mRNA_M-pyrifera_M_contig117828.3689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117828.3689.1
Unique NamemRNA_M-pyrifera_M_contig117828.3689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A356NKJ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A356NKJ7_9BACT)

HSP 1 Score: 104 bits (260), Expect = 9.370e-25
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSASSETD 354
            L++L    EDW+AL++NA R M VNPL + P+ ALAV     GD  +A+ A Q++L L+P DPA  H+ LAR L   G+ + AKRH+L+ALE+APRYR+AQ+LLL+L    S+S+  D
Sbjct:  150 LMQLTLENEDWKALRKNAERYMAVNPLVARPYEALAVACSALGDTETAIKARQTVLKLNPIDPALAHYQLARLLHDEGSPD-AKRHLLQALEEAPRYREAQKLLLSLIKNPSSSTVPD 266          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A2E7ENB5_9PLAN (Peptidase_MA_2 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7ENB5_9PLAN)

HSP 1 Score: 105 bits (261), Expect = 1.140e-23
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTL 321
            LIEL+ AR++WEA+ +NA RL+ VNP+       L   A+Q  DH   + A ++LL+++P DPA+ H+ LA  LT  G  EQAKRHVL ALE APRYR+AQRLLL L
Sbjct:  581 LIELSEARQNWEAMAQNAERLLAVNPMLILGQEKLGQAAKQLEDHERQIAAQRALLEMNPADPAAAHYELAVALTRHGELEQAKRHVLMALEXAPRYRNAQRLLLRL 687          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A7C3HVK3_9BACT (Tetratricopeptide repeat protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3HVK3_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.610e-23
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLL 312
            L ELA    DWE ++RNA R + V+PL + P+  LA+ AE  GD  +AVTA ++LL L P +PA +HF LAR L  +G D  A+RHVL+ALEDAPRYR+A RLL
Sbjct:  841 LCELAAETGDWEVVRRNAERYLAVDPLVAAPYRYLALAAENTGDATAAVTALRALLALDPANPAEIHFRLARQLHRLG-DPAARRHVLQALEDAPRYREALRLL 943          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A2D7B792_9BACT (Peptidase_MA_2 domain-containing protein n=9 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2D7B792_9BACT)

HSP 1 Score: 104 bits (259), Expect = 2.180e-23
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSASS 345
            L++L    EDW+AL++NA R M VNPL + P+ ALAV     GD  +A+ A Q++L L+P DPA  H+ LAR L   G+ + AKRH+L+ALE+APRYR+AQ+LLL+L    S+S+
Sbjct:  748 LMQLTLENEDWKALRKNAERYMAVNPLVARPYEALAVACSALGDTETAIKARQTVLKLNPIDPALAHYQLARLLHDEGSPD-AKRHLLQALEEAPRYREAQKLLLSLIKNPSSST 861          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A7V6YYZ4_9BACT (Tetratricopeptide repeat protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7V6YYZ4_9BACT)

HSP 1 Score: 102 bits (254), Expect = 1.030e-22
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSASSETDVP 360
            LIEL  AR+DW A+   A RL+ ++PL S P+ ALA    +     +A+  Y+ LL L P DPA VH+ LAR L   G  ++A+RHVL+ALE+APR+RDAQ+LLL L +    + +TD P
Sbjct:  742 LIELCMARQDWAAVTNYADRLLALHPLISLPYRALARAGAELESWDTAILGYRKLLLLDPADPADVHYQLARLLHMRGERDEARRHVLQALEEAPRFRDAQKLLLQLASAAPTTGKTDSP 861          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: UPI0019A0A53C (Tetratricopeptide repeat protein n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=UPI0019A0A53C)

HSP 1 Score: 101 bits (251), Expect = 2.600e-22
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTL 321
            L++L++ RE+W A+   A RL+ VNPL + PH ALA  A   G    A+TAY++LL L+P DP  VH+ LAR L A G +  AKRHVL+ALE+APRYR+AQ+LLL +
Sbjct:  737 LLQLSQLRENWTAVTNYAERLLAVNPLIALPHRALARAATVLGKPDEAITAYRALLLLNPPDPVDVHYQLARLLHARG-EATAKRHVLQALEEAPRYREAQQLLLEI 842          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A368KPD9_9BACT (Tetratricopeptide repeat protein n=2 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KPD9_9BACT)

HSP 1 Score: 101 bits (251), Expect = 2.620e-22
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSA-----SSETDVPLSAEP-ESSDT 390
            L EL   +EDW+A+  +A R++ VNPLT  PH   A   EQ GD   A+   Q+L  + P DPA +H+ +A  L      EQA+RHVL ALE+APRYRDA +LLL+L  I+ +     SS    P  ++P E SDT
Sbjct:  768 LAELHAEQEDWQAVVVDAKRILAVNPLTPEPHQWFARAGEQIGDRDVAIEGLQTLTQMDPYDPADIHYRVALLLKEAEQPEQARRHVLLALEEAPRYRDAHKLLLSLVEIEESPPPETSSPKATPAGSQPTEKSDT 903          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A2E7DBM0_9PLAN (Peptidase_MA_2 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7DBM0_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 2.630e-22
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSA 339
            L+E+ RA+E W+ + +NA RL+ VNPL   PH A+AV AE+ G    A+ AY+++L +  +D A +HF LA HL     D  +KRHVL ALE+APRYR+A +LLL + + + A
Sbjct:  841 LLEIHRAKESWDDVFKNADRLLAVNPLLPQPHQAMAVAAEKIGKPLDAIQAYRTMLQMDADDLAGIHFNLA-HLLHDQKDPASKRHVLMALEEAPRYREAHKLLLKIVSEEKA 952          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A2E6TBN8_9BACT (Peptidase_MA_2 domain-containing protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E6TBN8_9BACT)

HSP 1 Score: 100 bits (249), Expect = 4.830e-22
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLL 315
            LIEL    EDWEA++ NA R + VNPL   P+  LA++AE +G   +AV +++++L L P DPA  HF LAR L      ++AKRH+L ALE+APR+R A RLLL
Sbjct:  730 LIELGEXAEDWEAVRTNAERCLAVNPLLPRPYRHLALVAEXQGRDXAAVESWETVLKLDPEDPAEAHFHLAR-LLKPNEQDKAKRHLLMALEEAPRFRQAHRLLL 833          
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Match: A0A2S8F9X1_9BACT (Peptidase_MA_2 domain-containing protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F9X1_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 1.660e-21
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVTAYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDAQRLLLTLTNIDSASSETDVPLSAEP 375
            L EL   +E+W+A+  +A R++ VNPLT  PH  LA   E+  D   A+   Q+L  + P DPA VH+ +A  L   G  ++A+RHVL ALE+APRYRDA +LLL+LT    A   +D P +  P
Sbjct:  597 LAELHTDQENWQAVVVDAKRILAVNPLTPEPHQLLAQAGERLEDREVAIEGLQTLTRMDPYDPADVHYRVALLLQQTGKLDEARRHVLLALEEAPRYRDAHKLLLSLTQPSDAPLTSDSPAATNP 721          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117828.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356NKJ7_9BACT9.370e-2550.00Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A2E7ENB5_9PLAN1.140e-2353.27Peptidase_MA_2 domain-containing protein n=1 Tax=P... [more]
A0A7C3HVK3_9BACT1.610e-2354.81Tetratricopeptide repeat protein n=1 Tax=Verrucomi... [more]
A0A2D7B792_9BACT2.180e-2350.43Peptidase_MA_2 domain-containing protein n=9 Tax=V... [more]
A0A7V6YYZ4_9BACT1.030e-2247.50Tetratricopeptide repeat protein n=1 Tax=Verrucomi... [more]
UPI0019A0A53C2.600e-2253.27Tetratricopeptide repeat protein n=1 Tax=Akkermans... [more]
A0A368KPD9_9BACT2.620e-2244.85Tetratricopeptide repeat protein n=2 Tax=Blastopir... [more]
A0A2E7DBM0_9PLAN2.630e-2246.90Peptidase_MA_2 domain-containing protein n=1 Tax=P... [more]
A0A2E6TBN8_9BACT4.830e-2250.48Peptidase_MA_2 domain-containing protein n=1 Tax=O... [more]
A0A2S8F9X1_9BACT1.660e-2144.00Peptidase_MA_2 domain-containing protein n=2 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117828contigM-pyrifera_M_contig117828:157..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.6
Seed ortholog evalue2.3e-18
Seed eggNOG ortholog886293.Sinac_0407
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
EggNOG OGs2IWTH@203682,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.360817-CDS-M-pyrifera_M_contig117828:156..5521622815696.360817-CDS-M-pyrifera_M_contig117828:156..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117828 157..552 -
1692277526.2765481-CDS-M-pyrifera_M_contig117828:156..5521692277526.2765481-CDS-M-pyrifera_M_contig117828:156..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117828 157..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117828.3689.1prot_M-pyrifera_M_contig117828.3689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117828 157..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117828.3689.1

>prot_M-pyrifera_M_contig117828.3689.1 ID=prot_M-pyrifera_M_contig117828.3689.1|Name=mRNA_M-pyrifera_M_contig117828.3689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
LIELARAREDWEALQRNASRLMGVNPLTSHPHAALAVIAEQEGDHASAVT
AYQSLLDLSPNDPASVHFGLARHLTAIGNDEQAKRHVLRALEDAPRYRDA
QRLLLTLTNIDSASSETDVPLSAEPESSDTE*
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mRNA from alignment at M-pyrifera_M_contig117828:157..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117828.3689.1 ID=mRNA_M-pyrifera_M_contig117828.3689.1|Name=mRNA_M-pyrifera_M_contig117828.3689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig117828:157..552- (Macrocystis pyrifera P11B4 male)
CTGATCGAACTGGCAAGAGCACGAGAAGATTGGGAGGCACTTCAGCGCAA TGCCAGCCGGTTGATGGGCGTCAATCCCCTGACGTCTCATCCTCACGCTG CCCTCGCAGTCATCGCAGAGCAAGAGGGAGATCACGCCTCTGCTGTCACT GCGTATCAATCTTTGCTCGATCTGTCACCCAACGATCCTGCATCGGTGCA CTTCGGCTTAGCCCGGCATCTCACTGCCATCGGCAACGACGAACAAGCGA AACGGCACGTTCTCCGGGCGCTCGAAGACGCCCCCCGCTATCGAGACGCC CAACGGCTGTTGTTGACCCTTACGAACATCGACTCTGCATCAAGTGAAAC TGACGTGCCACTCTCTGCAGAACCTGAATCAAGTGACACAGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117828:157..552-

>mRNA_M-pyrifera_M_contig117828.3689.1 ID=mRNA_M-pyrifera_M_contig117828.3689.1|Name=mRNA_M-pyrifera_M_contig117828.3689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig117828:157..552- (Macrocystis pyrifera P11B4 male)
CTGATCGAACTGGCAAGAGCACGAGAAGATTGGGAGGCACTTCAGCGCAA
TGCCAGCCGGTTGATGGGCGTCAATCCCCTGACGTCTCATCCTCACGCTG
CCCTCGCAGTCATCGCAGAGCAAGAGGGAGATCACGCCTCTGCTGTCACT
GCGTATCAATCTTTGCTCGATCTGTCACCCAACGATCCTGCATCGGTGCA
CTTCGGCTTAGCCCGGCATCTCACTGCCATCGGCAACGACGAACAAGCGA
AACGGCACGTTCTCCGGGCGCTCGAAGACGCCCCCCGCTATCGAGACGCC
CAACGGCTGTTGTTGACCCTTACGAACATCGACTCTGCATCAAGTGAAAC
TGACGTGCCACTCTCTGCAGAACCTGAATCAAGTGACACAGAGTGACTGA
TCGAACTGGCAAGAGCACGAGAAGATTGGGAGGCACTTCAGCGCAATGCC
AGCCGGTTGATGGGCGTCAATCCCCTGACGTCTCATCCTCACGCTGCCCT
CGCAGTCATCGCAGAGCAAGAGGGAGATCACGCCTCTGCTGTCACTGCGT
ATCAATCTTTGCTCGATCTGTCACCCAACGATCCTGCATCGGTGCACTTC
GGCTTAGCCCGGCATCTCACTGCCATCGGCAACGACGAACAAGCGAAACG
GCACGTTCTCCGGGCGCTCGAAGACGCCCCCCGCTATCGAGACGCCCAAC
GGCTGTTGTTGACCCTTACGAACATCGACTCTGCATCAAGTGAAACTGAC
GTGCCACTCTCTGCAGAACCTGAATCAAGTGACACAGAGTGA
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