mRNA_M-pyrifera_M_contig117525.3632.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117525.3632.1
Unique NamemRNA_M-pyrifera_M_contig117525.3632.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117525.3632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117525contigM-pyrifera_M_contig117525:158..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.436734-CDS-M-pyrifera_M_contig117525:157..4571622815693.436734-CDS-M-pyrifera_M_contig117525:157..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117525 158..457 +
1692277524.773623-CDS-M-pyrifera_M_contig117525:157..4571692277524.773623-CDS-M-pyrifera_M_contig117525:157..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117525 158..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117525.3632.1prot_M-pyrifera_M_contig117525.3632.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117525 158..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117525.3632.1

>prot_M-pyrifera_M_contig117525.3632.1 ID=prot_M-pyrifera_M_contig117525.3632.1|Name=mRNA_M-pyrifera_M_contig117525.3632.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
GHGGRVTSLLAWRDAVVSGSLDGTVRFWSLPRGPSRRVRALCCVELSPAG
GVSSLASAMGSATVAVGTTDGRVLLLLPPTIAPLGENADFPPPQPSPHML
back to top

mRNA from alignment at M-pyrifera_M_contig117525:158..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117525.3632.1 ID=mRNA_M-pyrifera_M_contig117525.3632.1|Name=mRNA_M-pyrifera_M_contig117525.3632.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig117525:158..457+ (Macrocystis pyrifera P11B4 male)
GGCCACGGTGGGAGGGTGACGTCATTGCTGGCGTGGCGTGACGCGGTGGT
GTCTGGCAGTTTGGACGGCACGGTTCGGTTCTGGTCTTTGCCGCGGGGGC
CGTCACGACGCGTGCGGGCGCTGTGCTGCGTGGAGCTTTCTCCTGCGGGA
GGCGTGTCTAGTCTCGCCAGCGCCATGGGCAGTGCCACCGTTGCTGTGGG
CACCACCGATGGGAGGGTGCTCCTCCTCCTCCCCCCCACCATCGCCCCGC
TCGGGGAAAACGCAGACTTTCCGCCCCCACAACCCTCGCCTCACATGCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117525:158..457+

>mRNA_M-pyrifera_M_contig117525.3632.1 ID=mRNA_M-pyrifera_M_contig117525.3632.1|Name=mRNA_M-pyrifera_M_contig117525.3632.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig117525:158..457+ (Macrocystis pyrifera P11B4 male)
GGCCACGGTGGGAGGGTGACGTCATTGCTGGCGTGGCGTGACGCGGTGGT
GTCTGGCAGTTTGGACGGCACGGTTCGGTTCTGGTCTTTGCCGCGGGGGC
CGTCACGACGCGTGCGGGCGCTGTGCTGCGTGGAGCTTTCTCCTGCGGGA
GGCGTGTCTAGTCTCGCCAGCGCCATGGGCAGTGCCACCGTTGCTGTGGG
CACCACCGATGGGAGGGTGCTCCTCCTCCTCCCCCCCACCATCGCCCCGC
TCGGGGAAAACGCAGACTTTCCGCCCCCACAACCCTCGCCTCACATGCTG
GGCCACGGTGGGAGGGTGACGTCATTGCTGGCGTGGCGTGACGCGGTGGT
GTCTGGCAGTTTGGACGGCACGGTTCGGTTCTGGTCTTTGCCGCGGGGGC
CGTCACGACGCGTGCGGGCGCTGTGCTGCGTGGAGCTTTCTCCTGCGGGA
GGCGTGTCTAGTCTCGCCAGCGCCATGGGCAGTGCCACCGTTGCTGTGGG
CACCACCGATGGGAGGGTGCTCCTCCTCCTCCCCCCCACCATCGCCCCGC
TCGGGGAAAACGCAGACTTTCCGCCCCCACAACCCTCGCCTCACATGCTG
back to top