mRNA_M-pyrifera_M_contig118589.3839.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118589.3839.1
Unique NamemRNA_M-pyrifera_M_contig118589.3839.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A7K2BS80_9ACTN (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BS80_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 3.080e-61
Identity = 96/135 (71.11%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   22 IPSPTTRPNNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            + S  T+   +AA AV  SK YGSGDT VRALD IDV F  G FTAIMGPSGSGKSTLMHC+AGLD VTSG++++GDTDL TLSER+LTLLRRD VGF+FQA+NLVPTL+A+ENITLPMDLAG K D AW+++V+
Sbjct:   26 VTSSPTQALAVAARAVAASKIYGSGDTEVRALDAIDVAFDQGRFTAIMGPSGSGKSTLMHCMAGLDTVTSGQVIIGDTDLTTLSERDLTLLRRDSVGFVFQAYNLVPTLTAIENITLPMDLAGAKGDTAWVDEVV 160          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A2D8LV77_9ACTN (Peptide ABC transporter ATP-binding protein n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LV77_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 1.340e-60
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1
Query:   52 LAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            LAA AVG +K YGSGDT VRALD +DV F  G FTAIMGPSGSGKSTLMHC+AGLD++T GE+ +G+T L+TLSE++LTLLRRD VGFIFQAFNLVPTLSA+ENITLPMDLAG  PDQ W++QVI
Sbjct:    9 LAARAVGAAKIYGSGDTEVRALDGVDVTFNRGEFTAIMGPSGSGKSTLMHCMAGLDDLTDGEVFIGETALSTLSEKDLTLLRRDNVGFIFQAFNLVPTLSAIENITLPMDLAGKTPDQGWVDQVI 133          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A6B0ZG18_9ACTN (ABC transporter ATP-binding protein n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZG18_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 1.500e-60
Identity = 97/140 (69.29%), Postives = 116/140 (82.86%), Query Frame = 1
Query:    7 VLDPPIPSPTTRPNNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            +L  P+ S  T+   +AA AV  SK YGSGDT VRALD IDV F  G FTAIMGPSGSGKSTLMHC+AGLD VTSG++++GDTDL TLSE++LTLLRRD VGF+FQA+NLVPTL+A+ENITLPMDLAG K D AW+++V+
Sbjct:   21 LLGEPVTSSPTQALAVAAQAVAASKIYGSGDTEVRALDAIDVAFEQGRFTAIMGPSGSGKSTLMHCMAGLDTVTSGQVIIGDTDLTTLSEKDLTLLRRDNVGFVFQAYNLVPTLTAIENITLPMDLAGEKGDTAWVDEVV 160          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: UPI0018F5C5A8 (ABC transporter ATP-binding protein n=2 Tax=Antrihabitans TaxID=2799491 RepID=UPI0018F5C5A8)

HSP 1 Score: 195 bits (496), Expect = 2.990e-60
Identity = 91/125 (72.80%), Postives = 110/125 (88.00%), Query Frame = 1
Query:   52 LAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            +AA A+ V KTYGSGDT VRALD +  DFV G FTAIMGPSGSGKSTLMHCLAGLDN TSG +L+GDT+L +LS++++T+LRRDR+GF+FQAFNLVPTL+ALENITLP+D+AG KPD+ WL+ VI
Sbjct:   23 IAARAIDVVKTYGSGDTQVRALDGVSADFVRGEFTAIMGPSGSGKSTLMHCLAGLDNATSGSVLIGDTELMSLSDKQMTMLRRDRIGFVFQAFNLVPTLTALENITLPLDIAGRKPDKEWLDTVI 147          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A662E956_9ACTN (ABC transporter ATP-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662E956_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 9.490e-60
Identity = 95/140 (67.86%), Postives = 116/140 (82.86%), Query Frame = 1
Query:    7 VLDPPIPSPTTRPNNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            +LDPP  +P T  N +AA A G +KTYG GDT V ALDN+DVDF AG FTAIMGPSGSGKSTLMHC+AGLD+++SG   +GD D+A  SE++LT LRRDR+GF+FQAFNLVPTL+A+ENITLPMDLAG +PD+ WL+ V+
Sbjct:    4 LLDPP--NPQTE-NAIAASARGATKTYGMGDTEVLALDNVDVDFAAGQFTAIMGPSGSGKSTLMHCMAGLDSLSSGSAFIGDIDIAAASEKQLTRLRRDRLGFVFQAFNLVPTLTAIENITLPMDLAGNRPDKEWLDNVV 140          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A5Q2RR31_9ACTN (ATP-binding cassette domain-containing protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RR31_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 1.070e-59
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 1
Query:   25 PSPTTRP-NNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            P+P   P    AA AV   KTYGSGDT VRALD IDV+F    FTAIMGPSGSGKSTLMHCLAGLD +TSG++ +GDTDL TLSE+ LT LRRD+VGF+FQAFNL+PTLSA+ENITLPM LAG KPDQ W++ VI
Sbjct:    8 PTPAAGPARRAAARAVAARKTYGSGDTEVRALDGIDVEFERARFTAIMGPSGSGKSTLMHCLAGLDTLTSGQVFIGDTDLTTLSEKHLTTLRRDKVGFVFQAFNLIPTLSAIENITLPMSLAGRKPDQDWVDDVI 142          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A7X6ASF0_9ACTN (ATP-binding cassette domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ASF0_9ACTN)

HSP 1 Score: 193 bits (491), Expect = 1.090e-59
Identity = 95/132 (71.97%), Postives = 111/132 (84.09%), Query Frame = 1
Query:   31 PTTRPNNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            PTT    +AA AV  +K YG GDT VRALD ID +F  G FTAIMGPSGSGKSTLMHCLAGLD +TSG++ +GD DL+ LSER+LTLLRRD+VGF+FQAFNLVPTLSA+ENITLP DLAG++PD AWL++VI
Sbjct:    6 PTTA---IAARAVAATKIYGEGDTEVRALDGIDAEFARGRFTAIMGPSGSGKSTLMHCLAGLDTLTSGKVFIGDVDLSLLSERDLTLLRRDKVGFVFQAFNLVPTLSAIENITLPTDLAGLEPDGAWLDEVI 134          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: A0A6I2ZXA1_9ACTN (ATP-binding cassette domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A6I2ZXA1_9ACTN)

HSP 1 Score: 191 bits (484), Expect = 1.220e-58
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1
Query:   55 AAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            AAGA+  SK YG  D+ VRALD++ VDF  G FTAIMGPSGSGKSTLMHCLAGLD +TSG +L+GDTDLA L +++LT LRR++VGFIFQA+NL+PTLSALENITLPMDL GVKPDQ WL+ VI
Sbjct:    9 AAGAINASKIYGKDDSEVRALDDVTVDFALGQFTAIMGPSGSGKSTLMHCLAGLDALTSGRVLIGDTDLAQLDDKQLTSLRREKVGFIFQAYNLIPTLSALENITLPMDLGGVKPDQEWLDTVI 132          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: UPI0018F6606F (ABC transporter ATP-binding protein n=1 Tax=Antrihabitans sp. YC2-6 TaxID=2799498 RepID=UPI0018F6606F)

HSP 1 Score: 190 bits (483), Expect = 2.190e-58
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   46 NNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            + LAA A+ V KTYGSGDT VRALD +  DFV G FTAIMGPSGSGKSTLMHCLAGLD  TSG +L+GDT+L TLS++++T LRRDRVGF+FQAFNLVPTL+ALENITLP+D+AG K D  WL+ V+
Sbjct:   13 HTLAARAIDVVKTYGSGDTQVRALDGVSADFVKGEFTAIMGPSGSGKSTLMHCLAGLDTATSGSVLIGDTELTTLSDKQMTKLRRDRVGFVFQAFNLVPTLTALENITLPLDIAGRKADAEWLDTVL 139          
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Match: UPI001E2E6EFC (ABC transporter ATP-binding protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001E2E6EFC)

HSP 1 Score: 191 bits (486), Expect = 2.280e-58
Identity = 91/124 (73.39%), Postives = 108/124 (87.10%), Query Frame = 1
Query:   55 AAGAVGVSKTYGSGDTIVRALDNIDVDFVAGHFTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRRDRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI 426
            AA A G++K YGSG+T V ALD++DVD   G FTA+MGPSGSGKSTLMHCLAGLDNV++G++ LGDT++  L ERELT LRRDRVGF+FQ+FNL+PTLSALEN+TLPMD+AG KPDQAWLE VI
Sbjct:   19 AARARGLTKAYGSGETTVLALDSVDVDIARGRFTAVMGPSGSGKSTLMHCLAGLDNVSAGQVWLGDTEITGLKERELTQLRRDRVGFMFQSFNLIPTLSALENMTLPMDIAGRKPDQAWLEHVI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118589.3839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2BS80_9ACTN3.080e-6171.11ATP-binding cassette domain-containing protein (Fr... [more]
A0A2D8LV77_9ACTN1.340e-6076.00Peptide ABC transporter ATP-binding protein n=8 Ta... [more]
A0A6B0ZG18_9ACTN1.500e-6069.29ABC transporter ATP-binding protein n=9 Tax=Acidim... [more]
UPI0018F5C5A82.990e-6072.80ABC transporter ATP-binding protein n=2 Tax=Antrih... [more]
A0A662E956_9ACTN9.490e-6067.86ABC transporter ATP-binding protein n=1 Tax=Actino... [more]
A0A5Q2RR31_9ACTN1.070e-5971.11ATP-binding cassette domain-containing protein n=1... [more]
A0A7X6ASF0_9ACTN1.090e-5971.97ATP-binding cassette domain-containing protein n=1... [more]
A0A6I2ZXA1_9ACTN1.220e-5873.39ATP-binding cassette domain-containing protein n=3... [more]
UPI0018F6606F2.190e-5871.65ABC transporter ATP-binding protein n=1 Tax=Antrih... [more]
UPI001E2E6EFC2.280e-5873.39ABC transporter ATP-binding protein n=2 Tax=Strept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118589contigM-pyrifera_M_contig118589:123..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score192.2
Seed ortholog evalue1.7e-46
Seed eggNOG ortholog1449069.JMLO01000034_gene91
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC transporter
EggNOG OGs2GJN6@201174,4FWDD@85025,COG1136@1,COG1136@2
COG Functional cat.V
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.3798876-CDS-M-pyrifera_M_contig118589:122..5481622815705.3798876-CDS-M-pyrifera_M_contig118589:122..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118589 123..548 +
1692277530.7636874-CDS-M-pyrifera_M_contig118589:122..5481692277530.7636874-CDS-M-pyrifera_M_contig118589:122..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118589 123..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118589.3839.1prot_M-pyrifera_M_contig118589.3839.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118589 123..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118589.3839.1

>prot_M-pyrifera_M_contig118589.3839.1 ID=prot_M-pyrifera_M_contig118589.3839.1|Name=mRNA_M-pyrifera_M_contig118589.3839.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MTVLDPPIPSPTTRPNNLAAGAVGVSKTYGSGDTIVRALDNIDVDFVAGH
FTAIMGPSGSGKSTLMHCLAGLDNVTSGEILLGDTDLATLSERELTLLRR
DRVGFIFQAFNLVPTLSALENITLPMDLAGVKPDQAWLEQVI
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mRNA from alignment at M-pyrifera_M_contig118589:123..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118589.3839.1 ID=mRNA_M-pyrifera_M_contig118589.3839.1|Name=mRNA_M-pyrifera_M_contig118589.3839.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig118589:123..548+ (Macrocystis pyrifera P11B4 male)
ATGACGGTTCTCGATCCCCCAATTCCCTCCCCCACTACCCGGCCCAACAA TCTGGCGGCCGGTGCCGTCGGCGTGTCGAAGACCTACGGGTCGGGCGACA CCATCGTCCGAGCGCTCGACAACATCGACGTCGACTTCGTCGCCGGACAC TTCACCGCCATCATGGGTCCCTCCGGTTCCGGCAAGTCCACGCTCATGCA CTGCCTCGCCGGACTCGACAACGTCACCTCCGGCGAGATCCTCCTCGGCG ACACCGACCTGGCCACGCTCTCCGAGCGCGAGCTCACCCTGCTCCGTCGG GATCGGGTCGGCTTCATCTTCCAGGCGTTCAACCTCGTCCCGACCCTGTC GGCCCTCGAGAACATCACCCTGCCGATGGACCTCGCCGGCGTGAAGCCCG ACCAGGCCTGGCTCGAGCAGGTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118589:123..548+

>mRNA_M-pyrifera_M_contig118589.3839.1 ID=mRNA_M-pyrifera_M_contig118589.3839.1|Name=mRNA_M-pyrifera_M_contig118589.3839.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig118589:123..548+ (Macrocystis pyrifera P11B4 male)
ATGACGGTTCTCGATCCCCCAATTCCCTCCCCCACTACCCGGCCCAACAA
TCTGGCGGCCGGTGCCGTCGGCGTGTCGAAGACCTACGGGTCGGGCGACA
CCATCGTCCGAGCGCTCGACAACATCGACGTCGACTTCGTCGCCGGACAC
TTCACCGCCATCATGGGTCCCTCCGGTTCCGGCAAGTCCACGCTCATGCA
CTGCCTCGCCGGACTCGACAACGTCACCTCCGGCGAGATCCTCCTCGGCG
ACACCGACCTGGCCACGCTCTCCGAGCGCGAGCTCACCCTGCTCCGTCGG
GATCGGGTCGGCTTCATCTTCCAGGCGTTCAACCTCGTCCCGACCCTGTC
GGCCCTCGAGAACATCACCCTGCCGATGGACCTCGCCGGCGTGAAGCCCG
ACCAGGCCTGGCTCGAGCAGGTCATCATGACGGTTCTCGATCCCCCAATT
CCCTCCCCCACTACCCGGCCCAACAATCTGGCGGCCGGTGCCGTCGGCGT
GTCGAAGACCTACGGGTCGGGCGACACCATCGTCCGAGCGCTCGACAACA
TCGACGTCGACTTCGTCGCCGGACACTTCACCGCCATCATGGGTCCCTCC
GGTTCCGGCAAGTCCACGCTCATGCACTGCCTCGCCGGACTCGACAACGT
CACCTCCGGCGAGATCCTCCTCGGCGACACCGACCTGGCCACGCTCTCCG
AGCGCGAGCTCACCCTGCTCCGTCGGGATCGGGTCGGCTTCATCTTCCAG
GCGTTCAACCTCGTCCCGACCCTGTCGGCCCTCGAGAACATCACCCTGCC
GATGGACCTCGCCGGCGTGAAGCCCGACCAGGCCTGGCTCGAGCAGGTCA
TC
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