mRNA_M-pyrifera_M_contig118135.3758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118135.3758.1
Unique NamemRNA_M-pyrifera_M_contig118135.3758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A0B7NF36_9FUNG (Muskelin_N domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NF36_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 8.740e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLG-EQSITLELESPSVLQVITFGKCHK 195
            L+Y +H  SSH+  +HP N++VN+P+   SRW++     EQ IT++L+ P+V + ITFGK HK
Sbjct:  116 LSYVIHDYSSHSGTYHPQNIMVNKPTQQASRWSSGLHDHEQYITIKLDKPAVARTITFGKFHK 178
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BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A261Y4I7_9FUNG (LisH domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y4I7_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-9
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLGE-QSITLELESPSVLQVITFGKCHK 195
            +AY +HS SSH+ ++HP N++V++P++  SRW++ T  + Q + L+LE  SV+  ITFGK HK
Sbjct:  225 IAYTIHSYSSHSADYHPRNIMVDQPNDQSSRWSSGTNNQMQFVMLKLEKVSVVHSITFGKYHK 287
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BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A0C9MM96_9FUNG (Muskelin n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MM96_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-9
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLG-EQSITLELESPSVLQVITFGKCHK 195
            L Y +H  SSH+ ++HP+N++VN+P+   SRW++     EQ IT++ E P V + ITFGK HK
Sbjct:  118 LPYTIHDYSSHSGSYHPENIMVNKPTQQASRWSSGLHDYEQFITIKFEKPIVARAITFGKFHK 180
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BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A162RBH3_MUCCL (Muskelin_N domain-containing protein n=3 Tax=Mucor TaxID=4830 RepID=A0A162RBH3_MUCCL)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-9
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLG-EQSITLELESPSVLQVITFGKCHK 195
            L Y +H  SSH+ ++HP N++VN+P+   SRW++     EQ IT++ E P V + ITFGK HK
Sbjct:  118 LPYTIHDYSSHSGSYHPQNIMVNKPTQQASRWSSGLHDHEQFITIKFEKPIVARTITFGKFHK 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A137NXB1_CONC2 (LisH domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NXB1_CONC2)

HSP 1 Score: 59.7 bits (143), Expect = 7.780e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLG-EQSITLELESPSVLQVITFGKCHK 195
            L Y +HS SSH+  F+P+N+LV+ P++  SRW+T      Q I LELE  SV+Q ITFGK +K
Sbjct:  112 LKYSIHSWSSHSSCFYPENILVDNPNDQSSRWSTGNNNLTQFIMLELEQVSVVQTITFGKYNK 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A1Y1XVQ4_9FUNG (LisH domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XVQ4_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 6.950e-8
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTT-TTLGEQSITLELESPSVLQVITFGKCHK 195
            L Y++ S SSH+ ++HP N++V+ P    SRW++ +    Q ITL+LE  SV+  ITFGK HK
Sbjct:   54 LKYEIDSWSSHSASYHPKNIMVDNPQEQSSRWSSGSNTQTQFITLKLEKLSVVHSITFGKYHK 116
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BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: UPI0010FB6BA2 (muskelin-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6BA2)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-7
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLGEQS-ITLELESPSVLQVITFGKCHK 195
            + Y++HS S+++ N+HP N+ ++ P +  SRW+++   +Q  I LEL SP++L  ITFGK  K
Sbjct:   11 IEYEIHSYSTYSSNYHPKNIKIDSPHDPSSRWSSSANDQQQFIILELNSPTILATITFGKFSK 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: UPI001CF5667F (muskelin-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF5667F)

HSP 1 Score: 54.3 bits (129), Expect = 6.210e-7
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLGE-QSITLELESPSVLQVITFGKCHK 195
            L Y +H  SSH+ ++ P NVL+N PS+  SRW++ +    Q + L+LE P++  VI FGK  K
Sbjct:   12 LTYTIHKYSSHSASYLPTNVLINNPSDQSSRWSSDSNNPPQFLILKLEKPAIAMVIKFGKYEK 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A1Y2HHQ0_9FUNG (Muskelin N-terminus-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HHQ0_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLGE-QSITLELESPSVLQVITFGKCHK 195
            L Y +HS SS A  + P ++LVN P++  SRWT+    + Q +TL L+ P++L  + FGK HK
Sbjct:   69 LKYSIHSYSSAAPAYPPQHILVNNPTDQASRWTSVASDQSQFLTLALQQPAILTHLLFGKFHK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Match: A0A2A9NZW6_9AGAR (Muskelin_N domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NZW6_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-6
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   10 LAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLG------EQSITLELESPSVLQVITFGKCHK 195
            L+Y + +++ H+  + P+N+LV+ P++H SRW++   G       Q I L LES SVLQ ITFGK  K
Sbjct:   17 LSYSIAASTPHSGQYGPENILVDNPTDHTSRWSSAYQGIAYQGVSQWILLRLESLSVLQAITFGKFMK 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118135.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A0B7NF36_9FUNG8.740e-1046.03Muskelin_N domain-containing protein n=1 Tax=Paras... [more]
A0A261Y4I7_9FUNG1.200e-946.03LisH domain-containing protein n=1 Tax=Bifiguratus... [more]
A0A0C9MM96_9FUNG1.640e-946.03Muskelin n=1 Tax=Mucor ambiguus TaxID=91626 RepID=... [more]
A0A162RBH3_MUCCL3.050e-946.03Muskelin_N domain-containing protein n=3 Tax=Mucor... [more]
A0A137NXB1_CONC27.780e-950.79LisH domain-containing protein n=1 Tax=Conidiobolu... [more]
A0A1Y1XVQ4_9FUNG6.950e-846.03LisH domain-containing protein n=1 Tax=Basidiobolu... [more]
UPI0010FB6BA21.300e-741.27muskelin-like n=1 Tax=Nylanderia fulva TaxID=61390... [more]
UPI001CF5667F6.210e-742.86muskelin-like n=2 Tax=Acropora TaxID=6127 RepID=UP... [more]
A0A1Y2HHQ0_9FUNG1.590e-642.86Muskelin N-terminus-domain-containing protein n=1 ... [more]
A0A2A9NZW6_9AGAR1.600e-642.65Muskelin_N domain-containing protein n=1 Tax=Amani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118135contigM-pyrifera_M_contig118135:256..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.7
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog27923.ML056926a-PA
Preferred nameMKLN1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001556,GO:0001726,GO:0001952,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005938,GO:0006996,GO:0007010,GO:0007154,GO:0007155,GO:0007160,GO:0007165,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008360,GO:0009987,GO:0009994,GO:0010810,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022610,GO:0023052,GO:0030029,GO:0030036,GO:0030154,GO:0030155,GO:0031252,GO:0031532,GO:0031589,GO:0032501,GO:0032502,GO:0032504,GO:0042802,GO:0042995,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051704,GO:0051716,GO:0065007,GO:0065008,GO:0071695,GO:0071840,GO:0071944,GO:0099568,GO:0120025
EggNOG free text desc.actin cytoskeleton reorganization
EggNOG OGs38E9J@33154,3BFKC@33208,KOG0752@1,KOG0752@2759,KOG2437@1,KOG2437@2759
COG Functional cat.T
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.8815105-CDS-M-pyrifera_M_contig118135:255..4211622815700.8815105-CDS-M-pyrifera_M_contig118135:255..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118135 256..421 +
1692277528.5364695-CDS-M-pyrifera_M_contig118135:255..4211692277528.5364695-CDS-M-pyrifera_M_contig118135:255..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118135 256..421 +
1622815700.8917682-CDS-M-pyrifera_M_contig118135:487..5161622815700.8917682-CDS-M-pyrifera_M_contig118135:487..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118135 488..516 +
1692277528.5506856-CDS-M-pyrifera_M_contig118135:487..5161692277528.5506856-CDS-M-pyrifera_M_contig118135:487..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118135 488..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118135.3758.1prot_M-pyrifera_M_contig118135.3758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118135 256..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118135.3758.1

>prot_M-pyrifera_M_contig118135.3758.1 ID=prot_M-pyrifera_M_contig118135.3758.1|Name=mRNA_M-pyrifera_M_contig118135.3758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MNSLAYKVHSASSHACNFHPDNVLVNEPSNHCSRWTTTTLGEQSITLELE
SPSVLQVITFGKCHK
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mRNA from alignment at M-pyrifera_M_contig118135:256..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118135.3758.1 ID=mRNA_M-pyrifera_M_contig118135.3758.1|Name=mRNA_M-pyrifera_M_contig118135.3758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig118135:256..516+ (Macrocystis pyrifera P11B4 male)
ATGAACTCCTTAGCATACAAGGTGCATTCGGCGTCGAGCCATGCGTGCAA
CTTCCACCCTGACAACGTTTTGGTGAACGAGCCGAGCAACCACTGCTCGC
GCTGGACCACCACCACCCTGGGCGAGCAGTCCATCACTCTGGAGCTCGAG
AGCCCTTCTGTGCTGCGTGAGTGCTGCTTGCCTTCGCTCTGCTGAGCTGT
GTCGCCATGGACGACACTGACACACTGGACAGAGGTCATCACCTTCGGCA
AATGCCACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118135:256..516+

>mRNA_M-pyrifera_M_contig118135.3758.1 ID=mRNA_M-pyrifera_M_contig118135.3758.1|Name=mRNA_M-pyrifera_M_contig118135.3758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig118135:256..516+ (Macrocystis pyrifera P11B4 male)
ATGAACTCCTTAGCATACAAGGTGCATTCGGCGTCGAGCCATGCGTGCAA
CTTCCACCCTGACAACGTTTTGGTGAACGAGCCGAGCAACCACTGCTCGC
GCTGGACCACCACCACCCTGGGCGAGCAGTCCATCACTCTGGAGCTCGAG
AGCCCTTCTGTGCTGCATGAACTCCTTAGCATACAAGGTGCATTCGGCGT
CGAGCCATGCGTGCAACTTCCACCCTGACAACGTTTTGGTGAACGAGCCG
AGCAACCACTGCTCGCGCTGGACCACCACCACCCTGGGCGAGCAGTCCAT
CACTCTGGAGCTCGAGAGCCCTTCTGTGCTGCAGGTCATCACCTTCGGCA
AATGCCACAAGAGGTCATCACCTTCGGCAAATGCCACAAG
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