mRNA_M-pyrifera_M_contig117492.3617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117492.3617.1
Unique NamemRNA_M-pyrifera_M_contig117492.3617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: T0R548_SAPDV (Rab family, other n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R548_SAPDV)

HSP 1 Score: 166 bits (420), Expect = 6.330e-50
Identity = 75/119 (63.03%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLDDP 357
            ERF++MH SYY+ A ACILVFDVTRK TY+HL  WYKELR YCE +PCF+ ANKIDV+ EV +K F F   H L  +FVSAADGTNVV+IF++A+ AGL+YK+   DFMA++++LL++P
Sbjct:   80 ERFSSMHPSYYFGASACILVFDVTRKTTYQHLADWYKELREYCENVPCFLAANKIDVDLEVTNKKFKFAETHNLGFHFVSAADGTNVVKIFEEAIHAGLKYKKEGGDFMADVLDLLNEP 198
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A7S1GDX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDX0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.890e-49
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSD-DFMAEMMELLDD 354
            ERFA+MH SYYYRAH CIL FDVTRK TY+++  WY+ELR YCE IPC VVANKIDV+ +V  K F FP+KH LP YFVSAADGTNVV++F +A R    +K G   DF+AE++ELLD+
Sbjct:   88 ERFASMHPSYYYRAHCCILAFDVTRKSTYQNMSQWYRELRTYCESIPCIVVANKIDVDYKVTKKEFKFPKKHDLPFYFVSAADGTNVVKVFTEAARMAQAFKAGDGKDFVAEVLELLDE 206
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: D7G647_ECTSI (RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G647_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.040e-48
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLD 351
            ERF++MH SYYYRAHACI+VFDVTRK TYK+L  WY ELR Y E IPC ++ANKIDV+ +V  KSF F ++H LP +FVSAADGTNVV+ FD+AV+AG+++K+   DF+ E + LL+
Sbjct:   84 ERFSSMHPSYYYRAHACIMVFDVTRKATYKNLSDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE 200
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A6P8JD30_ACTTE (rab-like protein 2A n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8JD30_ACTTE)

HSP 1 Score: 162 bits (410), Expect = 3.890e-48
Identity = 74/117 (63.25%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLD 351
            ERF++MH SYY++AHACILVFD+TRK TYK+L +WYKELR Y + IPC VVANKIDV+ +V  K+F FP+K+GLP YFVSA+DGTNVV++F +A++ G+QYK  S DFM  +M+ L+
Sbjct:   84 ERFSSMHPSYYHQAHACILVFDITRKITYKNLANWYKELRQYRDSIPCIVVANKIDVDYKVTQKAFNFPKKYGLPFYFVSASDGTNVVKVFREAIKLGVQYKENSTDFMDMVMQELE 200
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A7RXW7_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RXW7_NEMVE)

HSP 1 Score: 162 bits (409), Expect = 5.510e-48
Identity = 74/117 (63.25%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLD 351
            ERF++MH SYY++AHAC+LVFD+TRK TYK+L +WYKELR Y + IPC VVANKIDV+ +V  KSF FP+K+GLP YFVSA+DGTNVV++F +A+R G+ YK  S DFM  +M+ L+
Sbjct:   84 ERFSSMHPSYYHQAHACLLVFDITRKITYKNLANWYKELRKYRDSIPCIVVANKIDVDYKVTQKSFNFPKKYGLPFYFVSASDGTNVVKVFREAIRLGVNYKENSTDFMDMVMQELE 200
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A8K1CGD5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD5_PYTOL)

HSP 1 Score: 161 bits (407), Expect = 5.940e-48
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELL 348
            ERF++MH SYYY A ACI+VFDVTRK TY++L  WYKELR YCE IPCF+VANKIDV+  V SK F F   H LP  FVSAADGTNVV++F DAV+A  Q+K+   DFMA++++LL
Sbjct:   81 ERFSSMHPSYYYGATACIMVFDVTRKVTYQNLTGWYKELREYCENIPCFLVANKIDVDLNVTSKKFKFSETHNLPFEFVSAADGTNVVKVFQDAVKAAYQFKKDGGDFMADVLDLL 196
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A485LJP2_9STRA (Aste57867_22144 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJP2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.840e-48
Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLDDP 357
            ERF++MHSSYY+ A ACILVFDVTRK TY+HL  WYKELR YCE IPCF+ ANK+DV+ EV +K F F   H L   FVSAADGTNVV+ F++A+ A L++K+   DFM+++M+LL++P
Sbjct:   96 ERFSSMHSSYYFGASACILVFDVTRKTTYQHLSDWYKELREYCENIPCFLAANKVDVDLEVTNKKFKFAETHSLGFNFVSAADGTNVVKTFEEAIHAALKFKKEGGDFMSDVMDLLNEP 214
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: UPI000A2A78F1 (rab-like protein 2A n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A78F1)

HSP 1 Score: 160 bits (406), Expect = 1.390e-47
Identity = 74/117 (63.25%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLD 351
            ERF++MH SYY++AHACILVFD+TRK TYK+L +WYKELR Y + IPC VVANKIDV+ +V  KSF FP+K+ LP YFVSA+DG+NVV++F +A+R G+QYK  S DFM  +M+ L+
Sbjct:   81 ERFSSMHPSYYHQAHACILVFDITRKITYKNLPNWYKELRQYRDSIPCIVVANKIDVDYKVTQKSFNFPKKYNLPFYFVSASDGSNVVKVFREAIRLGVQYKENSTDFMDMVMQELE 197
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A5A8D7J8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7J8_CAFRO)

HSP 1 Score: 161 bits (407), Expect = 2.140e-47
Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLDDP 357
            E+FA+MH SYYYRAHACILVFDVTRKPTY+HL +WY+ELR +C  IP FVVANKID+N +  +K FAF  K+ LPL + SAADGTNVVR+F +++RA  +YK   DD  A +  +LDDP
Sbjct:  101 EKFASMHPSYYYRAHACILVFDVTRKPTYQHLPNWYEELRGFCPHIPAFVVANKIDMNEKATTKRFAFATKNSLPLVYGSAADGTNVVRVFHESIRAAWRYKNHGDDLEAMLYRMLDDP 219
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BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Match: A0A6G0WRD6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRD6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.140e-47
Identity = 72/119 (60.50%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 ERFATMHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKIDVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGSDDFMAEMMELLDDP 357
            ERF +MH+SYY+ A ACILVFDVTRK TY+HL  WYKELR YCE IPCF+ ANK+DV+ EV +K F F   H L   FVSAADGTNVV++F+D + A L++K+   DFM+++++LLD+P
Sbjct:   79 ERFNSMHASYYFGASACILVFDVTRKTTYQHLADWYKELREYCESIPCFLAANKVDVDLEVTNKKFKFAETHNLSFSFVSAADGTNVVKLFEDTIHAALKHKKEGGDFMSDVLDLLDEP 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117492.3617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0R548_SAPDV6.330e-5063.03Rab family, other n=2 Tax=Saprolegniaceae TaxID=47... [more]
A0A7S1GDX0_9STRA1.890e-4964.71Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D7G647_ECTSI3.040e-4862.39RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A6P8JD30_ACTTE3.890e-4863.25rab-like protein 2A n=1 Tax=Actinia tenebrosa TaxI... [more]
A7RXW7_NEMVE5.510e-4863.25Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A8K1CGD5_PYTOL5.940e-4864.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LJP2_9STRA9.840e-4861.34Aste57867_22144 protein n=1 Tax=Aphanomyces stella... [more]
UPI000A2A78F11.390e-4763.25rab-like protein 2A n=1 Tax=Exaiptasia diaphana Ta... [more]
A0A5A8D7J8_CAFRO2.140e-4763.03Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A6G0WRD6_9STRA3.140e-4760.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117492contigM-pyrifera_M_contig117492:42..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog112098.XP_008604645.1
Preferred nameRABL2B
KEGG koko:K07883,ko:K07931,ko:K07976,ko:K17977
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000003,GO:0000131,GO:0000166,GO:0000242,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006928,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007275,GO:0007338,GO:0007399,GO:0008150,GO:0008594,GO:0009566,GO:0009653,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030317,GO:0030427,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032989,GO:0032991,GO:0035639,GO:0036064,GO:0036094,GO:0036126,GO:0040011,GO:0042073,GO:0042461,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0060271,GO:0070925,GO:0071840,GO:0097159,GO:0097223,GO:0097225,GO:0097367,GO:0097722,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04031,ko04131
Exons1
Model size357
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.77429-CDS-M-pyrifera_M_contig117492:41..3831622815692.77429-CDS-M-pyrifera_M_contig117492:41..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117492 42..383 -
1692277524.5018604-CDS-M-pyrifera_M_contig117492:41..3831692277524.5018604-CDS-M-pyrifera_M_contig117492:41..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117492 42..383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.7861671-UTR-M-pyrifera_M_contig117492:383..3981622815692.7861671-UTR-M-pyrifera_M_contig117492:383..398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117492 384..398 -
1692277524.5113542-UTR-M-pyrifera_M_contig117492:383..3981692277524.5113542-UTR-M-pyrifera_M_contig117492:383..398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117492 384..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117492.3617.1prot_M-pyrifera_M_contig117492.3617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117492 42..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117492.3617.1

>prot_M-pyrifera_M_contig117492.3617.1 ID=prot_M-pyrifera_M_contig117492.3617.1|Name=mRNA_M-pyrifera_M_contig117492.3617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MHSSYYYRAHACILVFDVTRKPTYKHLESWYKELRVYCEGIPCFVVANKI
DVNTEVVSKSFAFPRKHGLPLYFVSAADGTNVVRIFDDAVRAGLQYKRGS
DDFMAEMMELLDDP
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mRNA from alignment at M-pyrifera_M_contig117492:42..398-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117492.3617.1 ID=mRNA_M-pyrifera_M_contig117492.3617.1|Name=mRNA_M-pyrifera_M_contig117492.3617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig117492:42..398- (Macrocystis pyrifera P11B4 male)
GAGCGTTTTGCCACGATGCATTCTAGCTATTATTACCGCGCGCACGCGTG
CATTTTGGTGTTTGACGTGACTCGGAAGCCGACGTACAAGCACCTGGAGT
CTTGGTACAAGGAGCTGCGTGTGTATTGCGAGGGGATTCCGTGTTTTGTG
GTGGCGAATAAGATCGACGTGAATACGGAGGTTGTGAGCAAGTCGTTTGC
GTTTCCTCGCAAGCACGGCCTGCCGCTCTACTTTGTGTCGGCTGCCGATG
GCACCAACGTGGTTCGAATCTTCGACGACGCTGTGCGGGCAGGATTGCAG
TATAAGCGCGGCTCTGACGATTTTATGGCGGAAATGATGGAGCTGCTGGA
CGATCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117492:42..398-

>mRNA_M-pyrifera_M_contig117492.3617.1 ID=mRNA_M-pyrifera_M_contig117492.3617.1|Name=mRNA_M-pyrifera_M_contig117492.3617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig117492:42..398- (Macrocystis pyrifera P11B4 male)
ATGCATTCTAGCTATTATTACCGCGCGCACGCGTGCATTTTGGTGTTTGA
CGTGACTCGGAAGCCGACGTACAAGCACCTGGAGTCTTGGTACAAGGAGC
TGCGTGTGTATTGCGAGGGGATTCCGTGTTTTGTGGTGGCGAATAAGATC
GACGTGAATACGGAGGTTGTGAGCAAGTCGTTTGCGTTTCCTCGCAAGCA
CGGCCTGCCGCTCTACTTTGTGTCGGCTGCCGATGGCACCAACGTGGTTC
GAATCTTCGACGACGCTGTGCGGGCAGGATTGCAGTATAAGCGCGGCTCT
GACGATTTTATGGCGGAAATGATGGAGCTGCTGGACGATCCCATGCATTC
TAGCTATTATTACCGCGCGCACGCGTGCATTTTGGTGTTTGACGTGACTC
GGAAGCCGACGTACAAGCACCTGGAGTCTTGGTACAAGGAGCTGCGTGTG
TATTGCGAGGGGATTCCGTGTTTTGTGGTGGCGAATAAGATCGACGTGAA
TACGGAGGTTGTGAGCAAGTCGTTTGCGTTTCCTCGCAAGCACGGCCTGC
CGCTCTACTTTGTGTCGGCTGCCGATGGCACCAACGTGGTTCGAATCTTC
GACGACGCTGTGCGGGCAGGATTGCAGTATAAGCGCGGCTCTGACGATTT
TATGGCGGAAATGATGGAGCTGCTGGACGATCCC
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