mRNA_M-pyrifera_M_contig11801.3740.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11801.3740.1
Unique NamemRNA_M-pyrifera_M_contig11801.3740.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11801.3740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11801contigM-pyrifera_M_contig11801:1660..2148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size490
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.793666-CDS-M-pyrifera_M_contig11801:1659..19891622815699.793666-CDS-M-pyrifera_M_contig11801:1659..1989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11801 1660..1989 +
1692277528.1443856-CDS-M-pyrifera_M_contig11801:1659..19891692277528.1443856-CDS-M-pyrifera_M_contig11801:1659..1989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11801 1660..1989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.8974354-UTR-M-pyrifera_M_contig11801:1989..21481622815699.8974354-UTR-M-pyrifera_M_contig11801:1989..2148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11801 1990..2148 +
1692277528.1528971-UTR-M-pyrifera_M_contig11801:1989..21481692277528.1528971-UTR-M-pyrifera_M_contig11801:1989..2148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11801 1990..2148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11801.3740.1prot_M-pyrifera_M_contig11801.3740.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11801 1660..1989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11801.3740.1

>prot_M-pyrifera_M_contig11801.3740.1 ID=prot_M-pyrifera_M_contig11801.3740.1|Name=mRNA_M-pyrifera_M_contig11801.3740.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
LFGGRIYPCRAHGRSLSRHGGGVGNHVSVGKLSESISPTETWRRVWVRGE
VGEPGWYDTGRRRCVAIVLVACWSSQAEESVLLLLAVRARWYPASVITPR
AAPAGTPAH*
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mRNA from alignment at M-pyrifera_M_contig11801:1660..2148+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11801.3740.1 ID=mRNA_M-pyrifera_M_contig11801.3740.1|Name=mRNA_M-pyrifera_M_contig11801.3740.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig11801:1660..2148+ (Macrocystis pyrifera P11B4 male)
CTGTTTGGGGGGAGAATTTATCCTTGTCGCGCTCACGGGCGAAGCTTATC
CCGACATGGGGGGGGCGTAGGAAATCACGTGAGTGTGGGAAAGCTTTCGG
AGAGCATATCACCTACGGAGACATGGAGGCGTGTCTGGGTCAGGGGAGAG
GTTGGTGAACCTGGGTGGTATGATACCGGTCGACGGCGTTGCGTTGCGAT
TGTGCTTGTGGCCTGTTGGAGCAGCCAAGCTGAAGAATCCGTTCTGTTGC
TGCTTGCTGTACGTGCCCGTTGGTATCCCGCCTCAGTGATCACTCCACGC
GCTGCGCCCGCCGGGACCCCGGCTCATTGATCACTCCGCGCGCTGTCGTG
GTTTGCTTATCATCGACAGCAGTAGTGTCACTGAGGGGGGCTGTAATGTT
TTCCCGGGCGGTTGTATACTCTTCCGTTGATGAATCTGCAGCCAAGGCAA
TCATTAATATACTTATGAATATAGTACTGCTTTAACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11801:1660..2148+

>mRNA_M-pyrifera_M_contig11801.3740.1 ID=mRNA_M-pyrifera_M_contig11801.3740.1|Name=mRNA_M-pyrifera_M_contig11801.3740.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig11801:1660..2148+ (Macrocystis pyrifera P11B4 male)
CTGTTTGGGGGGAGAATTTATCCTTGTCGCGCTCACGGGCGAAGCTTATC
CCGACATGGGGGGGGCGTAGGAAATCACGTGAGTGTGGGAAAGCTTTCGG
AGAGCATATCACCTACGGAGACATGGAGGCGTGTCTGGGTCAGGGGAGAG
GTTGGTGAACCTGGGTGGTATGATACCGGTCGACGGCGTTGCGTTGCGAT
TGTGCTTGTGGCCTGTTGGAGCAGCCAAGCTGAAGAATCCGTTCTGTTGC
TGCTTGCTGTACGTGCCCGTTGGTATCCCGCCTCAGTGATCACTCCACGC
GCTGCGCCCGCCGGGACCCCGGCTCATTGACTGTTTGGGGGGAGAATTTA
TCCTTGTCGCGCTCACGGGCGAAGCTTATCCCGACATGGGGGGGGCGTAG
GAAATCACGTGAGTGTGGGAAAGCTTTCGGAGAGCATATCACCTACGGAG
ACATGGAGGCGTGTCTGGGTCAGGGGAGAGGTTGGTGAACCTGGGTGGTA
TGATACCGGTCGACGGCGTTGCGTTGCGATTGTGCTTGTGGCCTGTTGGA
GCAGCCAAGCTGAAGAATCCGTTCTGTTGCTGCTTGCTGTACGTGCCCGT
TGGTATCCCGCCTCAGTGATCACTCCACGCGCTGCGCCCGCCGGGACCCC
GGCTCATTGA
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