mRNA_M-pyrifera_M_contig118393.3809.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118393.3809.1
Unique NamemRNA_M-pyrifera_M_contig118393.3809.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: UPI001D145A59 (AAA family ATPase n=1 Tax=Gimesia benthica TaxID=2608982 RepID=UPI001D145A59)

HSP 1 Score: 339 bits (870), Expect = 9.050e-114
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 1
Query:    1 EATGKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVSTSALPELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            EATGKTASNTVNTEELLASLSMLELAA+E SDDSDSYAEDD DG+STSALPELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF
Sbjct:   12 EATGKTASNTVNTEELLASLSMLELAASENSDDSDSYAEDDLDGLSTSALPELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 193          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A518ACC1_9PLAN (AAA domain-containing protein n=12 Tax=Gimesia TaxID=1649453 RepID=A0A518ACC1_9PLAN)

HSP 1 Score: 300 bits (769), Expect = 1.780e-97
Identity = 159/182 (87.36%), Postives = 167/182 (91.76%), Query Frame = 1
Query:    1 EATGKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVSTSALPELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            E+  KTAS TVNTEELLASLSMLELAAAE SD++D     +A+ + TSA+PEL EPMRVIGKDQHLSQLFNRVQSLLKGS EESQG F+PQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEF ITELGRERARRYTQECTYF
Sbjct:   21 ESKQKTASGTVNTEELLASLSMLELAAAEHSDETDVDDVANAEDLPTSAMPELQEPMRVIGKDQHLSQLFNRVQSLLKGSTEESQGNFIPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFQITELGRERARRYTQECTYF 202          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A6CE29_9PLAN (Uncharacterized protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6CE29_9PLAN)

HSP 1 Score: 262 bits (669), Expect = 1.940e-82
Identity = 141/182 (77.47%), Postives = 155/182 (85.16%), Query Frame = 1
Query:   10 GKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVSTSALP---ELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            G+TASN VNTEELLASLSML L + E S +S +  +     +  + LP    +SEPMRVIGKDQHLSQLFNRVQSLLKG +EE++GKF+P CPETL+DTGLTQDEIERLILKYLLAKGTQTGRQIC QIKLPFGIVD ILKRAKQDQLVA+G TAEMGDYEF ITELGRERARRYTQECTYF
Sbjct:   24 GRTASNAVNTEELLASLSMLNLNSDEDSGESGTE-KTSKSSIVAAHLPLSKGVSEPMRVIGKDQHLSQLFNRVQSLLKGDSEEAEGKFIPHCPETLEDTGLTQDEIERLILKYLLAKGTQTGRQICAQIKLPFGIVDTILKRAKQDQLVAFGGTAEMGDYEFTITELGRERARRYTQECTYF 204          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A518II66_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518II66_9PLAN)

HSP 1 Score: 262 bits (669), Expect = 5.350e-82
Identity = 144/187 (77.01%), Postives = 154/187 (82.35%), Query Frame = 1
Query:    1 EATGKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVST----SALPELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQ-GKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            E  GKTASN VNTEELLASLSML L     SDD  + A  +   + T    S   ++SEPMRVIGKDQHLSQLFNRVQSLLKG AEE Q G F+PQCPETL+DTGLTQDEIERLILKYLLAKGTQTGRQI +Q+KLPFGI+D ILKRAKQDQLVAYG TAEMGDYEF ITELGRERARRYTQECTYF
Sbjct:   59 EKLGKTASNAVNTEELLASLSMLNLTGDGDSDDPSNEAALEELAIKTAEQLSGETDVSEPMRVIGKDQHLSQLFNRVQSLLKGDAEEQQHGSFIPQCPETLEDTGLTQDEIERLILKYLLAKGTQTGRQISQQVKLPFGIIDPILKRAKQDQLVAYGGTAEMGDYEFTITELGRERARRYTQECTYF 245          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A517VSM0_9PLAN (AAA domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSM0_9PLAN)

HSP 1 Score: 237 bits (604), Expect = 1.180e-72
Identity = 132/189 (69.84%), Postives = 148/189 (78.31%), Query Frame = 1
Query:   10 GKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVSTSALP----------ELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            G  ASN VNTEELLASLSML L A   S++S    E   D   TS +P          E SEPM V+GK +HLSQLFNRVQSLL G AEE QG FVP+ PE++++TGLT DEIERLILK+LLAKGT+TGRQIC+QI+LPFGIVD ILKRAKQDQLVA+G TAEMGDYEF ITELGRERARR+TQECTYF
Sbjct:   24 GDIASNAVNTEELLASLSMLNLTATGDSEESTDTEELITDH-QTSEVPNGATAPPLQTESSEPMHVVGKSEHLSQLFNRVQSLLTGDAEEQQGTFVPKSPESMEETGLTLDEIERLILKFLLAKGTRTGRQICQQIRLPFGIVDPILKRAKQDQLVAFGGTAEMGDYEFTITELGRERARRFTQECTYF 211          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A3B1DE08_9ZZZZ (Predicted ATPase with chaperone activity, associated with Flp pilus assembly n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DE08_9ZZZZ)

HSP 1 Score: 152 bits (384), Expect = 2.240e-40
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  196 LSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            LS LFNRV  LL G++ ++   F P+ PETL +TGLT +EIER+ILK+LL+ G+  GR IC+QIKLP+ ++D ILKR K DQL+A+  TA+MGDYEF ITE GR+RARRY+ ECTYF
Sbjct:   87 LSNLFNRVNVLLSGASSQNAVAFQPKSPETLLETGLTTEEIERIILKFLLSIGSAVGRAICQQIKLPYAVIDPILKRLKNDQLLAFSGTAQMGDYEFTITESGRDRARRYSDECTYF 203          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A3L7QE32_9BACT (AAA family ATPase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QE32_9BACT)

HSP 1 Score: 150 bits (379), Expect = 1.900e-39
Identity = 71/118 (60.17%), Postives = 93/118 (78.81%), Query Frame = 1
Query:  190 QHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTY 543
            +HL +LFNRV+SLL    + ++G FVP+CP +++DT L  +EIERLILK+LL KG  TGR+IC  +KLPF I++ I+K+ K+DQLVAY  TAEMGDY F I +LGRERARRY +EC+Y
Sbjct:  128 RHLEELFNRVESLLGEKPDPNKG-FVPRCPNSIEDTLLAPEEIERLILKFLLQKGAATGREICSNVKLPFTIIEPIMKQMKKDQLVAYKGTAEMGDYNFTIIDLGRERARRYMEECSY 244          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A517QY75_9BACT (AAA domain-containing protein n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QY75_9BACT)

HSP 1 Score: 149 bits (376), Expect = 5.200e-39
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  196 LSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            LSQLF+RV  LL GS  + +  F P  PE+L++TGL  DE+ERL LK+LLAKG+  GR+IC+Q++LPF +VD ILK+ KQ+QLV +   AEMGDYEF IT+ GRERARRY++ECTYF
Sbjct:  129 LSQLFDRVHDLL-GSKSQQEVTFRPPVPESLEETGLMADEVERLALKFLLAKGSAPGREICQQMRLPFALVDPILKQLKQEQLVGFRGAAEMGDYEFQITDYGRERARRYSEECTYF 244          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A2D6SUE8_9PLAN (AAA family ATPase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SUE8_9PLAN)

HSP 1 Score: 147 bits (372), Expect = 1.700e-38
Identity = 67/117 (57.26%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  196 LSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            L+ LF RV +LL     ++   F P  P TL++TGLT +E+ERLILKY+ +KG+ TGRQ+C+QI++P+GI++ I+K+ KQDQ++A+  TAEMGDY+F ITE GRERAR Y QECTYF
Sbjct:  118 LTDLFARVHTLLDEGELDAGEPFQPTAPSTLEETGLTYEEVERLILKYVFSKGSATGRQVCQQIRMPYGIIEPIMKQLKQDQMLAFKGTAEMGDYDFAITEFGRERARAYMQECTYF 234          
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Match: A0A517T5A2_9PLAN (AAA domain-containing protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T5A2_9PLAN)

HSP 1 Score: 145 bits (367), Expect = 5.280e-38
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  196 LSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTGLTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVAYGSTAEMGDYEFMITELGRERARRYTQECTYF 546
            LS+LF+RV +LL G  EE +  F P  PE  ++TGLT +E+ERLILKYLL+ G  TGR IC QIKLPF ++D +LK+ K +QL+A+  TAEM DYE+ IT+ GRERARRY++ECTYF
Sbjct:   74 LSELFDRVHNLL-GPKEEGEEAFRPTIPERFEETGLTHEEVERLILKYLLSVGAATGRGICTQIKLPFALIDPLLKQFKHEQLLAFRGTAEMSDYEYQITDYGRERARRYSEECTYF 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118393.3809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D145A599.050e-11497.80AAA family ATPase n=1 Tax=Gimesia benthica TaxID=2... [more]
A0A518ACC1_9PLAN1.780e-9787.36AAA domain-containing protein n=12 Tax=Gimesia Tax... [more]
A6CE29_9PLAN1.940e-8277.47Uncharacterized protein n=9 Tax=Planctomycetaceae ... [more]
A0A518II66_9PLAN5.350e-8277.01Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517VSM0_9PLAN1.180e-7269.84AAA domain-containing protein n=2 Tax=Gimesia aqua... [more]
A0A3B1DE08_9ZZZZ2.240e-4061.54Predicted ATPase with chaperone activity, associat... [more]
A0A3L7QE32_9BACT1.900e-3960.17AAA family ATPase n=1 Tax=Planctomycetes bacterium... [more]
A0A517QY75_9BACT5.200e-3961.54AAA domain-containing protein n=1 Tax=Planctomycet... [more]
A0A2D6SUE8_9PLAN1.700e-3857.26AAA family ATPase n=1 Tax=Planctomycetaceae bacter... [more]
A0A517T5A2_9PLAN5.280e-3859.83AAA domain-containing protein n=1 Tax=Calycomorpho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118393contigM-pyrifera_M_contig118393:3..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score264.2
Seed ortholog evalue4.4e-68
Seed eggNOG ortholog344747.PM8797T_19637
Hectar predicted targeting categoryother localisation
EggNOG free text desc.growth
EggNOG OGs2IX7A@203682,COG0464@1,COG0464@2
COG Functional cat.O
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.6394885-CDS-M-pyrifera_M_contig118393:2..5481622815703.6394885-CDS-M-pyrifera_M_contig118393:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118393 3..548 -
1692277529.9288385-CDS-M-pyrifera_M_contig118393:2..5481692277529.9288385-CDS-M-pyrifera_M_contig118393:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118393 3..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118393.3809.1prot_M-pyrifera_M_contig118393.3809.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118393 3..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118393.3809.1

>prot_M-pyrifera_M_contig118393.3809.1 ID=prot_M-pyrifera_M_contig118393.3809.1|Name=mRNA_M-pyrifera_M_contig118393.3809.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
EATGKTASNTVNTEELLASLSMLELAAAEVSDDSDSYAEDDADGVSTSAL
PELSEPMRVIGKDQHLSQLFNRVQSLLKGSAEESQGKFVPQCPETLDDTG
LTQDEIERLILKYLLAKGTQTGRQICKQIKLPFGIVDAILKRAKQDQLVA
YGSTAEMGDYEFMITELGRERARRYTQECTYF
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mRNA from alignment at M-pyrifera_M_contig118393:3..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118393.3809.1 ID=mRNA_M-pyrifera_M_contig118393.3809.1|Name=mRNA_M-pyrifera_M_contig118393.3809.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118393:3..548- (Macrocystis pyrifera P11B4 male)
GAAGCCACGGGGAAAACCGCATCGAATACGGTGAATACCGAAGAGCTTCT GGCCTCTTTGAGCATGCTGGAGCTGGCTGCCGCGGAGGTTTCTGACGATT CGGACTCGTATGCTGAAGACGACGCCGATGGGGTGTCGACCTCTGCACTT CCCGAATTAAGCGAACCCATGCGGGTGATTGGCAAGGATCAGCATCTGAG CCAGTTGTTTAATCGCGTACAGTCCCTGCTGAAAGGGAGTGCCGAAGAAT CGCAGGGGAAATTCGTTCCACAGTGTCCGGAAACGCTGGATGATACCGGT TTGACCCAGGATGAAATCGAGAGATTGATCCTCAAGTATCTGCTGGCAAA AGGAACTCAAACGGGACGACAGATCTGCAAGCAGATCAAGTTGCCCTTTG GAATTGTGGACGCCATTCTGAAACGTGCCAAGCAGGATCAACTGGTTGCC TATGGCAGTACTGCCGAGATGGGCGACTATGAATTCATGATTACCGAACT TGGTCGGGAGCGCGCACGACGGTATACGCAGGAGTGTACCTATTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118393:3..548-

>mRNA_M-pyrifera_M_contig118393.3809.1 ID=mRNA_M-pyrifera_M_contig118393.3809.1|Name=mRNA_M-pyrifera_M_contig118393.3809.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118393:3..548- (Macrocystis pyrifera P11B4 male)
GAAGCCACGGGGAAAACCGCATCGAATACGGTGAATACCGAAGAGCTTCT
GGCCTCTTTGAGCATGCTGGAGCTGGCTGCCGCGGAGGTTTCTGACGATT
CGGACTCGTATGCTGAAGACGACGCCGATGGGGTGTCGACCTCTGCACTT
CCCGAATTAAGCGAACCCATGCGGGTGATTGGCAAGGATCAGCATCTGAG
CCAGTTGTTTAATCGCGTACAGTCCCTGCTGAAAGGGAGTGCCGAAGAAT
CGCAGGGGAAATTCGTTCCACAGTGTCCGGAAACGCTGGATGATACCGGT
TTGACCCAGGATGAAATCGAGAGATTGATCCTCAAGTATCTGCTGGCAAA
AGGAACTCAAACGGGACGACAGATCTGCAAGCAGATCAAGTTGCCCTTTG
GAATTGTGGACGCCATTCTGAAACGTGCCAAGCAGGATCAACTGGTTGCC
TATGGCAGTACTGCCGAGATGGGCGACTATGAATTCATGATTACCGAACT
TGGTCGGGAGCGCGCACGACGGTATACGCAGGAGTGTACCTATTTCGAAG
CCACGGGGAAAACCGCATCGAATACGGTGAATACCGAAGAGCTTCTGGCC
TCTTTGAGCATGCTGGAGCTGGCTGCCGCGGAGGTTTCTGACGATTCGGA
CTCGTATGCTGAAGACGACGCCGATGGGGTGTCGACCTCTGCACTTCCCG
AATTAAGCGAACCCATGCGGGTGATTGGCAAGGATCAGCATCTGAGCCAG
TTGTTTAATCGCGTACAGTCCCTGCTGAAAGGGAGTGCCGAAGAATCGCA
GGGGAAATTCGTTCCACAGTGTCCGGAAACGCTGGATGATACCGGTTTGA
CCCAGGATGAAATCGAGAGATTGATCCTCAAGTATCTGCTGGCAAAAGGA
ACTCAAACGGGACGACAGATCTGCAAGCAGATCAAGTTGCCCTTTGGAAT
TGTGGACGCCATTCTGAAACGTGCCAAGCAGGATCAACTGGTTGCCTATG
GCAGTACTGCCGAGATGGGCGACTATGAATTCATGATTACCGAACTTGGT
CGGGAGCGCGCACGACGGTATACGCAGGAGTGTACCTATTTC
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