mRNA_M-pyrifera_M_contig11809.3752.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11809.3752.1
Unique NamemRNA_M-pyrifera_M_contig11809.3752.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11809.3752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11809contigM-pyrifera_M_contig11809:1129..1661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.590354-CDS-M-pyrifera_M_contig11809:1128..16591622815700.590354-CDS-M-pyrifera_M_contig11809:1128..1659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11809 1129..1659 +
1692277528.4017265-CDS-M-pyrifera_M_contig11809:1128..16591692277528.4017265-CDS-M-pyrifera_M_contig11809:1128..1659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11809 1129..1659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.6023755-UTR-M-pyrifera_M_contig11809:1659..16611622815700.6023755-UTR-M-pyrifera_M_contig11809:1659..1661Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11809 1660..1661 +
1692277528.4100375-UTR-M-pyrifera_M_contig11809:1659..16611692277528.4100375-UTR-M-pyrifera_M_contig11809:1659..1661Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11809 1660..1661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11809.3752.1prot_M-pyrifera_M_contig11809.3752.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11809 1129..1659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11809.3752.1

>prot_M-pyrifera_M_contig11809.3752.1 ID=prot_M-pyrifera_M_contig11809.3752.1|Name=mRNA_M-pyrifera_M_contig11809.3752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
RYCRDARVYDHTTTATHDIEYTHPFPLPPELFSQFTLLLSQTSTGPVHGS
RRCSPRLRSISKRACDVSQRWSTSRTTPNSTLKQKRAKISPVKRCFYCVR
GFPSPSAGASSKRRRPHFPCETAASTCMRPGIPPPLDRLCFKKRKDAGGE
ACFSLLLPTPRKQNQPSRPLSTSRFC*
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mRNA from alignment at M-pyrifera_M_contig11809:1129..1661+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11809.3752.1 ID=mRNA_M-pyrifera_M_contig11809.3752.1|Name=mRNA_M-pyrifera_M_contig11809.3752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=533bp|location=Sequence derived from alignment at M-pyrifera_M_contig11809:1129..1661+ (Macrocystis pyrifera P11B4 male)
CGATATTGTAGGGACGCGCGGGTCTATGATCATACGACCACGGCCACACA
TGATATCGAGTACACACACCCCTTCCCCCTCCCTCCTGAGCTATTTAGTC
AATTTACGCTTCTCCTTTCACAGACTTCTACAGGGCCGGTTCATGGCTCC
CGACGCTGTTCGCCCCGTCTGCGCTCCATCTCCAAAAGGGCCTGTGACGT
CAGCCAGCGCTGGAGCACCTCCCGCACGACTCCCAACTCTACTCTAAAAC
AAAAACGGGCAAAAATATCACCCGTCAAGCGCTGCTTCTACTGCGTGCGG
GGATTTCCATCCCCCTCTGCAGGCGCTTCTTCCAAAAGGCGCCGGCCACA
TTTTCCTTGTGAAACCGCTGCTTCTACGTGTATGCGACCGGGCATCCCCC
CTCCCCTCGACAGGCTCTGCTTTAAAAAAAGAAAAGATGCGGGGGGGGAG
GCGTGTTTCTCGCTGCTTCTGCCGACGCCACGGAAGCAAAACCAGCCCTC
CCGCCCCCTATCAACAAGCAGATTCTGCTAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11809:1129..1661+

>mRNA_M-pyrifera_M_contig11809.3752.1 ID=mRNA_M-pyrifera_M_contig11809.3752.1|Name=mRNA_M-pyrifera_M_contig11809.3752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig11809:1129..1661+ (Macrocystis pyrifera P11B4 male)
CGATATTGTAGGGACGCGCGGGTCTATGATCATACGACCACGGCCACACA
TGATATCGAGTACACACACCCCTTCCCCCTCCCTCCTGAGCTATTTAGTC
AATTTACGCTTCTCCTTTCACAGACTTCTACAGGGCCGGTTCATGGCTCC
CGACGCTGTTCGCCCCGTCTGCGCTCCATCTCCAAAAGGGCCTGTGACGT
CAGCCAGCGCTGGAGCACCTCCCGCACGACTCCCAACTCTACTCTAAAAC
AAAAACGGGCAAAAATATCACCCGTCAAGCGCTGCTTCTACTGCGTGCGG
GGATTTCCATCCCCCTCTGCAGGCGCTTCTTCCAAAAGGCGCCGGCCACA
TTTTCCTTGTGAAACCGCTGCTTCTACGTGTATGCGACCGGGCATCCCCC
CTCCCCTCGACAGGCTCTGCTTTAAAAAAAGAAAAGATGCGGGGGGGGAG
GCGTGTTTCTCGCTGCTTCTGCCGACGCCACGGAAGCAAAACCAGCCCTC
CCGCCCCCTATCAACAAGCAGATTCTGCTAGCGATATTGTAGGGACGCGC
GGGTCTATGATCATACGACCACGGCCACACATGATATCGAGTACACACAC
CCCTTCCCCCTCCCTCCTGAGCTATTTAGTCAATTTACGCTTCTCCTTTC
ACAGACTTCTACAGGGCCGGTTCATGGCTCCCGACGCTGTTCGCCCCGTC
TGCGCTCCATCTCCAAAAGGGCCTGTGACGTCAGCCAGCGCTGGAGCACC
TCCCGCACGACTCCCAACTCTACTCTAAAACAAAAACGGGCAAAAATATC
ACCCGTCAAGCGCTGCTTCTACTGCGTGCGGGGATTTCCATCCCCCTCTG
CAGGCGCTTCTTCCAAAAGGCGCCGGCCACATTTTCCTTGTGAAACCGCT
GCTTCTACGTGTATGCGACCGGGCATCCCCCCTCCCCTCGACAGGCTCTG
CTTTAAAAAAAGAAAAGATGCGGGGGGGGAGGCGTGTTTCTCGCTGCTTC
TGCCGACGCCACGGAAGCAAAACCAGCCCTCCCGCCCCCTATCAACAAGC
AGATTCTGCTAG
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