mRNA_M-pyrifera_M_contig118591.3840.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A6B3N042_9CYAN (PEP-CTERM sorting domain-containing protein n=1 Tax=Moorena sp. SIO4A1 TaxID=2607835 RepID=A0A6B3N042_9CYAN) HSP 1 Score: 73.9 bits (180), Expect = 4.790e-13 Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLT-DAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLFWLPLLL 342
LG + GG+ S+A AV+G+GS++VG ++ + F W + GM+++ L D D++ WT L D+S+DG+ +VG+ NP+G EG++A + +T + P+ L LL
Sbjct: 279 LGDLAGGNFFSVALAVSGDGSIIVGQSESSRGEEPFIWDSLNGMRSLIQLLANDFSLDVSDWTNLTVADISADGSTIVGVGNNPEGALEGWVANLDSEQTQVPEATPVLGLFSLL 393
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: UPI001FD2D59D (autotransporter domain-containing protein n=1 Tax=Rhizobium cremeum TaxID=2813827 RepID=UPI001FD2D59D) HSP 1 Score: 68.6 bits (166), Expect = 4.320e-11 Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1
Query: 19 GSVTSIARAVNGNGSVVVGWTQIN--HIGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIA---ENPDGQTEGFIARV 282
G +S A AVN +GS++VG + + ++ AFRWT +TGM V+ WL AG D+ G L EAT VS +G+V+VG+ +NP G++ FIARV
Sbjct: 288 GGTSSEALAVNKDGSIIVGTSDDDETYLEHAFRWTRETGMIYVSDWLLQAGVDVGGHILSEATGVSDNGSVIVGMMRDDDNPSGESP-FIARV 379
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A1D9FVX0_9CYAN (Uncharacterized protein n=4 Tax=Moorena TaxID=1155738 RepID=A0A1D9FVX0_9CYAN) HSP 1 Score: 67.0 bits (162), Expect = 1.370e-10 Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAG-------WLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLF 324
L +PGG S A V+G+GS+VVG ++ FR V G + D G D+TGWT L A D+S D + V+G NPDG TEG++AR+ P+ ++ +F
Sbjct: 287 LSDLPGGGFFSRAFGVSGDGSIVVGQSE------GFRGXXXXXXDRVNGIRPLLDVLIDDLGLDLTGWTNLVAQDISDDNSTVIGFGINPDGNTEGWVARLTPASATVPERSSVF 395
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A2C6DNQ5_9GAMM (Autotransporter domain-containing protein n=2 Tax=Budvicia aquatica TaxID=82979 RepID=A0A2C6DNQ5_9GAMM) HSP 1 Score: 65.5 bits (158), Expect = 5.220e-10 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1 LGVVPGGSV-TSIARAVNGNGSVVVGWTQINH-IGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLFWLP 333
LG + G ++ S ARA++ +GS +VG + + A+ W + GM ++ +L G ++ W L +A+ +S +G VVVG+ NPDG EG++AR+ ET + PP+ P
Sbjct: 333 LGFLGGNTIHVSQARALSADGSTIVGLSSTDQDTAAAYIWREEFGMISIQDFLASNGINLDSWALEDASSISGNGEVVVGMGTNPDGYAEGWMARIPKPETPIS--PPIITDP 443
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A7Y3XGS1_9BACT (PEP-CTERM sorting domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3XGS1_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9 Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 1 LGVVPGGSVTSIARAVNGNGSVVVGWT-QINHIGTAFRWTAKTGMQTVAGWLT-DAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPL 321
LG++ + + G+GSVVVG + Q + + W A GM+ +A L D G D+TGW L+E DVS DG VG NP+G TEG+IAR+ P++T GP L
Sbjct: 270 LGLLYPSDEMATVTGMTGDGSVVVGVSGQFSGPRFPYIWDATNGMRNLAEVLVNDYGLDLTGWILVEVLDVSLDGTTFVGYGTNPEGVTEGWIARI-PADT----GPQL 373
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A5C6CH37_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CH37_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 1.410e-8 Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 31 SIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTD---AGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSL 303
S A +GS+VVG + F W G++ + LT+ G +TGW L+EAT +S DG V++G NPDG EG+IAR+ T+L
Sbjct: 263 SSATDTTADGSIVVGIASMGADSDPFIWDDSNGIRNLVDVLTNDFGLGIALTGWDLIEATAISDDGRVIIGNGINPDGNFEGWIARIPEPGTAL 356
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A369UPP9_9GAMM (Autotransporter domain-containing protein n=2 Tax=Dyella tabacisoli TaxID=2282381 RepID=A0A369UPP9_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 1.340e-7 Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 10 VPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTDAGHDI-TGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVP 288
VP G ++S ++ +G+VVVG + AFRW+A TGMQ+VA WL +A + + TL A + DG V+VG + + EG++ARV P
Sbjct: 94 VPAGFLSSRPVGISADGTVVVGQSVSLSAEQAFRWSAVTGMQSVAAWLANASVSVPSNVTLTSANAANRDGTVLVGDSAVVNSNGEGWLARVGP 187
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A083ZQ54_RHIRD (Extracellular serine protease n=14 Tax=Agrobacterium TaxID=357 RepID=A0A083ZQ54_RHIRD) HSP 1 Score: 58.2 bits (139), Expect = 1.920e-7 Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVV 285
L V+P GS SI A++ +GSV+VG Q FRWT GM +V WL + G I ATDVS+DGN+VVG N +IAR+V
Sbjct: 337 LEVIPNGS-GSIPYAMSADGSVIVGNWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTSTATDVSADGNIVVGRTRN----NTSYIARIV 426
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A1R3TUK8_9HYPH (Putative extracellular repeat, HAF family n=1 Tax=Agrobacterium sp. DSM 25558 TaxID=1907665 RepID=A0A1R3TUK8_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 1.670e-6 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 31 SIARAVNGNGSVVVGWTQINHIGT-AFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARV 282
S+ARAVN +GSVVVG +Q + T FRWT TGM++V WL AG +++ A VS +GNVV G ++ + + ARV
Sbjct: 355 SLARAVNADGSVVVGDSQDSSSTTHGFRWTDATGMKSVDDWLRSAGVNLSEDVTRTAEAVSDNGNVVAGYTQD----NQFYYARV 435
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A8I1M1F2_9HYPH (Autotransporter domain-containing protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A8I1M1F2_9HYPH) HSP 1 Score: 54.3 bits (129), Expect = 4.250e-6 Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 31 SIARAVNGNGSVVVGWTQINHIGT-AFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARV 282
S ARAVN +GSVVVG +Q + T FRWT TGM++V WL AG +++ A VS +GNVV G ++ + + ARV
Sbjct: 353 SYARAVNADGSVVVGDSQDSSSTTHGFRWTDATGMKSVDDWLRSAGVNLSEDVTRTAEAVSDNGNVVAGYTQD----NQFYYARV 433 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118591.3840.1 >prot_M-pyrifera_M_contig118591.3840.1 ID=prot_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWback to top mRNA from alignment at M-pyrifera_M_contig118591:198..548- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118591.3840.1 ID=mRNA_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig118591:198..548- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118591:198..548- >mRNA_M-pyrifera_M_contig118591.3840.1 ID=mRNA_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig118591:198..548- (Macrocystis pyrifera P11B4 male)back to top |