_M-pyrifera_M_contig1186.3841.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at M-pyrifera_M_contig1186:25744..27018+ (Macrocystis pyrifera P11B4 male)
CAGGCTGTGGGAAGGATTGCAGCTGCGGAGGTGTCACTTCAGACAGCCAA
TCAAATATTAGACGAGACAAAGGCCGACGTCAGAAATTTGCGCGGCGAGC
TAAACAATGCTCAAACCCGAGAGCGGGAAGTGGCGGAAGCCACGGAAGCG
GAGAGACGGTTGGCGAGAAAAAACATCGCCAAGCTGGAAGGTGTAATCGA
GAGAGCGGATCGTGAACACGCCTTGTACAGAGAGCGAACGGAGGGGAGGC
TGGAGCGACTGAGGCTCGCAGTCGAGGAGACGCGGGAGAGCGCCTCCCAG
GTCTGTGTGCGCGTCTGCTTTACAGTAGGTCGATGCTGTGTTCGGTGCCG
GATTTAGGTATAACACTGCTTGTACCGAATCGACAGGAAAAAAACGTATT
GCCCGTTTCCAAATTATAAGAGGTGTTGTTTGCCAGAGTGCCAGATTAGG
TCGTGATTGCGTTCGGTGGCGAACTCTGCGTCAGGTGTCTGATTAGGGTG
CTAGTACCGAATCCTCCAAAACCTTTTTTTAGGTGTAGAGGTTTCCCGTT
TTTTCACTTGTAAGAGGTTTTGTGTGCCTGCTTTATGTCGGTGTTGTGTT
CGGTGTCCGAATATGGTACATTAGTTGTACCGAATCGCCAAAAACATTTT
TAGGCGCAGAGATTGCCCGTTTTCGACTTGTGTGACGTACACGCATAAGA
AATAAGAAAGCCTTCCCTGTCCAGCAGTTTTCACGAACTTAACTTCGACG
TGTGAACACCATCTCTTGAAAAATACCTTGTACTTATATTGTTCCTATCC
GACTTCGTGCGGACGTTTCGTTTTTTGCTGTTGGTCGATACGCTGCGCAA
ATGTTGTGTAGGGTACGGAGCCTACTCAGGTCTTTTCCAGCGTCAGAGTT
GTTACGCGACGTCATCAGGGTATACAATACGTACACCTTGCGGGTGGTGG
TGAATGCCAGAGTGGCGATGCTGCTAACCTCCCCTGGGTTGCTTTCATGA
CACGACACCGGAGGCAAATCTCTTAACCAGCCCCACTCTAACTTACGCCA
TTTCCAACCCCTGTTTAGCGGTTCATCCGGTGACATCGGCGTACCCACGT
GTTCTGACCGACTCATTCACTCCCGACCGCATTCAAAAAGGCTGCTCTTG
AGGCAGAGACGCGGCAGAATCTCAAGGTAGAAGCTCTTACGGCGAGCCTT
GCGCAAGCTACAGCGGACATGCGCTTAGACCTGGAAGACAAGCTGTTCTC
CGCTAACAAAGCGTTGAGGTTGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1186:25744..27018+

>mRNA_M-pyrifera_M_contig1186.3841.1 ID=mRNA_M-pyrifera_M_contig1186.3841.1|Name=mRNA_M-pyrifera_M_contig1186.3841.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig1186:25744..27018+ (Macrocystis pyrifera P11B4 male)
CAGGCTGTGGGAAGGATTGCAGCTGCGGAGGTGTCACTTCAGACAGCCAA
TCAAATATTAGACGAGACAAAGGCCGACGTCAGAAATTTGCGCGGCGAGC
TAAACAATGCTCAAACCCGAGAGCGGGAAGTGGCGGAAGCCACGGAAGCG
GAGAGACGGTTGGCGAGAAAAAACATCGCCAAGCTGGAAGGTGTAATCGA
GAGAGCGGATCGTGAACACGCCTTGTACAGAGAGCGAACGGAGGGGAGGC
TGGAGCGACTGAGGCTCGCAGTCGAGGAGACGCGGGAGAGCGCCTCCCAG
CAGGCTGTGGGAAGGATTGCAGCTGCGGAGGTGTCACTTCAGACAGCCAA
TCAAATATTAGACGAGACAAAGGCCGACGTCAGAAATTTGCGCGGCGAGC
TAAACAATGCTCAAACCCGAGAGCGGGAAGTGGCGGAAGCCACGGAAGCG
GAGAGACGGTTGGCGAGAAAAAACATCGCCAAGCTGGAAGGTGTAATCGA
GAGAGCGGATCGTGAACACGCCTTGTACAGAGAGCGAACGGAGGGGAGGC
TGGAGCGACTGAGGCTCGCAGTCGAGGAGACGCGGGAGAGCGCCTCCCAG
GCTGCTCTTGAGGCAGAGACGCGGCAGAATCTCAAGGTAGAAGCTCTTAC
GGCGAGCCTTGCGCAAGCTACAGCGGACATGCGCTTAGACCTGGAAGACA
AGCTGTTCTCCGCTAACAAAGCGTTGAGGTTGGCGGCTGCTCTTGAGGCA
GAGACGCGGCAGAATCTCAAGGTAGAAGCTCTTACGGCGAGCCTTGCGCA
AGCTACAGCGGACATGCGCTTAGACCTGGAAGACAAGCTGTTCTCCGCTA
ACAAAGCGTTGAGGTTGGCG
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