mRNA_M-pyrifera_M_contig117765.3665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117765.3665.1
Unique NamemRNA_M-pyrifera_M_contig117765.3665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: L8GZS8_ACACA (Ubox domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZS8_ACACA)

HSP 1 Score: 89.0 bits (219), Expect = 6.970e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 ATVVFVSFLDKPG-KGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAI 204
            A +VFVSFL+ PG KGRMV+SLENLGI+PLQFRLD+ RPDLTKV  LLG+L++E   FPV  + +A A+
Sbjct:  526 AKIVFVSFLENPGEKGRMVKSLENLGIVPLQFRLDSHRPDLTKVDTLLGLLASECSFFPVQVDAVAQAL 594          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A7S4KE33_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KE33_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 6.290e-13
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 ATVVFVSFL-DKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFP 174
            A +VF+SFL D   KGRMV++LE+ GI+PLQF+LD+ RPDLTK+  +LG+LS+E+  FP
Sbjct:  531 ARLVFISFLEDLKVKGRMVQALESFGIVPLQFKLDSKRPDLTKMDSVLGILSSESNVFP 589          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: UPI001B88D569 (uncharacterized protein LOC121369645 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D569)

HSP 1 Score: 65.5 bits (158), Expect = 1.260e-10
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 ATVVFVSFL-DKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEHGLRCIVEE 237
            A +VFVSFL  +   G+MV++L ++GI PLQF++D +RPDL+K+  L G+LSTE  +F    +++   I   GL+ + EE
Sbjct:  502 AKLVFVSFLRSQHSNGQMVQALRDVGINPLQFKMDGSRPDLSKLDNLFGLLSTEAESFTDEISDMEDKIRLKGLQGVFEE 581          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: UPI0018D78A92 (uncharacterized protein LOC119745626 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D78A92)

HSP 1 Score: 65.1 bits (157), Expect = 1.710e-10
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 ATVVFVSFL-DKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEHGLRCIVE 234
            A +VFVSFL  +   G+MV +L  LG  PLQF+L  +RPDL K+G LLG+LS ET  F      L   I + GLR  +E
Sbjct:  498 AKLVFVSFLHSQNATGQMVGALNKLGYHPLQFKLSNSRPDLVKLGNLLGLLSKETAGFADDVAALEKEIQDEGLRKALE 576          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A210Q1N3_MIZYE (Serine/arginine repetitive matrix protein 2 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q1N3_MIZYE)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 ATVVFVSFLDKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEH 213
            A +VFVSFLD+  KG M   L+  G  PLQF LDA RPDLTK+  L G+L++E+ +F    + L + I  H
Sbjct:  654 ARLVFVSFLDQHEKGYMCTQLKKKGFNPLQFVLDARRPDLTKLEKLFGILASESKSFTEELSILQSKITGH 724          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A8B7XMT0_ACAPL (uncharacterized protein LOC110974636 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XMT0_ACAPL)

HSP 1 Score: 62.4 bits (150), Expect = 1.520e-9
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 ATVVFVSFLDKPGK-GRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEHGLRCIVE 234
            A +VFVSFL+     G MVR LE+L   PLQF+L   RPDL KVG LLG L+ ET  F      +   I   GLR  +E
Sbjct:  489 AKLVFVSFLNSQNATGHMVRLLESLDFHPLQFKLSHHRPDLVKVGNLLGKLTKETAGFADEVGAMEEEIRADGLRKAME 567          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: UPI00145514C6 (uncharacterized protein LOC117296910 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145514C6)

HSP 1 Score: 62.4 bits (150), Expect = 1.520e-9
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 ATVVFVSFLDKPG-KGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEHGLRCIVE 234
            A +VFVSFL      G+MV++L    I PLQF+LD +RPDL K+G LLG+LS+E V F      L   I + GL+  +E
Sbjct:  488 AKLVFVSFLHNQHLTGQMVKALLAKDITPLQFKLDNSRPDLVKLGNLLGLLSSEAVGFSEEVGTLEKEIVDVGLQKAIE 566          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A8J4PNL9_9MYCE (VWFA domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PNL9_9MYCE)

HSP 1 Score: 57.0 bits (136), Expect = 1.260e-7
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    7 VVFVSFLDKPGK-GRMVRSL-ENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFPVLANELAAAIDEHGL 219
            +VFVSFL+   + G MV  + ENLGI PLQF+LD  RPD+TK+  ++ +LS E+ +F          +D  G+
Sbjct: 1342 LVFVSFLNNCNEDGFMVSQIQENLGITPLQFKLDKERPDVTKIDDMIAILSCESDSFVYQVESFKVMLDIFGI 1414          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A7S0J9S9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J9S9_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.770e-6
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 ATVVFVSFLDKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLG 144
            A  VFVSFL     G+M+R +E LG  P Q+R+D ARPDLTK   LLG
Sbjct:  550 ARCVFVSFLRDGEHGQMLRDMERLGFSPPQYRVDNARPDLTKFDALLG 597          
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Match: A0A7S1UMF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMF5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 ATVVFVSFLDKPGK--GRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVLSTETVAFP 174
            A   FVSF+D P    GRM  +L+  G+   +FR+D ARPDLTK+G LL +LS +    P
Sbjct:  212 ARTFFVSFIDAPPTQLGRMRSALQLRGVPSREFRMDRARPDLTKLGQLLSLLSLDEAIRP 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117765.3665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
L8GZS8_ACACA6.970e-1965.22Ubox domain containing protein n=1 Tax=Acanthamoeb... [more]
A0A7S4KE33_9EUKA6.290e-1359.32Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
UPI001B88D5691.260e-1043.75uncharacterized protein LOC121369645 n=1 Tax=Gigan... [more]
UPI0018D78A921.710e-1048.10uncharacterized protein LOC119745626 n=1 Tax=Patir... [more]
A0A210Q1N3_MIZYE1.130e-947.89Serine/arginine repetitive matrix protein 2 n=2 Ta... [more]
A0A8B7XMT0_ACAPL1.520e-948.10uncharacterized protein LOC110974636 n=1 Tax=Acant... [more]
UPI00145514C61.520e-946.84uncharacterized protein LOC117296910 n=1 Tax=Aster... [more]
A0A8J4PNL9_9MYCE1.260e-742.47VWFA domain-containing protein n=1 Tax=Polysphondy... [more]
A0A7S0J9S9_9EUKA2.770e-656.25Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1UMF5_9STRA1.240e-546.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117765contigM-pyrifera_M_contig117765:3..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.3
Seed ortholog evalue9e-10
Seed eggNOG ortholog7739.XP_002588043.1
Hectar predicted targeting categoryother localisation
EggNOG OGs29502@1,2RBXQ@2759,39Y0J@33154,3B9XN@33208,3D5XH@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.0120752-CDS-M-pyrifera_M_contig117765:2..2391622815695.0120752-CDS-M-pyrifera_M_contig117765:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117765 3..239 +
1692277525.528073-CDS-M-pyrifera_M_contig117765:2..2391692277525.528073-CDS-M-pyrifera_M_contig117765:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117765 3..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117765.3665.1prot_M-pyrifera_M_contig117765.3665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117765 3..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117765.3665.1

>prot_M-pyrifera_M_contig117765.3665.1 ID=prot_M-pyrifera_M_contig117765.3665.1|Name=mRNA_M-pyrifera_M_contig117765.3665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
ATVVFVSFLDKPGKGRMVRSLENLGIIPLQFRLDAARPDLTKVGPLLGVL
STETVAFPVLANELAAAIDEHGLRCIVEE
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mRNA from alignment at M-pyrifera_M_contig117765:3..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117765.3665.1 ID=mRNA_M-pyrifera_M_contig117765.3665.1|Name=mRNA_M-pyrifera_M_contig117765.3665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig117765:3..239+ (Macrocystis pyrifera P11B4 male)
GCGACGGTTGTGTTCGTGTCTTTCTTGGACAAGCCAGGCAAGGGGCGCAT GGTGCGTTCGCTGGAGAACCTGGGGATTATCCCTCTCCAGTTCCGCCTGG ATGCGGCAAGGCCAGACTTGACGAAGGTCGGCCCCCTCCTGGGAGTGCTG AGCACGGAGACTGTTGCATTCCCTGTGCTCGCGAACGAGCTCGCGGCAGC CATCGACGAGCACGGCCTCCGCTGCATCGTAGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117765:3..239+

>mRNA_M-pyrifera_M_contig117765.3665.1 ID=mRNA_M-pyrifera_M_contig117765.3665.1|Name=mRNA_M-pyrifera_M_contig117765.3665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig117765:3..239+ (Macrocystis pyrifera P11B4 male)
GCGACGGTTGTGTTCGTGTCTTTCTTGGACAAGCCAGGCAAGGGGCGCAT
GGTGCGTTCGCTGGAGAACCTGGGGATTATCCCTCTCCAGTTCCGCCTGG
ATGCGGCAAGGCCAGACTTGACGAAGGTCGGCCCCCTCCTGGGAGTGCTG
AGCACGGAGACTGTTGCATTCCCTGTGCTCGCGAACGAGCTCGCGGCAGC
CATCGACGAGCACGGCCTCCGCTGCATCGTAGAGGAGGCGACGGTTGTGT
TCGTGTCTTTCTTGGACAAGCCAGGCAAGGGGCGCATGGTGCGTTCGCTG
GAGAACCTGGGGATTATCCCTCTCCAGTTCCGCCTGGATGCGGCAAGGCC
AGACTTGACGAAGGTCGGCCCCCTCCTGGGAGTGCTGAGCACGGAGACTG
TTGCATTCCCTGTGCTCGCGAACGAGCTCGCGGCAGCCATCGACGAGCAC
GGCCTCCGCTGCATCGTAGAGGAG
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