mRNA_M-pyrifera_M_contig118132.3756.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118132.3756.1
Unique NamemRNA_M-pyrifera_M_contig118132.3756.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7S2R6A4_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R6A4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.370e-16
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:   19 SLLADFNWEDDE--AMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVL--EGLHDEEDDGATQD 303
            SL  D  W +DE    AEI+ M  +DI+ R RLLENE R+++SE  RL HE  S K  I EN EKV LNKQ PYLVG++VE+L  E   +EE+DG+  D
Sbjct:   10 SLEDDAIWGNDENDLDAEILAMPTEDIKQRMRLLENEIRVMRSEKERLSHEENSNKERIKENLEKVKLNKQLPYLVGNIVELLSMEKDEEEEEDGSAMD 108
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A1W0A535_9STRA (26S protease regulatory subunit 6A-A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A535_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-14
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 MTSSASSLLADFNWEDDEAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLH-DEEDDGATQD 303
            MT +  SL     W D E   EI++M  D+++ R RLL+NE R+++S+  R+ HE +SQ+  I EN EKV LNKQ PYLVG+VVE+LE  + D+E DGA  D
Sbjct:  353 MTKTEGSLEGGDIWGDIEP--EILSMTTDELKQRMRLLDNEIRIMRSDITRINHESQSQRERIKENNEKVKLNKQLPYLVGNVVEILEMENEDDEQDGAATD 452
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A2R5GPJ9_9STRA (26S proteasome regulatory subunit 6A-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPJ9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.290e-14
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   40 WEDD--EAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEED--DGATQD 303
            W DD  E  AEI++M  DDI+ R RLLENE R+++SE +RL HE  SQ     EN EK+ +NKQ P+LVG++VE+L+G  DE +  DG+  D
Sbjct:   12 WGDDGEELDAEIMSMPTDDIKQRIRLLENEIRVMRSEKDRLEHEEHSQTERTKENLEKIKMNKQLPWLVGNIVEILDGETDETETEDGSAVD 103
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A4P9Y511_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y511_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 3.130e-14
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:   40 WEDDEAMAEIVNMAPD-------DIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLE--GLHDEEDDGATQD 303
            WE+D  M ++ N A +       DI  RAR+L+NE ++++SE NRLLHE  + +  + +NKEKV LNKQ PYLVG++VE+L+      EE+DGA  D
Sbjct:   10 WENDAEMGDLANWADEVQNSSVEDINNRARMLDNEIKIMRSEHNRLLHEQGTMQQQVKDNKEKVRLNKQLPYLVGNLVEILDMDPTEAEEEDGAATD 106
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7S4BN40_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BN40_CHRCT)

HSP 1 Score: 74.7 bits (182), Expect = 4.220e-14
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   46 DDEAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEE--DDGATQD 303
            +DE   EI    PD+I  R R+LENE ++L++E+ RLLHE +SQK  I EN +K+ LNKQ PYLV +VVE+L+   +EE  +DGA  D
Sbjct:   16 EDELGEEIARADPDEIAQRTRMLENEVKVLRNETARLLHEHQSQKEKIKENNDKIKLNKQLPYLVANVVELLDMNAEEEPEEDGANID 103
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7S2UXQ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.330e-14
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   40 WEDD--EAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLE-GLHDEED-DGATQD 303
            W +D  E   EI+ M+ +++R R RLL+N+ R+++S+  R+ HE  +Q+  I EN +K+ LNKQ PYLVG+VVE+LE G  DEE+ DGA QD
Sbjct:   12 WGEDGEEIDQEILQMSTEELRQRIRLLDNDIRIMRSDMQRINHETNTQREKIKENNDKIKLNKQLPYLVGNVVEILELGQEDEEEEDGAAQD 103
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7S4BN28_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BN28_CHRCT)

HSP 1 Score: 74.7 bits (182), Expect = 5.040e-14
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   46 DDEAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEE--DDGATQD 303
            +DE   EI    PD+I  R R+LENE ++L++E+ RLLHE +SQK  I EN +K+ LNKQ PYLV +VVE+L+   +EE  +DGA  D
Sbjct:   16 EDELGEEIARADPDEIAQRTRMLENEVKVLRNETARLLHEHQSQKEKIKENNDKIKLNKQLPYLVANVVELLDMNAEEEPEEDGANID 103
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A2D4BEW0_PYTIN (26S protease regulatory subunit 6A like A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEW0_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 7.410e-14
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   16 SSLLADFNWED--DEAMA--------EIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEED--DGATQD 303
            S+L  + NW D  D A A        EI+ M+ ++IR R RLL+NE R+++S+  R+ HE  +Q+  I EN EKV LNKQ PYLVG+VVE+LE L D+ED  DGA  D
Sbjct:    2 SNLETNVNWGDNGDAAAAAAAEGLDPEILIMSNEEIRQRMRLLDNEVRIMRSDVQRINHESNTQRERIKENNEKVKLNKQLPYLVGNVVEILE-LEDDEDEQDGAATD 108
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7S4F3Q6_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3Q6_CHRCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-13
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   46 DDEAMAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEE--DDGATQD 303
            +DE   EI    PD+I  R R+LENE ++L++E+ RLLHE +SQK  I EN +K+ LNKQ PYLV +VVE+L+   +EE  +DGA  D
Sbjct:   44 EDELGEEIARADPDEIAQRTRMLENEVKVLRNETARLLHEHQSQKEKIKENNDKIKLNKQLPYLVANVVELLDMNAEEEPEEDGANID 131
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BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Match: A0A7R9TG58_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TG58_MICPS)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-13
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   58 MAEIVNMAPDDIRARARLLENEARMLQSESNRLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLE--GLHDEEDDGATQD 303
            M E+ +   +DI  RARLLENE R+L+ ESNRL  +++  K  + EN EK+ +NKQ PYLVG+VVE+L+     +EEDDGA  D
Sbjct:   17 MKELEDSTAEDINMRARLLENEIRVLRDESNRLALDLQGDKERVKENMEKIKMNKQLPYLVGNVVEILDLKPEEEEEDDGANVD 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118132.3756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R6A4_9STRA3.370e-1652.53Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A1W0A535_9STRA1.400e-1449.0226S protease regulatory subunit 6A-A n=1 Tax=Thrau... [more]
A0A2R5GPJ9_9STRA2.290e-1451.0926S proteasome regulatory subunit 6A-like n=1 Tax=... [more]
A0A4P9Y511_9FUNG3.130e-1446.39P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4BN40_CHRCT4.220e-1451.14Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2UXQ0_9STRA4.330e-1448.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4BN28_CHRCT5.040e-1451.14Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2D4BEW0_PYTIN7.410e-1449.0726S protease regulatory subunit 6A like A n=1 Tax=... [more]
A0A7S4F3Q6_CHRCT1.080e-1351.14Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]
A0A7R9TG58_MICPS1.660e-1351.19Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118132contigM-pyrifera_M_contig118132:13..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.0
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog3880.AES61397
Preferred nameRPT5A
KEGG koko:K03065
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001678,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009553,GO:0009555,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019941,GO:0022624,GO:0023052,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033500,GO:0033554,GO:0034284,GO:0034976,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042592,GO:0042593,GO:0042623,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043632,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045935,GO:0045944,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0055082,GO:0060255,GO:0060260,GO:0060261,GO:0061136,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGs37IG0@33090,3GD26@35493,4JECC@91835,COG1222@1,KOG0652@2759
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons1
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.7860856-CDS-M-pyrifera_M_contig118132:12..3151622815700.7860856-CDS-M-pyrifera_M_contig118132:12..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118132 13..315 -
1692277528.4935546-CDS-M-pyrifera_M_contig118132:12..3151692277528.4935546-CDS-M-pyrifera_M_contig118132:12..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118132 13..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118132.3756.1prot_M-pyrifera_M_contig118132.3756.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118132 13..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118132.3756.1

>prot_M-pyrifera_M_contig118132.3756.1 ID=prot_M-pyrifera_M_contig118132.3756.1|Name=mRNA_M-pyrifera_M_contig118132.3756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MTSSASSLLADFNWEDDEAMAEIVNMAPDDIRARARLLENEARMLQSESN
RLLHEIKSQKALIDENKEKVNLNKQTPYLVGHVVEVLEGLHDEEDDGATQ
D
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mRNA from alignment at M-pyrifera_M_contig118132:13..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118132.3756.1 ID=mRNA_M-pyrifera_M_contig118132.3756.1|Name=mRNA_M-pyrifera_M_contig118132.3756.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig118132:13..315- (Macrocystis pyrifera P11B4 male)
ATGACGTCCTCGGCCAGCTCACTGCTGGCGGATTTCAACTGGGAGGACGA
CGAGGCGATGGCGGAGATCGTGAACATGGCGCCAGACGACATCAGGGCTC
GTGCACGCCTCCTCGAGAACGAGGCGCGCATGCTCCAGTCCGAGTCCAAC
CGCTTGCTCCACGAGATCAAGTCGCAGAAGGCGCTGATCGACGAGAACAA
GGAGAAGGTCAACCTCAACAAGCAGACGCCCTACCTCGTCGGCCACGTCG
TCGAGGTGCTCGAGGGCCTCCACGACGAAGAGGACGACGGCGCCACCCAG
GAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118132:13..315-

>mRNA_M-pyrifera_M_contig118132.3756.1 ID=mRNA_M-pyrifera_M_contig118132.3756.1|Name=mRNA_M-pyrifera_M_contig118132.3756.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig118132:13..315- (Macrocystis pyrifera P11B4 male)
ATGACGTCCTCGGCCAGCTCACTGCTGGCGGATTTCAACTGGGAGGACGA
CGAGGCGATGGCGGAGATCGTGAACATGGCGCCAGACGACATCAGGGCTC
GTGCACGCCTCCTCGAGAACGAGGCGCGCATGCTCCAGTCCGAGTCCAAC
CGCTTGCTCCACGAGATCAAGTCGCAGAAGGCGCTGATCGACGAGAACAA
GGAGAAGGTCAACCTCAACAAGCAGACGCCCTACCTCGTCGGCCACGTCG
TCGAGGTGCTCGAGGGCCTCCACGACGAAGAGGACGACGGCGCCACCCAG
GACATGACGTCCTCGGCCAGCTCACTGCTGGCGGATTTCAACTGGGAGGA
CGACGAGGCGATGGCGGAGATCGTGAACATGGCGCCAGACGACATCAGGG
CTCGTGCACGCCTCCTCGAGAACGAGGCGCGCATGCTCCAGTCCGAGTCC
AACCGCTTGCTCCACGAGATCAAGTCGCAGAAGGCGCTGATCGACGAGAA
CAAGGAGAAGGTCAACCTCAACAAGCAGACGCCCTACCTCGTCGGCCACG
TCGTCGAGGTGCTCGAGGGCCTCCACGACGAAGAGGACGACGGCGCCACC
CAGGAC
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