mRNA_M-pyrifera_M_contig118234.3778.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118234.3778.1
Unique NamemRNA_M-pyrifera_M_contig118234.3778.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7Y5CE77_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CE77_9BACT)

HSP 1 Score: 172 bits (437), Expect = 8.490e-48
Identity = 103/188 (54.79%), Postives = 119/188 (63.30%), Query Frame = 1
Query:    1 NNRSREITDPETGLPNISSGSTAPDG-----GPGYQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            NNR+REI  PE G    + G           G  Y  DINGDG+ E IP Y +PDGTNV NNTIT  ++ A ANPG A      F+L+  + DN DGD V VT+DYLNSL ETELLSAPRVTT+NRKPAVIAD LTQ+F TSA S + A     G      ++T +   QF FGIT SVTPQISG NQ
Sbjct:  263 NNRAREI--PELGEQTTTGGGXXXXXXXTTTGVTYPVDINGDGITEDIPIYTKPDGTNVFNNTITSAVLDAVANPGPAGE----FNLAATILDNADGDVVSVTMDYLNSLAETELLSAPRVTTLNRKPAVIADILTQTFNTSATSIIVASDNAFGSSGTLAATTILQFTQFTFGITLSVTPQISGGNQ 444          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A831UKF7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831UKF7_9BACT)

HSP 1 Score: 162 bits (411), Expect = 1.200e-44
Identity = 84/154 (54.55%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            YQ+DINGDG +E IPFY RPDG+++I NTI++G++ A ++PG    D   FS  GI+TDN DGD++ VT DYLNSL+E+ELLSAPRVTTMN KPAVIAD  T+ FVT+ ++ +    G  GG +      Q  P+ F FGIT SVTP + G +Q
Sbjct:  206 YQYDINGDGFMEIIPFYQRPDGSSIITNTISEGIIRAASSPGPP-GD---FSFEGIITDNEDGDKLRVTFDYLNSLDESELLSAPRVTTMNNKPAVIADITTEYFVTAVYTRLFVTPGTWGGDSTMGYEQQPFPQDFHFGITLSVTPYVCGGDQ 355          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7C3X419_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3X419_9BACT)

HSP 1 Score: 159 bits (401), Expect = 7.600e-43
Identity = 82/156 (52.56%), Postives = 105/156 (67.31%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGA--AAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            Y +DINGDGV E +PFY RPDG+NV+ N++TQG +S   NP    A     +L   + DN DGD++GV  DYLNSL E+ELLSAPRVTTMNRKPAV+ADF T+ ++T  +++V    GG GG    + +S  Q  P  F FGI  SVTPQI  ++Q
Sbjct:  248 YSYDINGDGVDEEVPFYTRPDGSNVVRNSVTQGTISGLVNPPAPAAAASTLNLVTKIIDNADGDQLGVVFDYLNSLRESELLSAPRVTTMNRKPAVVADFQTEYYLTQVYNEVYVSEGGFGGSQTQSVISQPQFSP--FNFGIALSVTPQIRDNDQ 401          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A1V6EU24_9BACT (Type IV pilus biogenesis and competence protein PilQ n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EU24_9BACT)

HSP 1 Score: 157 bits (396), Expect = 2.100e-42
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 1
Query:   79 GPGYQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSG-GLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            G  Y +DINGDGV E IPFY+RPDGT  I NTIT  ++S   NP  + +    FS+ G + DN DGD++ VT DYL+ LEE+ELLSAPRVTTMNRKPAVIADF T+ FV+S  ++V    G G   GA+      ++P+ + FGI  SVTPQI  +NQ
Sbjct:  204 GESYYYDINGDGVDEQIPFYSRPDGTPTITNTITDAVISGLINPTASASPT--FSILGNILDNADGDKLSVTFDYLDGLEESELLSAPRVTTMNRKPAVIADFATEYFVSSVSTEVYNNLGYGYSSGASTSFVQNVVPQPYNFGIALSVTPQIRDNNQ 359          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7V2TT02_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2TT02_9BACT)

HSP 1 Score: 156 bits (394), Expect = 2.500e-42
Identity = 79/155 (50.97%), Postives = 110/155 (70.97%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDV-QAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            Y +DINGDG+ ET+PFY RPDG++V NNT T   +    NP    A    FS+ G + ++GDGD++ +TLDYL+S+ E+ELLSAPRVTTMNRKPAVIADF T+ +V++ ++D+ Q   GG+ GG       ++IP+ + FGI+ SVTPQI  ++Q
Sbjct:  169 YNYDINGDGIDETVPFYTRPDGSSVFNNTFTDATIGGLINPASTGAPT--FSILGNIINSGDGDKLSLTLDYLDSIGESELLSAPRVTTMNRKPAVIADFTTEYYVSAIYTDIYQNYYGGVSGGNTTNFINRLIPQSYNFGISLSVTPQIRDNDQ 321          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7V3DHR8_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V3DHR8_9BACT)

HSP 1 Score: 159 bits (403), Expect = 6.010e-42
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = 1
Query:   97 DINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVG-FSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            DINGDGV E IPFY+RPDGT++I NTI    ++AFA+PG       G FSL+G+LT+N DGD   V  DYL++LEE+ELLSAPRVTTMNRKPAVIAD  ++ +V    +++ + +G LG       +  ++P +F FGIT SVTPQISG +Q
Sbjct:  697 DINGDGVAEPIPFYSRPDGTSIITNTIASAAMAAFASPGAQTGVNPGSFSLTGVLTNNKDGDNATVAFDYLSTLEESELLSAPRVTTMNRKPAVIADLSSEYYVAEVRTELVSTTGNLGSSGNIGYTQSVMPTRFDFGITLSVTPQISGSDQ 848          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7C4UU27_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4UU27_9BACT)

HSP 1 Score: 155 bits (393), Expect = 1.340e-40
Identity = 81/154 (52.60%), Postives = 100/154 (64.94%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            Y +DINGDGV E +PFY RPDG+ VI N+IT G +S   NP    A     SL   + DN DGD++ V  DYLNSL E+ELLSAPRVTTMNRKPAV+ADF T+ ++T  +++V    GG GG       TQ +   F FGI  SVTPQI  ++Q
Sbjct:  800 YSYDINGDGVDEEVPFYVRPDGSQVIRNSITSGTISGLVNPPAPAAAASTLSLVTKIIDNADGDKLSVAFDYLNSLRESELLSAPRVTTMNRKPAVVADFQTEYYLTQVYNEVYLTEGGFGGSQTQSVITQPMFSPFNFGIALSVTPQIRDNDQ 953          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A1V5YRY1_9BACT (Type IV pilus biogenesis and competence protein PilQ n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YRY1_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.420e-40
Identity = 81/155 (52.26%), Postives = 104/155 (67.10%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSG-GLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            Y +DINGDG  E IPFY RPDG  VI+NTIT   ++   NP  +      F++ G + +N DGD++ +T DYL+ LEE+ELLSAPRVTTMNRKPA+IADF T+ FV+S  + V A +G G+GG A       I+P  + FGI  SVTPQI  +NQ
Sbjct:  198 YYYDINGDGKDEAIPFYTRPDGKPVISNTITDSTIAGLVNPVASAPST--FNIVGNILNNADGDKLSLTFDYLDGLEESELLSAPRVTTMNRKPAIIADFATEYFVSSVDTQVYAFAGSGIGGNAMTSFVQNIVPSAYNFGIALSVTPQIRDNNQ 350          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A7C3AB71_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3AB71_9BACT)

HSP 1 Score: 150 bits (378), Expect = 7.700e-40
Identity = 81/154 (52.60%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   88 YQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            Y +D+N DGV E +PFY+RPDG++VI NTIT+G ++   NP  A A    F   G +  N DGD +GV  D+L+SL E+ELLSAPRVTTMNRKPAVIADF T+ FV S  + V     G GG         I P  F FGI FSVTPQI  ++Q
Sbjct:  189 YDYDVNADGVDEPVPFYSRPDGSSVIRNTITEGTLAGLVNPAAAGAQPT-FQFLGKILQNRDGDSLGVAFDFLDSLTESELLSAPRVTTMNRKPAVIADFATEYFVASIDTQVFTSEAGFGGTPVTSYVQNITPVSFNFGIAFSVTPQIRDNDQ 341          
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Match: A0A1V6ETR7_9BACT (Type IV pilus biogenesis and competence protein PilQ n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6ETR7_9BACT)

HSP 1 Score: 153 bits (386), Expect = 1.150e-39
Identity = 93/190 (48.95%), Postives = 116/190 (61.05%), Query Frame = 1
Query:    1 NNRSREITDPETGLPNISSGST------APDGGPGYQFDINGDGVLETIPFYNRPDGTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLDYLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSG-GLGGGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ 549
            N+R R+I    TG    +SGST          G  Y +D+NGDG  E IPFY RPDGT  I NTIT  ++S   NP  +      FS+ G + +N DGD++ VT DYL+ LEE+ELLSAPRVTTMNRKPAVIADF T+ FV+S  ++V    G GL  GA       + P+ + FGI  SVTPQI  +NQ
Sbjct:  708 NSRERQIETLGTG----TSGSTDTXXXXXXTSGESYYYDVNGDGTDEQIPFYTRPDGTPTITNTITDAVISGLVNPTASAPST--FSILGNILENADGDKLSVTFDYLDGLEESELLSAPRVTTMNRKPAVIADFATEYFVSSVNTEVYNNLGYGLSTGATTSFVQNVTPQPYNFGIALSVTPQIRDNNQ 891          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118234.3778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7Y5CE77_9BACT8.490e-4854.79Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A831UKF7_9BACT1.200e-4454.55Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3X419_9BACT7.600e-4352.56Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V6EU24_9BACT2.100e-4253.80Type IV pilus biogenesis and competence protein Pi... [more]
A0A7V2TT02_9BACT2.500e-4250.97Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V3DHR8_9BACT6.010e-4254.61Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A7C4UU27_9BACT1.340e-4052.60Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A1V5YRY1_9BACT1.420e-4052.26Type IV pilus biogenesis and competence protein Pi... [more]
A0A7C3AB71_9BACT7.700e-4052.60Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V6ETR7_9BACT1.150e-3948.95Type IV pilus biogenesis and competence protein Pi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118234contigM-pyrifera_M_contig118234:2..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.0718656-CDS-M-pyrifera_M_contig118234:1..5501622815702.0718656-CDS-M-pyrifera_M_contig118234:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118234 2..550 -
1692277529.2175496-CDS-M-pyrifera_M_contig118234:1..5501692277529.2175496-CDS-M-pyrifera_M_contig118234:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118234 2..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118234.3778.1prot_M-pyrifera_M_contig118234.3778.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118234 2..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118234.3778.1

>prot_M-pyrifera_M_contig118234.3778.1 ID=prot_M-pyrifera_M_contig118234.3778.1|Name=mRNA_M-pyrifera_M_contig118234.3778.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
NNRSREITDPETGLPNISSGSTAPDGGPGYQFDINGDGVLETIPFYNRPD
GTNVINNTITQGLVSAFANPGRAVADGVGFSLSGILTDNGDGDRVGVTLD
YLNSLEETELLSAPRVTTMNRKPAVIADFLTQSFVTSAFSDVQAVSGGLG
GGAAAVSSTQIIPEQFIFGITFSVTPQISGDNQ
back to top

mRNA from alignment at M-pyrifera_M_contig118234:2..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118234.3778.1 ID=mRNA_M-pyrifera_M_contig118234.3778.1|Name=mRNA_M-pyrifera_M_contig118234.3778.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig118234:2..550- (Macrocystis pyrifera P11B4 male)
AATAACCGGAGTCGAGAAATCACCGATCCGGAAACGGGTCTGCCCAACAT TTCTTCTGGGTCGACGGCACCTGATGGTGGACCGGGCTACCAGTTCGATA TCAATGGCGATGGCGTTCTGGAGACGATTCCGTTCTATAATCGGCCTGAT GGCACCAATGTCATCAACAACACGATTACGCAAGGACTCGTTAGTGCGTT TGCCAATCCCGGTCGTGCGGTTGCCGATGGCGTCGGATTTTCGTTATCCG GCATTCTGACGGATAACGGCGATGGTGACCGCGTTGGCGTTACGCTGGAT TATCTCAACAGCTTGGAGGAAACCGAGCTGTTGAGTGCGCCGCGGGTCAC GACGATGAATCGTAAACCTGCTGTTATCGCTGACTTCTTGACGCAATCGT TCGTAACATCGGCCTTTTCCGATGTTCAGGCGGTGAGCGGTGGATTGGGC GGTGGCGCGGCTGCGGTCTCTTCGACGCAGATTATCCCGGAACAGTTCAT CTTTGGTATTACGTTCTCGGTGACTCCGCAGATCAGCGGCGACAATCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118234:2..550-

>mRNA_M-pyrifera_M_contig118234.3778.1 ID=mRNA_M-pyrifera_M_contig118234.3778.1|Name=mRNA_M-pyrifera_M_contig118234.3778.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig118234:2..550- (Macrocystis pyrifera P11B4 male)
AATAACCGGAGTCGAGAAATCACCGATCCGGAAACGGGTCTGCCCAACAT
TTCTTCTGGGTCGACGGCACCTGATGGTGGACCGGGCTACCAGTTCGATA
TCAATGGCGATGGCGTTCTGGAGACGATTCCGTTCTATAATCGGCCTGAT
GGCACCAATGTCATCAACAACACGATTACGCAAGGACTCGTTAGTGCGTT
TGCCAATCCCGGTCGTGCGGTTGCCGATGGCGTCGGATTTTCGTTATCCG
GCATTCTGACGGATAACGGCGATGGTGACCGCGTTGGCGTTACGCTGGAT
TATCTCAACAGCTTGGAGGAAACCGAGCTGTTGAGTGCGCCGCGGGTCAC
GACGATGAATCGTAAACCTGCTGTTATCGCTGACTTCTTGACGCAATCGT
TCGTAACATCGGCCTTTTCCGATGTTCAGGCGGTGAGCGGTGGATTGGGC
GGTGGCGCGGCTGCGGTCTCTTCGACGCAGATTATCCCGGAACAGTTCAT
CTTTGGTATTACGTTCTCGGTGACTCCGCAGATCAGCGGCGACAATCAGA
ATAACCGGAGTCGAGAAATCACCGATCCGGAAACGGGTCTGCCCAACATT
TCTTCTGGGTCGACGGCACCTGATGGTGGACCGGGCTACCAGTTCGATAT
CAATGGCGATGGCGTTCTGGAGACGATTCCGTTCTATAATCGGCCTGATG
GCACCAATGTCATCAACAACACGATTACGCAAGGACTCGTTAGTGCGTTT
GCCAATCCCGGTCGTGCGGTTGCCGATGGCGTCGGATTTTCGTTATCCGG
CATTCTGACGGATAACGGCGATGGTGACCGCGTTGGCGTTACGCTGGATT
ATCTCAACAGCTTGGAGGAAACCGAGCTGTTGAGTGCGCCGCGGGTCACG
ACGATGAATCGTAAACCTGCTGTTATCGCTGACTTCTTGACGCAATCGTT
CGTAACATCGGCCTTTTCCGATGTTCAGGCGGTGAGCGGTGGATTGGGCG
GTGGCGCGGCTGCGGTCTCTTCGACGCAGATTATCCCGGAACAGTTCATC
TTTGGTATTACGTTCTCGGTGACTCCGCAGATCAGCGGCGACAATCAG
back to top