mRNA_M-pyrifera_M_contig118369.3802.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118369.3802.1
Unique NamemRNA_M-pyrifera_M_contig118369.3802.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A5A8BYI6_CAFRO (MFS domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8BYI6_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 1.570e-29
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    4 RAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFST-SKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            RA+ + PLSLWIL ISC++TY AILPFNNIAS F+ TR+ T +   AN  M + ++ + ++SP LG  ID IG RA   L +A++IT  HL +  +   P V L  +G+ YS YAAALWPSIALV       +AYG+ TA Q
Sbjct:  322 RAVLRLPLSLWILTISCVTTYCAILPFNNIASDFIVTRWPTITAGTANYYMAVTYTTAGLVSPFLGAFIDCIGMRAVFCLASALVITGVHLLLGLSSITPLVGLVFMGLAYSFYAAALWPSIALVVDEEIVGTAYGLTTAAQ 463          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A7S0JZD1_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JZD1_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 1.940e-29
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    4 RAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFST-SKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            RA+ + PLSLWIL ISC++TY AILPFNNIAS F+ TR+ T +   AN  M + ++ + ++SP LG  ID IG RA   L +A++IT  HL +  +   P V L  +G+ YS YAAALWPSIALV       +AYG+ TA Q
Sbjct:  323 RAVLRLPLSLWILTISCVTTYCAILPFNNIASDFIVTRWPTITAGTANYYMAVTYTTAGLVSPFLGAFIDCIGMRAVFCLASALVITGVHLLLGLSSITPLVGLVFMGLAYSFYAAALWPSIALVVDEEIVGTAYGLTTAAQ 464          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A7S2S3K0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S3K0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.280e-26
Identity = 65/158 (41.14%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 YRAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTR----------------FSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            +R++ +FPL+ WIL ISC S YA ++PF+N+ S FL  R                   +++ A+ +M I +++S +L P LG+++DR G RA L L++A  + + H+ +A T       L LLG+ Y+VYAAALWPSIALV P A    AYG++TA+Q
Sbjct:  221 FRSVLRFPLTYWILCISCCSVYACVIPFHNVISAFLIERRCGGSCCAPGNDQCDAHLEAEKSASYIMGIPYAISGILVPFLGLMVDRFGGRALLTLVSACSLFIVHMLLALTSVTAIGPLILLGLAYAVYAAALWPSIALVVPKAEVGLAYGLMTALQ 378          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A2G8KW57_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KW57_STIJA)

HSP 1 Score: 108 bits (271), Expect = 3.170e-25
Identity = 55/142 (38.73%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 YRAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            +R I  FP+SLW++ I C++ Y A+ PF ++   F+  +F+T+   ANL++ +VF +SAV SPI+G+++D  G       +  +L   +H+ +A T+ PP +A+ ++G+ YSV A ALWP +A VTP     +AYG + +IQ
Sbjct:  253 FRDILDFPVSLWLIFIICVTYYVAVFPFISLGPAFIADKFNTTTAYANLIISLVFIISAVASPIIGVIVDYTGRNIFWVALGVLLTLGAHMILAFTFAPPLLAMCIMGVAYSVLACALWPMVAFVTPEHQLGTAYGCMQSIQ 394          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A2P4SEJ7_BAMTH (Uncharacterized protein n=2 Tax=Neognathae TaxID=8825 RepID=A0A2P4SEJ7_BAMTH)

HSP 1 Score: 104 bits (259), Expect = 4.930e-25
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   16 KFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
             F  SLW+L + C+  YAA+ PF  +   F   +F  S Q+A+ +  +V+ +SA +SP+ GIL+D++G      L A I    SH+ +A T+W P +A+ LLG+ YS+ A ALWP +A V P     +AYG + +IQ
Sbjct:   51 NFSSSLWLLFVICVCYYAAVFPFIGLGKVFFIEKFQFSSQEASAINSVVYIISAPMSPVFGILVDKVGKNIIWVLCAVITTLASHIMLAFTFWNPWIAMCLLGVAYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQ 187          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A8D2J8M6_VARKO (Major facilitator superfamily domain containing 1 n=5 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2J8M6_VARKO)

HSP 1 Score: 108 bits (269), Expect = 6.540e-25
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   19 FPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            F LSLW++ I C+  Y AI PF  +   F   +F  S Q+A+ +  IV+ +SA +SP+ G+L+D++G      L A +   +SH  +A TYW P VA+SLLG+ YS+ A ALWP +A V P     +AYG + +IQ
Sbjct:  262 FSLSLWLIFIICVCYYVAIFPFIGLGKVFFIEKFKFSSQEASAINSIVYVISAPMSPVFGLLVDKVGRNITWVLCAVVTTLVSHNMLAFTYWNPWVAMSLLGVSYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQ 397          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A388LCA7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LCA7_CHABU)

HSP 1 Score: 108 bits (270), Expect = 8.490e-25
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   34 WILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            W+L ISC+  Y+A+LPFNNIA + L T++  +      L+ I + ++ + SP LGI ID  G RA L ++A++ +  +HL +A TY  PA++L+ +G  YSVYA+A+WPS+ALV   +    AYG++TA Q
Sbjct:  304 WLLTISCVVLYSAVLPFNNIAGELLMTKWGLTLDKTGFLISIPYLIAVLASPFLGIAIDLFGCRAALLVLASLALLFTHLSIAFTYINPAISLTTMGFAYSVYASAIWPSVALVVDSSALGLAYGLITASQ 434          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A0G4J680_PLABS (MFS domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J680_PLABS)

HSP 1 Score: 107 bits (268), Expect = 9.320e-25
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    4 RAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
             ++ K PL  W+L  SC+  Y+ ILPFN++A   L  R   S   A L M I F++SA+ SP LG LID +G R      +A L+  +H   AAT W P   L ++G  YS++AAA+WP +A+V    Y  +AYG+ TAIQ
Sbjct:  251 ESVSKMPLIFWLLCGSCVVVYSTILPFNDVAEALLEQRNGYSSALAVLYMSIPFTISALTSPFLGALIDNVGKRGICLTASAALLVFAHATFAATSWSPLFPLIMMGAAYSIFAAAIWPCVAIVVDQEYLGTAYGIATAIQ 391          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A7L2IFC4_9PICI (MFSD1 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2IFC4_9PICI)

HSP 1 Score: 104 bits (259), Expect = 1.770e-24
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   19 FPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
            F LSLW++ + C+  YAAI PF  +   F   +F  S Q+A+ +  IV+ +SA +SP+ G+L+D++G      L A +    SH+ +A T+W P +A+ LLG+ YS+ A ALWP +A V P     +AYG + +IQ
Sbjct:   79 FSLSLWLIFVICVCYYAAIFPFIGLGKVFFIEKFKFSPQEASAINSIVYIISAPMSPVFGLLVDKLGKNIIWVLWAVVTTLASHIMLAFTFWNPWIAMCLLGVAYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQ 214          
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Match: A0A8C3LJK4_CHRPC (Major facilitator superfamily domain containing 1 n=1 Tax=Chrysolophus pictus TaxID=9089 RepID=A0A8C3LJK4_CHRPC)

HSP 1 Score: 106 bits (264), Expect = 1.830e-24
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   16 KFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLLMMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPPAVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ 426
             F LSLW++ + C+  YAA+ PF  +   F   +F  S Q+A+ +  +V+ +SA +SPI GIL+D+IG      L A +    SH+ +A T+W P +A+ LLG+ YS+ A ALWP +A V P     +AYG + +IQ
Sbjct:  188 NFSLSLWLIFVICVCYYAAVFPFIGLGKVFFIEKFQFSSQEASAINSVVYIISAPMSPIFGILVDKIGKNIIWVLCAVVTTLASHIMLAFTFWNPWIAMCLLGVAYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQ 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118369.3802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8BYI6_CAFRO1.570e-2950.00MFS domain-containing protein n=3 Tax=Sar TaxID=26... [more]
A0A7S0JZD1_CAFRO1.940e-2950.00Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S2S3K0_9STRA4.280e-2641.14Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2G8KW57_STIJA3.170e-2538.73Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A2P4SEJ7_BAMTH4.930e-2539.42Uncharacterized protein n=2 Tax=Neognathae TaxID=8... [more]
A0A8D2J8M6_VARKO6.540e-2541.91Major facilitator superfamily domain containing 1 ... [more]
A0A388LCA7_CHABU8.490e-2543.51Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A0G4J680_PLABS9.320e-2542.55MFS domain-containing protein n=1 Tax=Plasmodiopho... [more]
A0A7L2IFC4_9PICI1.770e-2439.71MFSD1 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
A0A8C3LJK4_CHRPC1.830e-2440.15Major facilitator superfamily domain containing 1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118369contigM-pyrifera_M_contig118369:2..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score103.2
Seed ortholog evalue1e-19
Seed eggNOG ortholog9031.ENSGALP00000015616
Preferred nameMFSD1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Major facilitator superfamily
EggNOG OGs38NCS@33154,3BE5V@33208,3D0CK@33213,480NU@7711,49647@7742,4GSP9@8782,COG0477@1,KOG4686@2759
COG Functional cat.G
Best tax levelAves
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.2602985-CDS-M-pyrifera_M_contig118369:1..4271622815703.2602985-CDS-M-pyrifera_M_contig118369:1..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118369 2..427 +
1692277529.702829-CDS-M-pyrifera_M_contig118369:1..4271692277529.702829-CDS-M-pyrifera_M_contig118369:1..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118369 2..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118369.3802.1prot_M-pyrifera_M_contig118369.3802.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118369 2..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118369.3802.1

>prot_M-pyrifera_M_contig118369.3802.1 ID=prot_M-pyrifera_M_contig118369.3802.1|Name=mRNA_M-pyrifera_M_contig118369.3802.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
YRAIFKFPLSLWILAISCLSTYAAILPFNNIASQFLYTRFSTSKQDANLL
MMIVFSVSAVLSPILGILIDRIGHRANLALMAAILITLSHLYMAATYWPP
AVALSLLGIGYSVYAAALWPSIALVTPPAYHSSAYGVVTAIQ
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mRNA from alignment at M-pyrifera_M_contig118369:2..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118369.3802.1 ID=mRNA_M-pyrifera_M_contig118369.3802.1|Name=mRNA_M-pyrifera_M_contig118369.3802.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig118369:2..427+ (Macrocystis pyrifera P11B4 male)
TATCGCGCGATTTTCAAGTTCCCACTTTCGCTGTGGATTTTGGCCATTTC TTGTCTGTCGACATACGCTGCGATTTTGCCTTTCAACAACATTGCGTCGC AGTTCCTGTACACGCGCTTCTCCACCTCGAAGCAGGACGCCAACTTGCTC ATGATGATCGTGTTCAGCGTTTCCGCCGTCCTCAGCCCCATCCTGGGCAT TCTCATCGACCGCATCGGCCACCGCGCAAACCTGGCCTTGATGGCCGCCA TCCTCATCACGCTCTCCCACCTCTACATGGCAGCCACTTACTGGCCACCC GCCGTCGCCCTCTCCCTCCTCGGCATCGGCTACTCGGTCTACGCAGCAGC GCTGTGGCCCTCCATCGCCCTCGTCACCCCACCAGCGTACCACTCCTCAG CATACGGAGTCGTCACCGCCATCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118369:2..427+

>mRNA_M-pyrifera_M_contig118369.3802.1 ID=mRNA_M-pyrifera_M_contig118369.3802.1|Name=mRNA_M-pyrifera_M_contig118369.3802.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig118369:2..427+ (Macrocystis pyrifera P11B4 male)
TATCGCGCGATTTTCAAGTTCCCACTTTCGCTGTGGATTTTGGCCATTTC
TTGTCTGTCGACATACGCTGCGATTTTGCCTTTCAACAACATTGCGTCGC
AGTTCCTGTACACGCGCTTCTCCACCTCGAAGCAGGACGCCAACTTGCTC
ATGATGATCGTGTTCAGCGTTTCCGCCGTCCTCAGCCCCATCCTGGGCAT
TCTCATCGACCGCATCGGCCACCGCGCAAACCTGGCCTTGATGGCCGCCA
TCCTCATCACGCTCTCCCACCTCTACATGGCAGCCACTTACTGGCCACCC
GCCGTCGCCCTCTCCCTCCTCGGCATCGGCTACTCGGTCTACGCAGCAGC
GCTGTGGCCCTCCATCGCCCTCGTCACCCCACCAGCGTACCACTCCTCAG
CATACGGAGTCGTCACCGCCATCCAATATCGCGCGATTTTCAAGTTCCCA
CTTTCGCTGTGGATTTTGGCCATTTCTTGTCTGTCGACATACGCTGCGAT
TTTGCCTTTCAACAACATTGCGTCGCAGTTCCTGTACACGCGCTTCTCCA
CCTCGAAGCAGGACGCCAACTTGCTCATGATGATCGTGTTCAGCGTTTCC
GCCGTCCTCAGCCCCATCCTGGGCATTCTCATCGACCGCATCGGCCACCG
CGCAAACCTGGCCTTGATGGCCGCCATCCTCATCACGCTCTCCCACCTCT
ACATGGCAGCCACTTACTGGCCACCCGCCGTCGCCCTCTCCCTCCTCGGC
ATCGGCTACTCGGTCTACGCAGCAGCGCTGTGGCCCTCCATCGCCCTCGT
CACCCCACCAGCGTACCACTCCTCAGCATACGGAGTCGTCACCGCCATCC
AA
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