mRNA_M-pyrifera_M_contig118505.3825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118505.3825.1
Unique NamemRNA_M-pyrifera_M_contig118505.3825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A6B0X4B1_9BACT (AAA family ATPase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B0X4B1_9BACT)

HSP 1 Score: 259 bits (662), Expect = 1.860e-86
Identity = 119/156 (76.28%), Postives = 141/156 (90.38%), Query Frame = 1
Query:    4 LMDCKRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            +   KR+LIIAGPNGAGKTTFATEFLPNEA+CPIF+NADLIA+GLSPF+PDL A+RAGRLML  I ++AR+G++F+FETTLSGRGY+R+IP WQ QGY  KLFFLRLPTPE+AIARV+QRV EGGH+VP+++IRRRFHSG RNFE IYRD+VDEW 
Sbjct:    1 MTSLKRVLIIAGPNGAGKTTFATEFLPNEANCPIFINADLIASGLSPFRPDLVAVRAGRLMLNMIHDYARRGENFAFETTLSGRGYARLIPRWQGQGYWTKLFFLRLPTPEMAIARVRQRVVEGGHDVPESVIRRRFHSGWRNFEAIYRDLVDEWT 156          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A3B0Y3B5_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0Y3B5_9ZZZZ)

HSP 1 Score: 258 bits (659), Expect = 6.980e-86
Identity = 122/156 (78.21%), Postives = 139/156 (89.10%), Query Frame = 1
Query:    1 ALMDCKRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEW 468
            A++  KRILIIAGPNGAGKTTFA E+LPNEADCP+FVNADLIA GLSPF+P   AIRAG+LMLGQIREH RKG+SF+FETTLSGRGY R IP WQ QGYQVKLFFLRLPTPE+AIARVKQRV EGGH+VP+ +IRRRFHSG RNFE +++++ DEW
Sbjct:   10 AIVMTKRILIIAGPNGAGKTTFAEEYLPNEADCPVFVNADLIAKGLSPFQPGAVAIRAGKLMLGQIREHVRKGESFAFETTLSGRGYVRWIPRWQEQGYQVKLFFLRLPTPEMAIARVKQRVHEGGHDVPEAVIRRRFHSGWRNFENVFQELADEW 165          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A523PA94_9PROT (Zeta toxin family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PA94_9PROT)

HSP 1 Score: 257 bits (657), Expect = 9.710e-86
Identity = 122/147 (82.99%), Postives = 136/147 (92.52%), Query Frame = 1
Query:   31 IAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            IAGPNGAGKTTFATEFLPNEADCP FVNADLIAAGL PF+PD A IRAGRLML QI ++AR+G+SFSFETTLSGRGY+RMIP WQ QGYQVKLFFL+LPTPE+AIARVKQRV EGGH+VP+ ++RRRFHSG RNFELIYRD+VD+WA
Sbjct:    8 IAGPNGAGKTTFATEFLPNEADCPNFVNADLIAAGLYPFRPDSAGIRAGRLMLDQIHDYARRGESFSFETTLSGRGYARMIPRWQEQGYQVKLFFLQLPTPEMAIARVKQRVLEGGHDVPEAVVRRRFHSGWRNFELIYRDLVDDWA 154          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A6B1HXS8_9BACT (Zeta toxin family protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1HXS8_9BACT)

HSP 1 Score: 253 bits (645), Expect = 7.230e-84
Identity = 116/152 (76.32%), Postives = 136/152 (89.47%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            KRILIIAGPNGAGKTTFATEFLPNEA+CP F+NADLIA+GLSPFKPDL  +RAGRLML  I ++ R+G+SF+FETTLSGRGY+R+IP WQ QGY +KLFFLRLPT E+AI RV+QR+ EGGHNVP+++IRRRFH+G RNFE IYRD+VDEW 
Sbjct:    5 KRILIIAGPNGAGKTTFATEFLPNEANCPTFINADLIASGLSPFKPDLVEVRAGRLMLNMIHDYVRRGESFAFETTLSGRGYARLIPRWQKQGYWIKLFFLRLPTLEMAITRVRQRIQEGGHNVPESVIRRRFHAGWRNFETIYRDLVDEWT 156          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A3A6P494_9DELT (Zeta toxin family protein n=1 Tax=Desulfurivibrio sp. TaxID=2093369 RepID=A0A3A6P494_9DELT)

HSP 1 Score: 238 bits (608), Expect = 3.340e-78
Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            K+I+IIAGPNGAGKTTFA EFLP EA+CPIFVNADLIAAGL+PF PD AA +AGRLML +I E+AR+G+SF+FETTLSGRGY+R+IP W+A GY VKLFFLRL +PELAIARV+QRV EGGHNVP+  IRRRF +G RNFE IYR + +EWA
Sbjct:    7 KKIIIIAGPNGAGKTTFAEEFLPREANCPIFVNADLIAAGLAPFDPDRAAFKAGRLMLTEITEYARRGESFAFETTLSGRGYARLIPAWRADGYMVKLFFLRLTSPELAIARVRQRVIEGGHNVPEATIRRRFSAGWRNFEEIYRSIANEWA 158          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A7X3VS93_9BACT (AAA family ATPase n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A7X3VS93_9BACT)

HSP 1 Score: 237 bits (605), Expect = 9.560e-78
Identity = 113/153 (73.86%), Postives = 132/153 (86.27%), Query Frame = 1
Query:   10 DCKRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEW 468
            D KRI IIAGPNGAGKTTFATEFLPNEADCP+F+NAD+IAA L+P +P L A +AGRL+L QIREH RKG+SF+FETTLSGRGY+R IP W+ +GY+VKLFFL LPTPE+AIARV QRV EGGHNVP+ ++RRRF +G  NFE IYRD+VD W
Sbjct:    5 DEKRIFIIAGPNGAGKTTFATEFLPNEADCPLFINADIIAAELNPSEPHLVAFQAGRLVLNQIREHVRKGESFAFETTLSGRGYARHIPRWRERGYRVKLFFLWLPTPEMAIARVAQRVLEGGHNVPEAVLRRRFEAGWSNFEGIYRDLVDGW 157          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A6I4ZI73_9CHLR (Zeta toxin family protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZI73_9CHLR)

HSP 1 Score: 236 bits (602), Expect = 2.650e-77
Identity = 109/151 (72.19%), Postives = 134/151 (88.74%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEW 468
            K+ILIIAGPNGAGKT FAT+FLPNEA+C  F+NADLIAAGLSPF+P+LAA+ AGRLMLG +R++ ++G+SF+FETTLSGRGY R IP WQ QGY+V+LFFLRL TPE+AI RVKQRV EGGH+VP+ +IRRRF +G RNF+ +YRD+VD+W
Sbjct:    5 KKILIIAGPNGAGKTLFATQFLPNEANCATFINADLIAAGLSPFQPELAAVGAGRLMLGMMRDYVKRGESFAFETTLSGRGYVRSIPYWQEQGYRVELFFLRLRTPEMAIQRVKQRVLEGGHDVPEPVIRRRFEAGWRNFQTVYRDLVDDW 155          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: UPI00040AB673 (AAA family ATPase n=1 Tax=Desulfatirhabdium butyrativorans TaxID=340467 RepID=UPI00040AB673)

HSP 1 Score: 235 bits (599), Expect = 8.950e-77
Identity = 112/152 (73.68%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            K+I+IIAGPNG+GKTTFA EFLPNEA C  FVNADLIAAGL+PF+P+ AA RAGRLML +I  H+RKG+SFSFETTLSGRGY+ +IPVW+A+GY VKLFFL L +P+LAIARV+QRV EGGHN+P+ +IRRRF SGLRNFE +Y+ +VDEWA
Sbjct:   11 KKIIIIAGPNGSGKTTFAEEFLPNEAGCLTFVNADLIAAGLAPFEPERAAFRAGRLMLEEICRHSRKGESFSFETTLSGRGYAGLIPVWRAEGYIVKLFFLGLASPDLAIARVRQRVREGGHNIPEPVIRRRFDSGLRNFENLYKPLVDEWA 162          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A6L8DM68_9BACT (AAA family ATPase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L8DM68_9BACT)

HSP 1 Score: 234 bits (596), Expect = 2.240e-76
Identity = 113/152 (74.34%), Postives = 127/152 (83.55%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            K+I +IAGPNGAGKTTFATEFLPNEADCPIFVNADLIA GL+PF P    ++AGRLML QI EH +KG+SF+FETTLSGR Y+R IP W+ QGY+VKLFFL LP PE AIARV QRVSEGGH VP+ IIRRRF +G  NF  IYRD+VDEWA
Sbjct:    7 KKIFVIAGPNGAGKTTFATEFLPNEADCPIFVNADLIATGLNPFHPSKITVKAGRLMLRQIYEHVQKGESFAFETTLSGRSYTRWIPRWREQGYRVKLFFLCLPNPETAIARVAQRVSEGGHGVPEAIIRRRFDAGWDNFVNIYRDLVDEWA 158          
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Match: A0A840US17_9DELT (Putative ABC-type ATPase n=1 Tax=Desulfoprunum benzoelyticum TaxID=1506996 RepID=A0A840US17_9DELT)

HSP 1 Score: 233 bits (595), Expect = 3.640e-76
Identity = 110/152 (72.37%), Postives = 132/152 (86.84%), Query Frame = 1
Query:   16 KRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPDLAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVKLFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDMVDEWA 471
            K+I+IIAGPNGAGKTTFA EFLP EA CP FVNADLIAAGL+PF+P+ AA RAGRLML +I  H R+G+SF+FETTLSGRGY+ +IP W+ QGY VKLFFLRL +PELA+ARV+QRV EGGHN+P+ +IRRRF +GLRNFE +Y+ +VDEWA
Sbjct:   11 KKIIIIAGPNGAGKTTFAGEFLPMEAHCPAFVNADLIAAGLAPFEPERAAFRAGRLMLEEIYNHVRRGESFAFETTLSGRGYAGLIPGWREQGYIVKLFFLRLASPELAVARVRQRVREGGHNIPEPVIRRRFAAGLRNFETLYKPLVDEWA 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118505.3825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B0X4B1_9BACT1.860e-8676.28AAA family ATPase n=1 Tax=Gemmatimonadetes bacteri... [more]
A0A3B0Y3B5_9ZZZZ6.980e-8678.21Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A523PA94_9PROT9.710e-8682.99Zeta toxin family protein n=1 Tax=Proteobacteria b... [more]
A0A6B1HXS8_9BACT7.230e-8476.32Zeta toxin family protein n=2 Tax=Gemmatimonadetes... [more]
A0A3A6P494_9DELT3.340e-7875.00Zeta toxin family protein n=1 Tax=Desulfurivibrio ... [more]
A0A7X3VS93_9BACT9.560e-7873.86AAA family ATPase n=1 Tax=Candidatus Saccharibacte... [more]
A0A6I4ZI73_9CHLR2.650e-7772.19Zeta toxin family protein n=1 Tax=Dehalococcoidia ... [more]
UPI00040AB6738.950e-7773.68AAA family ATPase n=1 Tax=Desulfatirhabdium butyra... [more]
A0A6L8DM68_9BACT2.240e-7674.34AAA family ATPase n=1 Tax=Gemmatimonadetes bacteri... [more]
A0A840US17_9DELT3.640e-7672.37Putative ABC-type ATPase n=1 Tax=Desulfoprunum ben... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118505contigM-pyrifera_M_contig118505:1..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score234.2
Seed ortholog evalue4.1e-59
Seed eggNOG ortholog105559.Nwat_0198
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zeta toxin
EggNOG OGs1RFDC@1224,1SG1X@1236,1WZ0T@135613,COG4185@1,COG4185@2
COG Functional cat.S
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.7863243-CDS-M-pyrifera_M_contig118505:0..4651622815704.7863243-CDS-M-pyrifera_M_contig118505:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118505 1..465 -
1692277530.5355568-CDS-M-pyrifera_M_contig118505:0..4651692277530.5355568-CDS-M-pyrifera_M_contig118505:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118505 1..465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.8008695-UTR-M-pyrifera_M_contig118505:465..4711622815704.8008695-UTR-M-pyrifera_M_contig118505:465..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118505 466..471 -
1692277530.5476713-UTR-M-pyrifera_M_contig118505:465..4711692277530.5476713-UTR-M-pyrifera_M_contig118505:465..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118505 466..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118505.3825.1prot_M-pyrifera_M_contig118505.3825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118505 1..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118505.3825.1

>prot_M-pyrifera_M_contig118505.3825.1 ID=prot_M-pyrifera_M_contig118505.3825.1|Name=mRNA_M-pyrifera_M_contig118505.3825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MDCKRILIIAGPNGAGKTTFATEFLPNEADCPIFVNADLIAAGLSPFKPD
LAAIRAGRLMLGQIREHARKGDSFSFETTLSGRGYSRMIPVWQAQGYQVK
LFFLRLPTPELAIARVKQRVSEGGHNVPDTIIRRRFHSGLRNFELIYRDM
VDEWA
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mRNA from alignment at M-pyrifera_M_contig118505:1..471-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118505.3825.1 ID=mRNA_M-pyrifera_M_contig118505.3825.1|Name=mRNA_M-pyrifera_M_contig118505.3825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig118505:1..471- (Macrocystis pyrifera P11B4 male)
GCTCTTATGGATTGCAAGAGAATTTTGATAATCGCAGGGCCAAACGGTGC AGGGAAGACTACGTTTGCCACGGAATTCTTACCCAATGAGGCGGATTGTC CGATCTTCGTCAACGCCGATCTGATCGCGGCAGGACTAAGTCCGTTCAAA CCAGATTTGGCTGCGATTCGAGCGGGGAGATTAATGCTAGGTCAGATTCG TGAGCACGCACGAAAAGGTGACAGTTTTTCTTTCGAGACGACGCTGAGCG GGCGCGGCTATTCACGGATGATCCCGGTTTGGCAAGCGCAGGGTTATCAG GTAAAACTATTTTTTCTTCGATTACCAACGCCGGAATTGGCGATCGCTCG AGTCAAACAGCGTGTTTCAGAAGGCGGGCATAATGTTCCGGACACAATAA TCCGTCGTCGATTTCACTCGGGTTTAAGGAATTTCGAACTCATATATCGA GATATGGTGGATGAGTGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118505:1..471-

>mRNA_M-pyrifera_M_contig118505.3825.1 ID=mRNA_M-pyrifera_M_contig118505.3825.1|Name=mRNA_M-pyrifera_M_contig118505.3825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig118505:1..471- (Macrocystis pyrifera P11B4 male)
ATGGATTGCAAGAGAATTTTGATAATCGCAGGGCCAAACGGTGCAGGGAA
GACTACGTTTGCCACGGAATTCTTACCCAATGAGGCGGATTGTCCGATCT
TCGTCAACGCCGATCTGATCGCGGCAGGACTAAGTCCGTTCAAACCAGAT
TTGGCTGCGATTCGAGCGGGGAGATTAATGCTAGGTCAGATTCGTGAGCA
CGCACGAAAAGGTGACAGTTTTTCTTTCGAGACGACGCTGAGCGGGCGCG
GCTATTCACGGATGATCCCGGTTTGGCAAGCGCAGGGTTATCAGGTAAAA
CTATTTTTTCTTCGATTACCAACGCCGGAATTGGCGATCGCTCGAGTCAA
ACAGCGTGTTTCAGAAGGCGGGCATAATGTTCCGGACACAATAATCCGTC
GTCGATTTCACTCGGGTTTAAGGAATTTCGAACTCATATATCGAGATATG
GTGGATGAGTGGGCGATGGATTGCAAGAGAATTTTGATAATCGCAGGGCC
AAACGGTGCAGGGAAGACTACGTTTGCCACGGAATTCTTACCCAATGAGG
CGGATTGTCCGATCTTCGTCAACGCCGATCTGATCGCGGCAGGACTAAGT
CCGTTCAAACCAGATTTGGCTGCGATTCGAGCGGGGAGATTAATGCTAGG
TCAGATTCGTGAGCACGCACGAAAAGGTGACAGTTTTTCTTTCGAGACGA
CGCTGAGCGGGCGCGGCTATTCACGGATGATCCCGGTTTGGCAAGCGCAG
GGTTATCAGGTAAAACTATTTTTTCTTCGATTACCAACGCCGGAATTGGC
GATCGCTCGAGTCAAACAGCGTGTTTCAGAAGGCGGGCATAATGTTCCGG
ACACAATAATCCGTCGTCGATTTCACTCGGGTTTAAGGAATTTCGAACTC
ATATATCGAGATATGGTGGATGAGTGGGCG
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