mRNA_M-pyrifera_M_contig118591.3840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118591.3840.1
Unique NamemRNA_M-pyrifera_M_contig118591.3840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A6B3N042_9CYAN (PEP-CTERM sorting domain-containing protein n=1 Tax=Moorena sp. SIO4A1 TaxID=2607835 RepID=A0A6B3N042_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 4.790e-13
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLT-DAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLFWLPLLL 342
            LG + GG+  S+A AV+G+GS++VG ++ +     F W +  GM+++   L  D   D++ WT L   D+S+DG+ +VG+  NP+G  EG++A +   +T +    P+  L  LL
Sbjct:  279 LGDLAGGNFFSVALAVSGDGSIIVGQSESSRGEEPFIWDSLNGMRSLIQLLANDFSLDVSDWTNLTVADISADGSTIVGVGNNPEGALEGWVANLDSEQTQVPEATPVLGLFSLL 393          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: UPI001FD2D59D (autotransporter domain-containing protein n=1 Tax=Rhizobium cremeum TaxID=2813827 RepID=UPI001FD2D59D)

HSP 1 Score: 68.6 bits (166), Expect = 4.320e-11
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   19 GSVTSIARAVNGNGSVVVGWTQIN--HIGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIA---ENPDGQTEGFIARV 282
            G  +S A AVN +GS++VG +  +  ++  AFRWT +TGM  V+ WL  AG D+ G  L EAT VS +G+V+VG+    +NP G++  FIARV
Sbjct:  288 GGTSSEALAVNKDGSIIVGTSDDDETYLEHAFRWTRETGMIYVSDWLLQAGVDVGGHILSEATGVSDNGSVIVGMMRDDDNPSGESP-FIARV 379          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A1D9FVX0_9CYAN (Uncharacterized protein n=4 Tax=Moorena TaxID=1155738 RepID=A0A1D9FVX0_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.370e-10
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAG-------WLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLF 324
            L  +PGG   S A  V+G+GS+VVG ++       FR         V G        + D G D+TGWT L A D+S D + V+G   NPDG TEG++AR+ P+  ++     +F
Sbjct:  287 LSDLPGGGFFSRAFGVSGDGSIVVGQSE------GFRGXXXXXXDRVNGIRPLLDVLIDDLGLDLTGWTNLVAQDISDDNSTVIGFGINPDGNTEGWVARLTPASATVPERSSVF 395          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A2C6DNQ5_9GAMM (Autotransporter domain-containing protein n=2 Tax=Budvicia aquatica TaxID=82979 RepID=A0A2C6DNQ5_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 5.220e-10
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 LGVVPGGSV-TSIARAVNGNGSVVVGWTQINH-IGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPLFWLP 333
            LG + G ++  S ARA++ +GS +VG +  +     A+ W  + GM ++  +L   G ++  W L +A+ +S +G VVVG+  NPDG  EG++AR+   ET +   PP+   P
Sbjct:  333 LGFLGGNTIHVSQARALSADGSTIVGLSSTDQDTAAAYIWREEFGMISIQDFLASNGINLDSWALEDASSISGNGEVVVGMGTNPDGYAEGWMARIPKPETPIS--PPIITDP 443          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A7Y3XGS1_9BACT (PEP-CTERM sorting domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3XGS1_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 LGVVPGGSVTSIARAVNGNGSVVVGWT-QINHIGTAFRWTAKTGMQTVAGWLT-DAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSLESGPPL 321
            LG++      +    + G+GSVVVG + Q +     + W A  GM+ +A  L  D G D+TGW L+E  DVS DG   VG   NP+G TEG+IAR+ P++T    GP L
Sbjct:  270 LGLLYPSDEMATVTGMTGDGSVVVGVSGQFSGPRFPYIWDATNGMRNLAEVLVNDYGLDLTGWILVEVLDVSLDGTTFVGYGTNPEGVTEGWIARI-PADT----GPQL 373          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A5C6CH37_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CH37_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.410e-8
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   31 SIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTD---AGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETSL 303
            S A     +GS+VVG   +      F W    G++ +   LT+    G  +TGW L+EAT +S DG V++G   NPDG  EG+IAR+    T+L
Sbjct:  263 SSATDTTADGSIVVGIASMGADSDPFIWDDSNGIRNLVDVLTNDFGLGIALTGWDLIEATAISDDGRVIIGNGINPDGNFEGWIARIPEPGTAL 356          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A369UPP9_9GAMM (Autotransporter domain-containing protein n=2 Tax=Dyella tabacisoli TaxID=2282381 RepID=A0A369UPP9_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.340e-7
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   10 VPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTDAGHDI-TGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVP 288
            VP G ++S    ++ +G+VVVG +       AFRW+A TGMQ+VA WL +A   + +  TL  A   + DG V+VG +   +   EG++ARV P
Sbjct:   94 VPAGFLSSRPVGISADGTVVVGQSVSLSAEQAFRWSAVTGMQSVAAWLANASVSVPSNVTLTSANAANRDGTVLVGDSAVVNSNGEGWLARVGP 187          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A083ZQ54_RHIRD (Extracellular serine protease n=14 Tax=Agrobacterium TaxID=357 RepID=A0A083ZQ54_RHIRD)

HSP 1 Score: 58.2 bits (139), Expect = 1.920e-7
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    1 LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVV 285
            L V+P GS  SI  A++ +GSV+VG  Q       FRWT   GM +V  WL + G  I       ATDVS+DGN+VVG   N       +IAR+V
Sbjct:  337 LEVIPNGS-GSIPYAMSADGSVIVGNWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTSTATDVSADGNIVVGRTRN----NTSYIARIV 426          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A1R3TUK8_9HYPH (Putative extracellular repeat, HAF family n=1 Tax=Agrobacterium sp. DSM 25558 TaxID=1907665 RepID=A0A1R3TUK8_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 1.670e-6
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   31 SIARAVNGNGSVVVGWTQINHIGT-AFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARV 282
            S+ARAVN +GSVVVG +Q +   T  FRWT  TGM++V  WL  AG +++      A  VS +GNVV G  ++     + + ARV
Sbjct:  355 SLARAVNADGSVVVGDSQDSSSTTHGFRWTDATGMKSVDDWLRSAGVNLSEDVTRTAEAVSDNGNVVAGYTQD----NQFYYARV 435          
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Match: A0A8I1M1F2_9HYPH (Autotransporter domain-containing protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=A0A8I1M1F2_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 4.250e-6
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   31 SIARAVNGNGSVVVGWTQINHIGT-AFRWTAKTGMQTVAGWLTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARV 282
            S ARAVN +GSVVVG +Q +   T  FRWT  TGM++V  WL  AG +++      A  VS +GNVV G  ++     + + ARV
Sbjct:  353 SYARAVNADGSVVVGDSQDSSSTTHGFRWTDATGMKSVDDWLRSAGVNLSEDVTRTAEAVSDNGNVVAGYTQD----NQFYYARV 433          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118591.3840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6B3N042_9CYAN4.790e-1334.78PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
UPI001FD2D59D4.320e-1146.24autotransporter domain-containing protein n=1 Tax=... [more]
A0A1D9FVX0_9CYAN1.370e-1036.52Uncharacterized protein n=4 Tax=Moorena TaxID=1155... [more]
A0A2C6DNQ5_9GAMM5.220e-1034.51Autotransporter domain-containing protein n=2 Tax=... [more]
A0A7Y3XGS1_9BACT1.250e-941.28PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A5C6CH37_9BACT1.410e-838.30Uncharacterized protein n=1 Tax=Bythopirellula pol... [more]
A0A369UPP9_9GAMM1.340e-739.36Autotransporter domain-containing protein n=2 Tax=... [more]
A0A083ZQ54_RHIRD1.920e-743.16Extracellular serine protease n=14 Tax=Agrobacteri... [more]
A0A1R3TUK8_9HYPH1.670e-643.53Putative extracellular repeat, HAF family n=1 Tax=... [more]
A0A8I1M1F2_9HYPH4.250e-643.53Autotransporter domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118591contigM-pyrifera_M_contig118591:198..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog1211115.ALIQ01000235_gene2565
Preferred nameCP_1073
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HAF family
EggNOG OGs1R9G5@1224,2UBH9@28211,COG5563@1,COG5563@2
COG Functional cat.S
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.4238186-CDS-M-pyrifera_M_contig118591:197..5481622815705.4238186-CDS-M-pyrifera_M_contig118591:197..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118591 198..548 -
1692277530.7750957-CDS-M-pyrifera_M_contig118591:197..5481692277530.7750957-CDS-M-pyrifera_M_contig118591:197..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118591 198..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118591.3840.1prot_M-pyrifera_M_contig118591.3840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118591 198..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118591.3840.1

>prot_M-pyrifera_M_contig118591.3840.1 ID=prot_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
LGVVPGGSVTSIARAVNGNGSVVVGWTQINHIGTAFRWTAKTGMQTVAGW
LTDAGHDITGWTLLEATDVSSDGNVVVGIAENPDGQTEGFIARVVPSETS
LESGPPLFWLPLLLED*
back to top

mRNA from alignment at M-pyrifera_M_contig118591:198..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118591.3840.1 ID=mRNA_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig118591:198..548- (Macrocystis pyrifera P11B4 male)
TTAGGGGTAGTGCCGGGAGGCAGTGTCACGAGCATTGCGCGCGCAGTAAA CGGCAACGGCAGCGTTGTCGTCGGATGGACTCAGATAAATCATATTGGTA CAGCATTTCGTTGGACCGCAAAAACCGGCATGCAAACCGTAGCCGGTTGG TTAACCGATGCGGGGCACGATATTACCGGGTGGACTTTGCTGGAGGCCAC GGATGTCAGCAGTGACGGCAATGTAGTGGTTGGAATTGCCGAGAATCCGG ATGGACAAACTGAAGGATTTATCGCGCGGGTAGTGCCGTCGGAAACGAGT CTCGAATCAGGACCACCACTATTTTGGTTACCGTTATTGCTGGAAGATTG A
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118591:198..548-

>mRNA_M-pyrifera_M_contig118591.3840.1 ID=mRNA_M-pyrifera_M_contig118591.3840.1|Name=mRNA_M-pyrifera_M_contig118591.3840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig118591:198..548- (Macrocystis pyrifera P11B4 male)
TTAGGGGTAGTGCCGGGAGGCAGTGTCACGAGCATTGCGCGCGCAGTAAA
CGGCAACGGCAGCGTTGTCGTCGGATGGACTCAGATAAATCATATTGGTA
CAGCATTTCGTTGGACCGCAAAAACCGGCATGCAAACCGTAGCCGGTTGG
TTAACCGATGCGGGGCACGATATTACCGGGTGGACTTTGCTGGAGGCCAC
GGATGTCAGCAGTGACGGCAATGTAGTGGTTGGAATTGCCGAGAATCCGG
ATGGACAAACTGAAGGATTTATCGCGCGGGTAGTGCCGTCGGAAACGAGT
CTCGAATCAGGACCACCACTATTTTGGTTACCGTTATTGCTGGAAGATTG
ATTAGGGGTAGTGCCGGGAGGCAGTGTCACGAGCATTGCGCGCGCAGTAA
ACGGCAACGGCAGCGTTGTCGTCGGATGGACTCAGATAAATCATATTGGT
ACAGCATTTCGTTGGACCGCAAAAACCGGCATGCAAACCGTAGCCGGTTG
GTTAACCGATGCGGGGCACGATATTACCGGGTGGACTTTGCTGGAGGCCA
CGGATGTCAGCAGTGACGGCAATGTAGTGGTTGGAATTGCCGAGAATCCG
GATGGACAAACTGAAGGATTTATCGCGCGGGTAGTGCCGTCGGAAACGAG
TCTCGAATCAGGACCACCACTATTTTGGTTACCGTTATTGCTGGAAGATT
GA
back to top