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Homology
BLAST of mRNA_M-pyrifera_M_contig11849.3820.1 vs. uniprot
Match: D7G1A2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A2_ECTSI) HSP 1 Score: 477 bits (1227), Expect = 2.790e-155 Identity = 354/688 (51.45%), Postives = 391/688 (56.83%), Query Frame = 1
Query: 1 QMPPNLLALFAHVMSRANEG-SRGSAA-HSWDEVLTPAPSASS--------------DGGSPTGPC-PMSAQDWRKAEAFSVHLQSLIAARHTRCKSSNGIGRGGGGSGYNNHISNIAPF---------STAAEGGRSSXXXXXXXXXXXXXXXXXSSVGKGLQLANGKVKGKAKPQALQASQAGPSNAPSATVTAAGGGVAATPNPAP--MWTRNIVPRVTPKEQSRAG---EPSAPLKVVGRIAASRRVNGDAEGAVASLAVSRAGPGAFETPSHSSYH--------------------------AARTGAPPAESFRGREHSPSRYPARLRSRRFPQLGGSRESPEPPQPRGFGHGAAEGA--GVDGDQTQGGRRLSPRNSHP-SLAREDGRGFSSD---HSSARDWRVAA-----AEGGGAACAFTQLGHRNNDTNXXXXXXXXXXXXXXXXXXGNQNYGMRTRTA-PKAVHDLG---VAMASPS-----GTCTPQMAPAAVASPEPMDFRQAPPPIVAATAAGG-----AGSGPNSRAEVAA-KPRQVLQGG-RSGARVPPVPRSSVGGRNYTDNHVKQLALIEAAVVASATVKDRATYNLPRQGRTLTLTNVFKFIALQGAGVMYSLASEKQVEAHTGRHSNFFDGKIDARIVGIIKKDIGDEAITKSRKFSKILLSLIAEG 1812
QMPPNL+ LFAHVMSRANEG SRGSAA H WDEVL A G GPC PMSAQDWRKAEAFSVHLQSL+AAR C S+ G+G + AEG S ANG+ KG G + AP AA G AATPN A W +++ P TPKE S G EPSAP+K VGR+A SRRVNG AEGAVASLAVSRAGPGAFETP+HS+ H S RGREHSPSRYPARLRSRRFPQLGG A + G++G Q+QGGRRLSPR+S P S+ RE GRG SD +A W V A A G R + X G + YGMRTR A PK ++LG VA + PS G CTPQ+ AV SP PMDFR APPPI++ A P+ RAEVAA +PRQVLQGG RSG R P+PRSSVGGRNYTDNHVKQL LIEAAVVASAT +DRATYNLPRQGRTLTLTNVFKFIAL+GAG MY LA +KQVEAHTGRHSNFFDGKIDARIVG+IKKDIGDEAITKSRKFSKILLSL+AEG
Sbjct: 13 QMPPNLMTLFAHVMSRANEGGSRGSAAAHGWDEVLNAAXXXXXXXXXXXXXXXXXXXSGTISPGPCCPMSAQDWRKAEAFSVHLQSLLAARDALCGSNGSSSSSSRGAGATTGXXXXXXXXXXXXYYGPQSGAEGRCSPASSGPADGREPSPFPGGRK--DSTPHANGRAKG------------GRAKAP-----AAPSGAAATPNNAAGTAWPQHV-PGATPKESSSRGGGEEPSAPIKAVGRVAVSRRVNGGAEGAVASLAVSRAGPGAFETPAHSTSHHXXXXXXXXXXXXXXXXXXXPGTVDSXXXXXXXXXNSLRGREHSPSRYPARLRSRRFPQLGGXXXXXXXXXXXXXXXRAGDAGADGLEGHQSQGGRRLSPRHSPPASVGREHGRGIPSDARRQHNAHGWVVTAGAEKRAAGXXXXXXXXXXXXRGEEEGGVFTHDGGRGHEGGXGRAG-EGYGMRTRAAAPKGSYELGPAAVASSGPSSSPLPGACTPQITTGAVVSPVPMDFRPAPPPIMSXXXXXXXXXXVAAGRPSPRAEVAAPRPRQVLQGGGRSGGRAAPLPRSSVGGRNYTDNHVKQLGLIEAAVVASATARDRATYNLPRQGRTLTLTNVFKFIALRGAGAMYRLAMDKQVEAHTGRHSNFFDGKIDARIVGVIKKDIGDEAITKSRKFSKILLSLVAEG 679
BLAST of mRNA_M-pyrifera_M_contig11849.3820.1 vs. uniprot
Match: A0A835YUT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT3_9STRA) HSP 1 Score: 155 bits (392), Expect = 4.260e-37 Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 1453 RSSVGGRNYTDNHVKQLALIEAAVVASATVKDRATYNLPRQGRTLTLTNVFKFIALQGAGVMYSLASEKQVEAHTGRHSNFFDGKIDARIVGIIKKDIGDEAITKSRKFSKILLSLIAEG 1812
R+SVGGRNYTD ++QL LIEA VVA AT D A +NLPRQ RTL LTN+FK+IAL+GA ++++A + +E TGRHSNF+DGKID RIV ++K D+ D A T SRKFSK+LLSL+AEG
Sbjct: 369 RTSVGGRNYTDEQLRQLQLIEAEVVARATPGDHAAFNLPRQARTLALTNMFKYIALRGAARLHAMAVARGLEGRTGRHSNFYDGKIDTRIVAVVKHDMDDAAATASRKFSKVLLSLLAEG 488
BLAST of mRNA_M-pyrifera_M_contig11849.3820.1 vs. uniprot
Match: A0A835YSU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU2_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.770e-22 Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 1510 IEAAVVASATVKDRATYNLPRQGRTLTLTNVFKFIALQGAGVMYSLASEKQVEAHTGRHSNFFDGKIDARIVGIIKKDIGDEAITKSRKFSK 1785
IEA V A AT DRA ++LPRQ RTL LTN+FK+IAL+GA M++LA + + G+HSNF+DGKIDAR+V I+++D+GD+ T++RKFSK
Sbjct: 313 IEARVAARATDADRAAFSLPRQARTLALTNMFKYIALRGAAQMHALAVLRGLHTCGGKHSNFYDGKIDARVVAIVRRDVGDDVATQTRKFSK 404
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_005250.1 |
| Exons | 1 |
| Model size | 1821 |
| Cds size | 1818 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815704.4821343-UTR-M-pyrifera_M_contig11849:7610..7613 | 1622815704.4821343-UTR-M-pyrifera_M_contig11849:7610..7613 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig11849 7611..7613 + |
| 1692277530.3994317-UTR-M-pyrifera_M_contig11849:7610..7613 | 1692277530.3994317-UTR-M-pyrifera_M_contig11849:7610..7613 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig11849 7611..7613 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815704.4930637-CDS-M-pyrifera_M_contig11849:7613..9431 | 1622815704.4930637-CDS-M-pyrifera_M_contig11849:7613..9431 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11849 7614..9431 + |
| 1692277530.4152496-CDS-M-pyrifera_M_contig11849:7613..9431 | 1692277530.4152496-CDS-M-pyrifera_M_contig11849:7613..9431 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11849 7614..9431 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11849.3820.1 >prot_M-pyrifera_M_contig11849.3820.1 ID=prot_M-pyrifera_M_contig11849.3820.1|Name=mRNA_M-pyrifera_M_contig11849.3820.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=606bp
MPPNLLALFAHVMSRANEGSRGSAAHSWDEVLTPAPSASSDGGSPTGPCP MSAQDWRKAEAFSVHLQSLIAARHTRCKSSNGIGRGGGGSGYNNHISNIA PFSTAAEGGRSSSTAASSASNSRAAAASASSVGKGLQLANGKVKGKAKPQ ALQASQAGPSNAPSATVTAAGGGVAATPNPAPMWTRNIVPRVTPKEQSRA GEPSAPLKVVGRIAASRRVNGDAEGAVASLAVSRAGPGAFETPSHSSYHA ARTGAPPAESFRGREHSPSRYPARLRSRRFPQLGGSRESPEPPQPRGFGH GAAEGAGVDGDQTQGGRRLSPRNSHPSLAREDGRGFSSDHSSARDWRVAA AEGGGAACAFTQLGHRNNDTNNNHHYDHNDGDDDDDDGDGNQNYGMRTRT APKAVHDLGVAMASPSGTCTPQMAPAAVASPEPMDFRQAPPPIVAATAAG GAGSGPNSRAEVAAKPRQVLQGGRSGARVPPVPRSSVGGRNYTDNHVKQL ALIEAAVVASATVKDRATYNLPRQGRTLTLTNVFKFIALQGAGVMYSLAS EKQVEAHTGRHSNFFDGKIDARIVGIIKKDIGDEAITKSRKFSKILLSLI AEGLN* back to topmRNA from alignment at M-pyrifera_M_contig11849:7611..9431+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig11849.3820.1 ID=mRNA_M-pyrifera_M_contig11849.3820.1|Name=mRNA_M-pyrifera_M_contig11849.3820.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at M-pyrifera_M_contig11849:7611..9431+ (Macrocystis pyrifera P11B4 male) CAGATGCCGCCGAATCTCTTGGCACTATTTGCCCACGTCATGAGCAGAGC
CAACGAGGGCAGTCGTGGGTCCGCCGCCCACAGCTGGGACGAAGTGCTTA
CACCCGCGCCTTCTGCGTCCTCGGACGGCGGCTCTCCGACGGGACCGTGT
CCGATGAGCGCGCAGGACTGGCGAAAGGCCGAGGCGTTCAGCGTCCACCT
CCAGTCCCTCATCGCCGCACGCCACACGCGTTGCAAGTCCTCCAACGGAA
TCGGACGAGGAGGAGGAGGCTCTGGGTACAACAACCACATAAGCAATATC
GCACCCTTCTCCACCGCTGCAGAGGGGGGCCGTTCCAGCTCCACCGCTGC
CAGCTCTGCATCCAACTCGCGCGCCGCCGCCGCCTCCGCCTCCTCTGTTG
GGAAGGGCCTCCAGCTCGCCAACGGCAAGGTGAAGGGCAAGGCGAAGCCC
CAGGCTTTGCAGGCGTCGCAAGCCGGGCCCTCCAACGCTCCCTCTGCGAC
AGTGACGGCGGCGGGGGGCGGGGTAGCGGCCACCCCGAACCCGGCTCCTA
TGTGGACTCGGAACATCGTCCCCCGGGTCACCCCAAAGGAGCAGTCGCGC
GCGGGAGAGCCCTCGGCGCCGCTGAAGGTGGTGGGACGTATCGCGGCCTC
GCGCCGCGTGAACGGCGACGCCGAGGGCGCCGTGGCCTCCCTCGCAGTGT
CTCGGGCCGGACCCGGTGCGTTCGAGACACCGAGCCACTCCTCCTACCAC
GCGGCGCGAACGGGGGCCCCGCCCGCTGAGAGCTTCCGTGGCAGGGAACA
TTCTCCTTCGAGGTACCCGGCGCGCTTGAGAAGCCGACGCTTCCCTCAGC
TGGGGGGCAGCAGAGAAAGTCCCGAGCCCCCACAGCCTCGAGGGTTCGGG
CACGGGGCGGCGGAGGGAGCCGGGGTAGACGGCGACCAGACCCAGGGAGG
GAGACGCCTCAGCCCCCGCAACTCCCACCCTTCGCTCGCGCGCGAGGACG
GGCGCGGGTTTTCGTCCGACCACAGCAGCGCGCGCGACTGGCGCGTCGCC
GCGGCGGAAGGAGGGGGCGCTGCGTGCGCGTTCACGCAGCTGGGACACCG
CAACAACGACACCAACAACAACCACCACTACGACCACAACGACGGCGATG
ATGATGATGATGATGGCGACGGCAATCAGAACTACGGGATGAGGACGCGG
ACGGCGCCGAAGGCCGTGCACGACTTAGGAGTAGCCATGGCCTCGCCTTC
GGGGACCTGCACCCCGCAGATGGCCCCCGCGGCTGTCGCCTCTCCGGAGC
CGATGGACTTCCGGCAGGCGCCGCCACCCATCGTGGCCGCTACCGCCGCC
GGTGGTGCCGGCTCCGGCCCAAATTCCAGGGCGGAGGTAGCGGCGAAGCC
TCGACAAGTCCTTCAGGGAGGGCGTTCGGGCGCTCGGGTGCCCCCCGTGC
CGCGATCCTCGGTCGGGGGGCGTAACTACACGGACAACCATGTGAAACAG
CTGGCACTAATTGAGGCGGCGGTGGTGGCGAGCGCTACGGTGAAGGACCG
CGCCACGTACAACCTACCCCGGCAGGGGCGCACGCTGACGCTGACGAACG
TGTTCAAATTCATCGCGCTGCAAGGGGCGGGCGTGATGTACAGCCTCGCG
TCGGAGAAGCAGGTGGAGGCGCACACCGGGCGCCACTCGAACTTCTTCGA
CGGTAAGATCGACGCTCGCATCGTGGGCATCATCAAGAAGGACATCGGCG
ACGAGGCCATCACCAAGTCCCGCAAGTTCTCCAAGATCTTGCTCTCTCTG
ATCGCTGAAGGTTTGAATTGA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig11849:7611..9431+ >mRNA_M-pyrifera_M_contig11849.3820.1 ID=mRNA_M-pyrifera_M_contig11849.3820.1|Name=mRNA_M-pyrifera_M_contig11849.3820.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3636bp|location=Sequence derived from alignment at M-pyrifera_M_contig11849:7611..9431+ (Macrocystis pyrifera P11B4 male) ATGCCGCCGAATCTCTTGGCACTATTTGCCCACGTCATGAGCAGAGCCAA CGAGGGCAGTCGTGGGTCCGCCGCCCACAGCTGGGACGAAGTGCTTACAC CCGCGCCTTCTGCGTCCTCGGACGGCGGCTCTCCGACGGGACCGTGTCCG ATGAGCGCGCAGGACTGGCGAAAGGCCGAGGCGTTCAGCGTCCACCTCCA GTCCCTCATCGCCGCACGCCACACGCGTTGCAAGTCCTCCAACGGAATCG GACGAGGAGGAGGAGGCTCTGGGTACAACAACCACATAAGCAATATCGCA CCCTTCTCCACCGCTGCAGAGGGGGGCCGTTCCAGCTCCACCGCTGCCAG CTCTGCATCCAACTCGCGCGCCGCCGCCGCCTCCGCCTCCTCTGTTGGGA AGGGCCTCCAGCTCGCCAACGGCAAGGTGAAGGGCAAGGCGAAGCCCCAG GCTTTGCAGGCGTCGCAAGCCGGGCCCTCCAACGCTCCCTCTGCGACAGT GACGGCGGCGGGGGGCGGGGTAGCGGCCACCCCGAACCCGGCTCCTATGT GGACTCGGAACATCGTCCCCCGGGTCACCCCAAAGGAGCAGTCGCGCGCG GGAGAGCCCTCGGCGCCGCTGAAGGTGGTGGGACGTATCGCGGCCTCGCG CCGCGTGAACGGCGACGCCGAGGGCGCCGTGGCCTCCCTCGCAGTGTCTC GGGCCGGACCCGGTGCGTTCGAGACACCGAGCCACTCCTCCTACCACGCG GCGCGAACGGGGGCCCCGCCCGCTGAGAGCTTCCGTGGCAGGGAACATTC TCCTTCGAGGTACCCGGCGCGCTTGAGAAGCCGACGCTTCCCTCAGCTGG GGGGCAGCAGAGAAAGTCCCGAGCCCCCACAGCCTCGAGGGTTCGGGCAC GGGGCGGCGGAGGGAGCCGGGGTAGACGGCGACCAGACCCAGGGAGGGAG ACGCCTCAGCCCCCGCAACTCCCACCCTTCGCTCGCGCGCGAGGACGGGC GCGGGTTTTCGTCCGACCACAGCAGCGCGCGCGACTGGCGCGTCGCCGCG GCGGAAGGAGGGGGCGCTGCGTGCGCGTTCACGCAGCTGGGACACCGCAA CAACGACACCAACAACAACCACCACTACGACCACAACGACGGCGATGATG ATGATGATGATGGCGACGGCAATCAGAACTACGGGATGAGGACGCGGACG GCGCCGAAGGCCGTGCACGACTTAGGAGTAGCCATGGCCTCGCCTTCGGG GACCTGCACCCCGCAGATGGCCCCCGCGGCTGTCGCCTCTCCGGAGCCGA TGGACTTCCGGCAGGCGCCGCCACCCATCGTGGCCGCTACCGCCGCCGGT GGTGCCGGCTCCGGCCCAAATTCCAGGGCGGAGGTAGCGGCGAAGCCTCG ACAAGTCCTTCAGGGAGGGCGTTCGGGCGCTCGGGTGCCCCCCGTGCCGC GATCCTCGGTCGGGGGGCGTAACTACACGGACAACCATGTGAAACAGCTG GCACTAATTGAGGCGGCGGTGGTGGCGAGCGCTACGGTGAAGGACCGCGC CACGTACAACCTACCCCGGCAGGGGCGCACGCTGACGCTGACGAACGTGT TCAAATTCATCGCGCTGCAAGGGGCGGGCGTGATGTACAGCCTCGCGTCG GAGAAGCAGGTGGAGGCGCACACCGGGCGCCACTCGAACTTCTTCGACGG TAAGATCGACGCTCGCATCGTGGGCATCATCAAGAAGGACATCGGCGACG AGGCCATCACCAAGTCCCGCAAGTTCTCCAAGATCTTGCTCTCTCTGATC GCTGAAGGTTTGAATTGAATGCCGCCGAATCTCTTGGCACTATTTGCCCA CGTCATGAGCAGAGCCAACGAGGGCAGTCGTGGGTCCGCCGCCCACAGCT GGGACGAAGTGCTTACACCCGCGCCTTCTGCGTCCTCGGACGGCGGCTCT CCGACGGGACCGTGTCCGATGAGCGCGCAGGACTGGCGAAAGGCCGAGGC GTTCAGCGTCCACCTCCAGTCCCTCATCGCCGCACGCCACACGCGTTGCA AGTCCTCCAACGGAATCGGACGAGGAGGAGGAGGCTCTGGGTACAACAAC CACATAAGCAATATCGCACCCTTCTCCACCGCTGCAGAGGGGGGCCGTTC CAGCTCCACCGCTGCCAGCTCTGCATCCAACTCGCGCGCCGCCGCCGCCT CCGCCTCCTCTGTTGGGAAGGGCCTCCAGCTCGCCAACGGCAAGGTGAAG GGCAAGGCGAAGCCCCAGGCTTTGCAGGCGTCGCAAGCCGGGCCCTCCAA CGCTCCCTCTGCGACAGTGACGGCGGCGGGGGGCGGGGTAGCGGCCACCC CGAACCCGGCTCCTATGTGGACTCGGAACATCGTCCCCCGGGTCACCCCA AAGGAGCAGTCGCGCGCGGGAGAGCCCTCGGCGCCGCTGAAGGTGGTGGG ACGTATCGCGGCCTCGCGCCGCGTGAACGGCGACGCCGAGGGCGCCGTGG CCTCCCTCGCAGTGTCTCGGGCCGGACCCGGTGCGTTCGAGACACCGAGC CACTCCTCCTACCACGCGGCGCGAACGGGGGCCCCGCCCGCTGAGAGCTT CCGTGGCAGGGAACATTCTCCTTCGAGGTACCCGGCGCGCTTGAGAAGCC GACGCTTCCCTCAGCTGGGGGGCAGCAGAGAAAGTCCCGAGCCCCCACAG CCTCGAGGGTTCGGGCACGGGGCGGCGGAGGGAGCCGGGGTAGACGGCGA CCAGACCCAGGGAGGGAGACGCCTCAGCCCCCGCAACTCCCACCCTTCGC TCGCGCGCGAGGACGGGCGCGGGTTTTCGTCCGACCACAGCAGCGCGCGC GACTGGCGCGTCGCCGCGGCGGAAGGAGGGGGCGCTGCGTGCGCGTTCAC GCAGCTGGGACACCGCAACAACGACACCAACAACAACCACCACTACGACC ACAACGACGGCGATGATGATGATGATGATGGCGACGGCAATCAGAACTAC GGGATGAGGACGCGGACGGCGCCGAAGGCCGTGCACGACTTAGGAGTAGC CATGGCCTCGCCTTCGGGGACCTGCACCCCGCAGATGGCCCCCGCGGCTG TCGCCTCTCCGGAGCCGATGGACTTCCGGCAGGCGCCGCCACCCATCGTG GCCGCTACCGCCGCCGGTGGTGCCGGCTCCGGCCCAAATTCCAGGGCGGA GGTAGCGGCGAAGCCTCGACAAGTCCTTCAGGGAGGGCGTTCGGGCGCTC GGGTGCCCCCCGTGCCGCGATCCTCGGTCGGGGGGCGTAACTACACGGAC AACCATGTGAAACAGCTGGCACTAATTGAGGCGGCGGTGGTGGCGAGCGC TACGGTGAAGGACCGCGCCACGTACAACCTACCCCGGCAGGGGCGCACGC TGACGCTGACGAACGTGTTCAAATTCATCGCGCTGCAAGGGGCGGGCGTG ATGTACAGCCTCGCGTCGGAGAAGCAGGTGGAGGCGCACACCGGGCGCCA CTCGAACTTCTTCGACGGTAAGATCGACGCTCGCATCGTGGGCATCATCA AGAAGGACATCGGCGACGAGGCCATCACCAAGTCCCGCAAGTTCTCCAAG ATCTTGCTCTCTCTGATCGCTGAAGGTTTGAATTGA back to top
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