mRNA_M-pyrifera_M_contig118273.3781.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118273.3781.1
Unique NamemRNA_M-pyrifera_M_contig118273.3781.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 9.560e-41
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   25 GTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRGVA 294
            GTHTDTTF T IPCASAPGLEI+QPS+GRWVRPEA+ +CRPG+D+MLLAGELLQVFG G  YQAAVHRVVRP    EPRVSTPLL+RGVA
Sbjct:  158 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGR-YQAAVHRVVRPAGSTEPRVSTPLLLRGVA 246          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 3.740e-40
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   25 GTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRGVA 294
            GTHTDTTF T IPCASAPGLEI+QPS+GRWVRPEA+ +CRPG+D+MLLAGELLQVFG G  YQAAVHRVVRP    EPRVSTPLL+RG+A
Sbjct:  307 GTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGR-YQAAVHRVVRPAGSTEPRVSTPLLLRGIA 395          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A7S4D4K1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K1_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 4.880e-22
Identity = 52/87 (59.77%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   25 GTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVR 285
            G HTDTTF T IPC++ PGLE+  P+   WVRPE A  CRPG DI++L GELLQV    G Y AAVHRVV        RVS PLLVR
Sbjct:    9 GAHTDTTFVTLIPCSNIPGLEVFSPALDGWVRPEPA--CRPGRDIIILPGELLQVLS-AGHYPAAVHRVVSVGGGTA-RVSAPLLVR 91          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A7S4JAE6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JAE6_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 2.220e-16
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   31 HTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRGVA 294
            HTD T+FT IPCA+ PGLE+   +   WV PE  D    G  +M+L GE LQ+  +G  Y AA+HRVVRP     PR+S PLL+RG A
Sbjct:  189 HTDGTWFTVIPCAAVPGLEVFASAEHGWVSPER-DAAATGRMVMVLTGEFLQLLSDGE-YTAALHRVVRPLG-DAPRLSAPLLMRGSA 273          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A7S3ZL26_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL26_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.240e-14
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   25 GTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLA--GELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRGVAR 297
            G HTDT+FFT +P A  PGLE+L PS  RWV PEA D    G   ++LA  GE L+V   G  +QA+VHRV       E RVSTPLLVR   R
Sbjct:  224 GAHTDTSFFTLVPFARVPGLEVLDPSLQRWVCPEA-DTPSKGEGHLVLAMPGEFLEVASHGS-FQASVHRV---RGGSEKRVSTPLLVRADLR 311          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A1Z5J8Q8_FISSO (2OG-FeII_Oxy domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8Q8_FISSO)

HSP 1 Score: 67.0 bits (162), Expect = 7.770e-11
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   25 GTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEA---ADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRG 288
            G HTD+TF TA+P A+ PGLE+   ++ RW RPEA   + +CR    ++L+ GE LQ+        A+VHRVV      E R S PLL+RG
Sbjct:  497 GAHTDSTFITAVPVATVPGLEVYDEAAERWYRPEALLTSSHCRY---VVLVPGEFLQLLTRQE-ILASVHRVVVGA---EQRFSAPLLLRG 580          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: A0A7S4J017_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J017_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-8
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   31 HTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMP-EPRVSTPLLVRG 288
            HTD T+FT IPCA  PGLE+   S   W   E  +  R G D+ +L+G+ L+    G  Y+A+ HRV  P +     R S PLL+R 
Sbjct:   76 HTDGTWFTVIPCAKQPGLEVRTASG--WCSVE--EQSRHGIDVAVLSGDFLESLSNGK-YKASSHRVALPASAGVAARSSAPLLMRA 157          
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Match: F0YG17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG17_AURAN)

HSP 1 Score: 51.2 bits (121), Expect = 2.510e-5
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    4 SSQTPLSGTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPGADIMLL-AGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRG 288
            S +TP    HTD TF T  P +  PGLE    ++  W  P AA +     D+ ++ AG LL++      + A VHRVV     PEPR STPLL+RG
Sbjct:  207 SDETPFDA-HTDATFLTVAPFS--PGLEFYDGAA--WHAPRAAAD----DDLAVVWAGSLLEIVD--ATFAATVHRVV---GTPEPRTSTPLLLRG 288          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118273.3781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KEM1_9PHAE9.560e-4181.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP64_ECTSI3.740e-4080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D4K1_HETAK4.880e-2259.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4JAE6_9EUKA2.220e-1651.14Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S3ZL26_9STRA1.240e-1452.69Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A1Z5J8Q8_FISSO7.770e-1145.052OG-FeII_Oxy domain-containing protein n=2 Tax=Fis... [more]
A0A7S4J017_9EUKA3.050e-841.38Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
F0YG17_AURAN2.510e-541.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118273contigM-pyrifera_M_contig118273:96..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3e-34
Seed eggNOG ortholog2880.D7FP64
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.278668-CDS-M-pyrifera_M_contig118273:95..3921622815702.278668-CDS-M-pyrifera_M_contig118273:95..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118273 96..392 +
1692277529.3324625-CDS-M-pyrifera_M_contig118273:95..3921692277529.3324625-CDS-M-pyrifera_M_contig118273:95..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118273 96..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118273.3781.1prot_M-pyrifera_M_contig118273.3781.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118273 96..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118273.3781.1

>prot_M-pyrifera_M_contig118273.3781.1 ID=prot_M-pyrifera_M_contig118273.3781.1|Name=mRNA_M-pyrifera_M_contig118273.3781.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
PSSQTPLSGTHTDTTFFTAIPCASAPGLEILQPSSGRWVRPEAADNCRPG
ADIMLLAGELLQVFGEGGGYQAAVHRVVRPENMPEPRVSTPLLVRGVAR
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mRNA from alignment at M-pyrifera_M_contig118273:96..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118273.3781.1 ID=mRNA_M-pyrifera_M_contig118273.3781.1|Name=mRNA_M-pyrifera_M_contig118273.3781.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig118273:96..392+ (Macrocystis pyrifera P11B4 male)
CCCTCCTCACAAACGCCTCTTTCAGGGACACACACGGACACGACCTTCTT CACAGCCATCCCGTGCGCGTCTGCTCCTGGGCTGGAGATCCTCCAGCCTT CCTCCGGCCGCTGGGTGCGACCGGAGGCCGCCGACAACTGCAGGCCGGGC GCCGACATCATGCTGCTCGCGGGGGAGCTGCTTCAGGTGTTCGGCGAGGG GGGGGGCTACCAGGCCGCCGTTCACCGCGTCGTCCGCCCGGAAAATATGC CAGAGCCTCGGGTTTCCACCCCCCTTCTGGTGCGTGGAGTGGCGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118273:96..392+

>mRNA_M-pyrifera_M_contig118273.3781.1 ID=mRNA_M-pyrifera_M_contig118273.3781.1|Name=mRNA_M-pyrifera_M_contig118273.3781.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig118273:96..392+ (Macrocystis pyrifera P11B4 male)
CCCTCCTCACAAACGCCTCTTTCAGGGACACACACGGACACGACCTTCTT
CACAGCCATCCCGTGCGCGTCTGCTCCTGGGCTGGAGATCCTCCAGCCTT
CCTCCGGCCGCTGGGTGCGACCGGAGGCCGCCGACAACTGCAGGCCGGGC
GCCGACATCATGCTGCTCGCGGGGGAGCTGCTTCAGGTGTTCGGCGAGGG
GGGGGGCTACCAGGCCGCCGTTCACCGCGTCGTCCGCCCGGAAAATATGC
CAGAGCCTCGGGTTTCCACCCCCCTTCTGGTGCGTGGAGTGGCGCGTCCC
TCCTCACAAACGCCTCTTTCAGGGACACACACGGACACGACCTTCTTCAC
AGCCATCCCGTGCGCGTCTGCTCCTGGGCTGGAGATCCTCCAGCCTTCCT
CCGGCCGCTGGGTGCGACCGGAGGCCGCCGACAACTGCAGGCCGGGCGCC
GACATCATGCTGCTCGCGGGGGAGCTGCTTCAGGTGTTCGGCGAGGGGGG
GGGCTACCAGGCCGCCGTTCACCGCGTCGTCCGCCCGGAAAATATGCCAG
AGCCTCGGGTTTCCACCCCCCTTCTGGTGCGTGGAGTGGCGCGT
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