mRNA_M-pyrifera_M_contig118133.3757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118133.3757.1
Unique NamemRNA_M-pyrifera_M_contig118133.3757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118133.3757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118133contigM-pyrifera_M_contig118133:25..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.8279316-CDS-M-pyrifera_M_contig118133:24..1701622815700.8279316-CDS-M-pyrifera_M_contig118133:24..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118133 25..170 -
1692277528.514038-CDS-M-pyrifera_M_contig118133:24..1701692277528.514038-CDS-M-pyrifera_M_contig118133:24..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118133 25..170 -
1622815700.84842-CDS-M-pyrifera_M_contig118133:218..5491622815700.84842-CDS-M-pyrifera_M_contig118133:218..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118133 219..549 -
1692277528.5255425-CDS-M-pyrifera_M_contig118133:218..5491692277528.5255425-CDS-M-pyrifera_M_contig118133:218..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118133 219..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118133.3757.1prot_M-pyrifera_M_contig118133.3757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118133 25..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118133.3757.1

>prot_M-pyrifera_M_contig118133.3757.1 ID=prot_M-pyrifera_M_contig118133.3757.1|Name=mRNA_M-pyrifera_M_contig118133.3757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
RNPPRVAESLLSLLHTYLLRETRSWSVQSNLSRRRVLNMLIQARLQEGFV
ILESSGSAQGEMTVTFAAELPVTQNDEHARASLQFQYILRSQGAAISTEF
WMDPQKGSVVRDKAVPTELRTLSSPGEVFQEIVKSLCKVDTYIVTALCTF
DRLSKHPSR
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mRNA from alignment at M-pyrifera_M_contig118133:25..549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118133.3757.1 ID=mRNA_M-pyrifera_M_contig118133.3757.1|Name=mRNA_M-pyrifera_M_contig118133.3757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig118133:25..549- (Macrocystis pyrifera P11B4 male)
AGGAATCCCCCTCGAGTTGCCGAGAGCCTTTTGTCTCTTCTGCACACGTA
CCTGCTCCGAGAGACCAGGTCATGGAGTGTGCAGAGCAATCTCTCACGGC
GGCGAGTGCTCAACATGCTCATTCAGGCAAGGCTGCAAGAGGGGTTCGTC
ATCCTCGAGAGCTCAGGCTCAGCCCAAGGCGAGATGACAGTGACTTTTGC
AGCAGAGCTGCCAGTGACACAGAACGACGAGCACGCCCGTGCCTCTCTGC
AGTTCCAGTACATCCTCCGCTCGCAAGGAGCAGCCATTTCCACGGAGTTT
TGGATGGACCCTCAGAAGGGAAGCGTTGTTCGTTCGTCGAATGCCAAGGC
ACTTTCCCGGAGCAAGTTCTCCAGCGCAGGCGATAAGGCTGTGCCTACAG
AGCTCCGCACACTGTCTTCTCCTGGCGAGGTCTTCCAAGAGATCGTCAAG
AGCCTTTGCAAGGTTGACACCTACATCGTAACTGCTCTGTGCACCTTCGA
CAGGCTCAGCAAGCACCCTTCTAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118133:25..549-

>mRNA_M-pyrifera_M_contig118133.3757.1 ID=mRNA_M-pyrifera_M_contig118133.3757.1|Name=mRNA_M-pyrifera_M_contig118133.3757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig118133:25..549- (Macrocystis pyrifera P11B4 male)
AGGAATCCCCCTCGAGTTGCCGAGAGCCTTTTGTCTCTTCTGCACACGTA
CCTGCTCCGAGAGACCAGGTCATGGAGTGTGCAGAGCAATCTCTCACGGC
GGCGAGTGCTCAACATGCTCATTCAGGCAAGGCTGCAAGAGGGGTTCGTC
ATCCTCGAGAGCTCAGGCTCAGCCCAAGGCGAGATGACAGTGACTTTTGC
AGCAGAGCTGCCAGTGACACAGAACGACGAGCACGCCCGTGCCTCTCTGC
AGTTCCAGTACATCCTCCGCTCGCAAGGAGCAGCCATTTCCACGGAGTTT
TGGATGGACCCTCAGAAGGGAAGCGTTGTTCAGGAATCCCCCTCGAGTTG
CCGAGAGCCTTTTGTCTCTTCTGCACACGTACCTGCTCCGAGAGACCAGG
TCATGGAGTGTGCAGAGCAATCTCTCACGGCGGCGAGTGCTCAACATGCT
CATTCAGGCAAGGCTGCAAGAGGGGTTCGTCATCCTCGAGAGCTCAGGCT
CAGCCCAAGGCGAGATGACAGTGACTTTTGCAGCAGAGCTGCCAGTGACA
CAGAACGACGAGCACGCCCGTGCCTCTCTGCAGTTCCAGTACATCCTCCG
CTCGCAAGGAGCAGCCATTTCCACGGAGTTTTGGATGGACCCTCAGAAGG
GAAGCGTTGTTCGCGATAAGGCTGTGCCTACAGAGCTCCGCACACTGTCT
TCTCCTGGCGAGGTCTTCCAAGAGATCGTCAAGAGCCTTTGCAAGGTTGA
CACCTACATCGTAACTGCTCTGTGCACCTTCGACAGGCTCAGCAAGCACC
CTTCTAGGGCGATAAGGCTGTGCCTACAGAGCTCCGCACACTGTCTTCTC
CTGGCGAGGTCTTCCAAGAGATCGTCAAGAGCCTTTGCAAGGTTGACACC
TACATCGTAACTGCTCTGTGCACCTTCGACAGGCTCAGCAAGCACCCTTC
TAGG
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