mRNA_M-pyrifera_M_contig117686.3653.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A3D3RE00_9PLAN (Very short patch repair endonuclease n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RE00_9PLAN) HSP 1 Score: 304 bits (778), Expect = 1.310e-104 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL 429
SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL
Sbjct: 11 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL 153
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A517XIZ2_9PLAN (Very short patch repair endonuclease n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XIZ2_9PLAN) HSP 1 Score: 213 bits (543), Expect = 4.340e-69 Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLL 360
SWNMSRIKNRDTKPELIVRSLL+RMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRV+FWK+KFA ++RD + L +GW +I+IWECE D++ L+ L
Sbjct: 11 SWNMSRIKNRDTKPELIVRSLLYRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVNFWKRKFADTIERDKRQQQSLRKSGWNIIVIWECECMDLELLSNKL 130
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A7X9JCX6_9BACT (Very short patch repair endonuclease n=1 Tax=Candidatus Moranbacteria bacterium TaxID=2045217 RepID=A0A7X9JCX6_9BACT) HSP 1 Score: 196 bits (498), Expect = 2.820e-62 Identity = 84/125 (67.20%), Postives = 103/125 (82.40%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESIL 375
SWNMSRI + +TKPE+IVRSLLHRMGYRFRLH KDLPGKPDIVLPKY+TVIFVHGCFWHRH GC+YAY PKSR+ FW++KF+ N++RD A +LE WKV+ +WECET ++ +L L +I+
Sbjct: 10 SWNMSRIHSGNTKPEIIVRSLLHRMGYRFRLHSKDLPGKPDIVLPKYRTVIFVHGCFWHRHTGCRYAYTPKSRISFWEEKFSRNIERDHEAKDKLEIRNWKVLTVWECETRNVQSLIAKLRTNIV 134
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: UPI000557CFA8 (DNA mismatch endonuclease Vsr n=1 Tax=Desulfobacter vibrioformis TaxID=34031 RepID=UPI000557CFA8) HSP 1 Score: 193 bits (491), Expect = 3.390e-61 Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSD 336
SWNMSRIKNRDTKPE+ VRSLLHRMGYRFRLHRKDLPGKPDIVLPKY TVIFVHGCFWHRHK C +AY PKS + FW +KF N++RD ELE+ GW V IIWECE ++
Sbjct: 10 SWNMSRIKNRDTKPEITVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYNTVIFVHGCFWHRHKNCHFAYTPKSNITFWTEKFEKNIRRDAKNKAELENLGWNVRIIWECEANN 121
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A8D5FZI0_9DELT (Very short patch repair endonuclease n=1 Tax=Desulfomarina profundi TaxID=2772557 RepID=A0A8D5FZI0_9DELT) HSP 1 Score: 192 bits (488), Expect = 6.580e-61 Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 10 MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNE 366
MSRIKNRDTKPE+IVRSLLHR GYRFRLHRKDLPGKPDIVLP+YKT+I VHGCFWHRH+GC+YAY PK+RVDFW+KKF N KRD EL GWKV ++WECET + L L +
Sbjct: 1 MSRIKNRDTKPEIIVRSLLHRAGYRFRLHRKDLPGKPDIVLPRYKTIILVHGCFWHRHEGCRYAYYPKTRVDFWQKKFRQNAKRDQKVQNELLKLGWKVCVVWECETRKPEILISKLQQ 119
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A7C5BIF2_9EURY (DNA mismatch endonuclease Vsr n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7C5BIF2_9EURY) HSP 1 Score: 191 bits (486), Expect = 1.960e-60 Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLN 363
SWNMSRI+++DT PE +VRSLLHRMGYRFRLH K LPG PDIVLPK+KTVIFVHGCFWHRH GC++AY PKSRVDFW KKF NVK A EL+ GW+V+++WEC+ S++D L R L+
Sbjct: 11 SWNMSRIRSKDTGPEKVVRSLLHRMGYRFRLHVKSLPGTPDIVLPKFKTVIFVHGCFWHRHPGCRFAYTPKSRVDFWMKKFDQNVKAHEKAVGELKEQGWRVLVVWECDLSELDLLERKLS 131
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A517YS29_9BACT (Very short patch repair endonuclease n=1 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YS29_9BACT) HSP 1 Score: 191 bits (485), Expect = 2.780e-60 Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDAL 348
SWNMSRI++++TKPELIVRSLL++MGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGC+WHRH CK AY PKS + FW+ KF+ +KRD +K+++ GW+VIIIWECET++ + L
Sbjct: 11 SWNMSRIRSKNTKPELIVRSLLYKMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCYWHRHADCKLAYKPKSHIHFWQNKFSKTIKRDRLRTKQIQDLGWRVIIIWECETANTEIL 126
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A410H2P0_9GAMM (Very short patch repair endonuclease n=1 Tax=Hydrogenovibrio thermophilus TaxID=265883 RepID=A0A410H2P0_9GAMM) HSP 1 Score: 189 bits (479), Expect = 2.510e-59 Identity = 88/124 (70.97%), Postives = 99/124 (79.84%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECET--SDIDALARLLNE 366
SWNMSRI N+DTKPELIVR LLH+ GYRFRLHRKDLPGKPD+VLPKYKTVIFVHGCFWH H+GCK A PK+R +FWKKK NVKRD + L+ GW VII+WECET S++ LARL E
Sbjct: 11 SWNMSRISNKDTKPELIVRKLLHKNGYRFRLHRKDLPGKPDLVLPKYKTVIFVHGCFWHMHEGCKDAGIPKTRTEFWKKKLEENVKRDKKNIQLLKKLGWNVIIVWECETHNSEVQLLARLGKE 134
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A350M7P4_9FLAO (Very short patch repair endonuclease n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350M7P4_9FLAO) HSP 1 Score: 187 bits (474), Expect = 1.490e-58 Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 1
Query: 1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLL 360
SWNMS IK RDTKPE+IVR +LHR+GYRFRLHRK+LPG PDIVLPKY TVIFVHGCFWHRH GC+YAY PKSRV+FW+ K N++RD S +L+ GW+V IIWECET + + L + L
Sbjct: 10 SWNMSLIKGRDTKPEMIVRKMLHRLGYRFRLHRKNLPGTPDIVLPKYNTVIFVHGCFWHRHAGCRYAYKPKSRVNFWQDKIRQNMERDRKVSLQLKELGWQVEIIWECETKNNEKLVQQL 129
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A1G0LTE6_9DELT (Very short patch repair endonuclease n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A1G0LTE6_9DELT) HSP 1 Score: 186 bits (472), Expect = 1.980e-58 Identity = 84/121 (69.42%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 10 MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESI 372
MSRIK R+TKPEL VRSLLHRMGYRFRLHR DLPGKPDIVL +Y+TVIFVHGCFWHRHK C++AY PKSR +FW KK SNV RDI +LE GW+VI +WECE D+D LA L+ +
Sbjct: 1 MSRIKGRNTKPELAVRSLLHRMGYRFRLHRADLPGKPDIVLSRYRTVIFVHGCFWHRHKDCRFAYTPKSRTEFWLKKLESNVIRDIQVKSDLELLGWRVITLWECELRDMDQLAARLDADL 121 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117686.3653.1 >prot_M-pyrifera_M_contig117686.3653.1 ID=prot_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVback to top mRNA from alignment at M-pyrifera_M_contig117686:122..553- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117686.3653.1 ID=mRNA_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig117686:122..553- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117686:122..553- >mRNA_M-pyrifera_M_contig117686.3653.1 ID=mRNA_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig117686:122..553- (Macrocystis pyrifera P11B4 male)back to top |