mRNA_M-pyrifera_M_contig118349.3794.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118349.3794.1
Unique NamemRNA_M-pyrifera_M_contig118349.3794.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118349.3794.1 vs. uniprot
Match: A5A9V2_CIOIN (Huntingtin like protein n=4 Tax=Ciona TaxID=7718 RepID=A5A9V2_CIOIN)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-7
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   64 VETLLDVITQGVKDSSTVTSNEACRAIEVVLPYLYTSPYSIHVLSIVSALTSFEHS-YWLIRCSVMQLLAKLDYSSIAYVEKEFLHNRGSRALPLYRDHQPLQERALNYIVKQLEDDNWRVADAA 435
            +E L+ +I  G+ D S+ T+ +AC A+   +  L  S Y  + L ++  +   + S YWLI+ S+++LLA L+Y  IAY+E   L  R + ++      Q L  +AL+  +K L DD+ R+   A
Sbjct:  589 IEDLISLIHGGLIDESSTTTRQACSAVTSCVHTLLNSMYFSYGLELLHMVVGLQSSTYWLIKVSLLELLASLNYRQIAYLE--LLSKRDAASVKT----QSLPHQALSIALKCLCDDDLRLRKTA 707
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BLAST of mRNA_M-pyrifera_M_contig118349.3794.1 vs. uniprot
Match: UPI00106BCF43 (LOW QUALITY PROTEIN: huntingtin-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BCF43)

HSP 1 Score: 58.5 bits (140), Expect = 3.650e-7
Identity = 34/108 (31.48%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 VIQSHFDIRR---DQC-LLSDQYVHVETLLDVITQGVKDSSTVTSNEACRAIEVVLPYLYTSPYSIHVLSIVSALTSF-EHSYWLIRCSVMQLLAKLDYSSIAYVEKE 309
            +++S +D      D C  L+  +V ++ LL V+ + + D S+ T   AC  ++  LP L  S Y+   L +   L    ++SYWL++C ++Q++  L+YS IA++EK+
Sbjct:  624 LVRSRYDFETWSSDVCDQLNTDHVKIDDLLGVLEKILLDDSSFTVKLACLGVQQCLPALCLSSYTTLTLQLCLKLVRLKQNSYWLVKCELLQIIGNLNYSLIAFLEKQ 731
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118349.3794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A5A9V2_CIOIN1.450e-732.80Huntingtin like protein n=4 Tax=Ciona TaxID=7718 R... [more]
UPI00106BCF433.650e-731.48LOW QUALITY PROTEIN: huntingtin-like n=1 Tax=Dendr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118349contigM-pyrifera_M_contig118349:3..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.880624-CDS-M-pyrifera_M_contig118349:2..4371622815702.880624-CDS-M-pyrifera_M_contig118349:2..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118349 3..437 -
1692277529.558112-CDS-M-pyrifera_M_contig118349:2..4371692277529.558112-CDS-M-pyrifera_M_contig118349:2..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118349 3..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118349.3794.1prot_M-pyrifera_M_contig118349.3794.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118349 3..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118349.3794.1

>prot_M-pyrifera_M_contig118349.3794.1 ID=prot_M-pyrifera_M_contig118349.3794.1|Name=mRNA_M-pyrifera_M_contig118349.3794.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VIQSHFDIRRDQCLLSDQYVHVETLLDVITQGVKDSSTVTSNEACRAIEV
VLPYLYTSPYSIHVLSIVSALTSFEHSYWLIRCSVMQLLAKLDYSSIAYV
EKEFLHNRGSRALPLYRDHQPLQERALNYIVKQLEDDNWRVADAA
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mRNA from alignment at M-pyrifera_M_contig118349:3..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118349.3794.1 ID=mRNA_M-pyrifera_M_contig118349.3794.1|Name=mRNA_M-pyrifera_M_contig118349.3794.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig118349:3..437- (Macrocystis pyrifera P11B4 male)
GTGATACAGTCACACTTCGACATTCGGCGCGACCAGTGCCTCCTCAGCGA
TCAATACGTTCATGTGGAGACGCTTCTTGATGTCATAACACAGGGGGTCA
AGGATTCGAGCACAGTGACGAGCAACGAAGCCTGTAGAGCAATCGAGGTG
GTTCTGCCGTACCTCTACACAAGCCCGTACTCGATTCACGTGCTTTCCAT
TGTCTCCGCCCTCACGAGCTTCGAGCACTCGTATTGGTTGATCCGCTGCA
GTGTGATGCAGCTTTTGGCCAAATTGGACTACAGCTCTATTGCATATGTG
GAGAAAGAGTTCCTCCACAACCGAGGTTCCAGAGCACTTCCCCTCTACCG
TGACCACCAGCCCTTGCAGGAGCGTGCTCTCAACTACATCGTCAAGCAAC
TGGAGGATGACAACTGGCGAGTTGCAGACGCGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118349:3..437-

>mRNA_M-pyrifera_M_contig118349.3794.1 ID=mRNA_M-pyrifera_M_contig118349.3794.1|Name=mRNA_M-pyrifera_M_contig118349.3794.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig118349:3..437- (Macrocystis pyrifera P11B4 male)
GTGATACAGTCACACTTCGACATTCGGCGCGACCAGTGCCTCCTCAGCGA
TCAATACGTTCATGTGGAGACGCTTCTTGATGTCATAACACAGGGGGTCA
AGGATTCGAGCACAGTGACGAGCAACGAAGCCTGTAGAGCAATCGAGGTG
GTTCTGCCGTACCTCTACACAAGCCCGTACTCGATTCACGTGCTTTCCAT
TGTCTCCGCCCTCACGAGCTTCGAGCACTCGTATTGGTTGATCCGCTGCA
GTGTGATGCAGCTTTTGGCCAAATTGGACTACAGCTCTATTGCATATGTG
GAGAAAGAGTTCCTCCACAACCGAGGTTCCAGAGCACTTCCCCTCTACCG
TGACCACCAGCCCTTGCAGGAGCGTGCTCTCAACTACATCGTCAAGCAAC
TGGAGGATGACAACTGGCGAGTTGCAGACGCGGCAGTGATACAGTCACAC
TTCGACATTCGGCGCGACCAGTGCCTCCTCAGCGATCAATACGTTCATGT
GGAGACGCTTCTTGATGTCATAACACAGGGGGTCAAGGATTCGAGCACAG
TGACGAGCAACGAAGCCTGTAGAGCAATCGAGGTGGTTCTGCCGTACCTC
TACACAAGCCCGTACTCGATTCACGTGCTTTCCATTGTCTCCGCCCTCAC
GAGCTTCGAGCACTCGTATTGGTTGATCCGCTGCAGTGTGATGCAGCTTT
TGGCCAAATTGGACTACAGCTCTATTGCATATGTGGAGAAAGAGTTCCTC
CACAACCGAGGTTCCAGAGCACTTCCCCTCTACCGTGACCACCAGCCCTT
GCAGGAGCGTGCTCTCAACTACATCGTCAAGCAACTGGAGGATGACAACT
GGCGAGTTGCAGACGCGGCA
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