mRNA_M-pyrifera_M_contig117436.3604.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117436.3604.1
Unique NamemRNA_M-pyrifera_M_contig117436.3604.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A8F4J6E2_9ACTN (Pyrimidine reductase family protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J6E2_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 8.730e-34
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 LSIEPTHRVFSDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            L ++PT  +F++  A P + TVT AP+ARR  L  +A+I+D G   +DL  AL  L  RG    L EGGP+LNGQ LAA L+DE ++T SP+L GGDSARAAHGP+   P D+ LA LW  D  LF R++
Sbjct:  115 LDLDPTSAMFTEATAPPVVFTVTSAPTARRQALDGLAEIVDVGDDGVDLAAALGWLADRGVATVLCEGGPSLNGQLLAAGLVDELDLTTSPLLVGGDSARAAHGPD-GEPLDVELAHLWEADGVLFARYV 243          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A7V8X1F4_9ACTN (Dihydrofolate reductase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8X1F4_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 6.130e-29
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    7 IEPTHRVFSD--PDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGP-ELATPPDLRLARLWLDDDTLFGRWI 390
            ++P  R+F+D  P  RP ++T   A   RR++LAEVA+++  G G +DL +AL AL  RG  + L EGGPTLNGQ +  DL+DEW  +++P+LAGG S R A G    A P  LRL RL  +D TLF R++
Sbjct:   49 LDPEQRLFADAHPAIRPLVLTTAAADEERRARLAEVAEVVLVGDGLVDLPLALTALAERGAGVVLCEGGPTLNGQLVQLDLVDEWCQSVAPLLAGGRSRRVAEGDGPPAGPGALRLDRLLEEDGTLFARYV 179          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A6I3HXP8_9ACTN (Pyrimidine reductase family protein n=8 Tax=root TaxID=1 RepID=A0A6I3HXP8_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 4.390e-28
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    7 IEPTHRVFSDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRW 387
            ++PT R+F +   RP ++T   AP+   + L +VAD++ AG  ++DL  A   LR +     L EGGPTLN Q LA DL+DEW  T+SP+L GG +AR AHGP + T   L+L R+ +DDD L  R+
Sbjct:  148 LDPTSRLFRNATQRPIVVTTESAPANAVAALRDVADVLIAGIDEVDLRDAFAQLRKQELTTLLCEGGPTLNNQLLADDLVDEWCQTISPILVGGTAARGAHGPAMGTANKLKLTRVVVDDDVLLLRY 274          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A2E9W1H7_9ACTN (RibD_C domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E9W1H7_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 7.250e-27
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 LSIEPTHRVF---SDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGD-IDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            L+++PT  +F      D  P I T T AP + R  L+ VA+++DAGTG  +D+ + +  L GRG  + L EGGP+LN Q +AA L+DE N+T+SP+L GG + R   GP LA P  LRL R+  DD  LF R++
Sbjct:  130 LALDPTALMFRPVGPADPPPLIYTATGAPGSARDSLSGVAEVVDAGTGSQVDVGLVVADLAGRGAGVVLAEGGPSLNHQLVAAGLVDELNLTISPLLVGGTAKRILSGPTLAAPAGLRLDRVLSDDGYLFCRYL 263          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A2E8BEP9_9ACTN (RibD_C domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8BEP9_9ACTN)

HSP 1 Score: 108 bits (271), Expect = 1.440e-26
Identity = 60/134 (44.78%), Postives = 87/134 (64.93%), Query Frame = 1
Query:    1 LSIEPTHRVFS--DP-DARPSIITVTDAPSARRSQLAEVADIIDAGTGD-IDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            LS++PT  +FS  DP D  P I T + AP      LA VA++++AG GD +++++ +  L  RG  + L+EGGP+LN Q +AA L+DE+N+T+SP+LAGG S R   GP L  P  L+L R+  DD  LF R++
Sbjct:  130 LSLDPTAMIFSPVDPADPPPLIYTASGAPGKESQALARVAEVVEAGVGDRVNINLVMADLTNRGVGVVLVEGGPSLNHQVVAAGLVDEFNLTVSPLLAGGKSKRILAGPALEMPASLKLERVLSDDGFLFCRYL 263          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A7W0KQ70_9ACTN (Pyrimidine reductase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KQ70_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.010e-25
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   25 VFSDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            +F+D    P + TVTDAP  RR  +   A+++D G   +DL   L  L  RG    L+EGGP LNGQ + A L+DE N+++SP+L GGDS+R AHG   A P  L L+ LW  DD LF R++
Sbjct:  122 LFADAAEPPLVFTVTDAPQDRRDAIVGRAEVVDMGDRLVDLPDVLGDLHERGARTVLVEGGPGLNGQLVTAGLVDELNVSVSPLLVGGDSSRLAHGVA-ARPRTLSLSHLWTADDLLFARYL 242          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: UPI001AA0C429 (pyrimidine reductase family protein n=1 Tax=Leucobacter ruminantium TaxID=1289170 RepID=UPI001AA0C429)

HSP 1 Score: 105 bits (263), Expect = 1.950e-25
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 LSIEPTHRVFSDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            L ++P   VFSD   RP + TV  AP+ RR+ LA VAD++DAG  D++    L+ L  RGH     EGGP+L G F+AAD++DE  +T++P L  GD+ R A GPE A P  +RLA +    D L  R++
Sbjct:  117 LDLDPESDVFSDAPVRPVVYTVAAAPAERRAALAAVADVVDAGERDVEPARVLDDLAARGHTHVHSEGGPSLFGSFIAADVVDELCLTVAPSLESGDARRIATGPE-AAPQRMRLAAVLRASDELLLRYV 245          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A355DDB1_9ACTN (Pyrimidine reductase family protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DDB1_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 2.420e-25
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   40 DARPSIITVTDAPSARRSQLAEVADIIDAGTGD-IDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWI 390
            D  P + T T A + RRS LA VA+++D G G+ +DL   L  L  RG  + L EGGP+LN Q +AA L+DE N+T+SP+LAGG +AR   GP+LA P  LRL R+  DD  LF R++
Sbjct:  134 DQPPLVYTSTAASADRRSALARVAELVDCGDGERVDLRRVLADLHDRGAAVVLAEGGPSLNQQLVAAGLVDELNLTVSPLLAGGTAARILSGPDLAAPVRLRLDRVLADDGFLFCRYL 251          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A840NJ49_9PSEU (5-amino-6-(5-phosphoribosylamino)uracil reductase n=2 Tax=Saccharopolyspora gloriosae TaxID=455344 RepID=A0A840NJ49_9PSEU)

HSP 1 Score: 105 bits (261), Expect = 3.710e-25
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    4 SIEPTHRVFSDPDARPSIITVTDAPSARRSQLAEV-ADIIDAGTGDIDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRL 345
            S+EP   + +D    P +IT  DAP ARR+ LA+  AD++ AGTG +DL  AL AL  RG      EGGP L G  +AADL+DE  +T+SP+LAGG + R AHGP+LA P  +RL
Sbjct:  123 SLEPDSPLLTDTVVPPIVITCADAPEARRAVLADAGADVVVAGTGGVDLTAALAALGERGLLRVGCEGGPRLFGDLVAADLVDELCLTVSPLLAGGGAGRIAHGPDLAAPHPMRL 237          
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Match: A0A2D6KKX1_9ACTN (RibD_C domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KKX1_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 8.630e-25
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 LSIEPTHRVFS--DP-DARPSIITVTDAPSARRSQLAEVADIIDAGTGD-IDLDIALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSARAAHGPELATPPDLRLARLWLDDDTLFGRWIT 393
            L+++PT  +F   DP D  P I T T APS RR  LA VA+++ AG GD +D+ + +  L  RG  + L EGGP+LN Q +AA L+DE N+T+SP+L  G + R   GP L  P  LRL R+   D  LF R++T
Sbjct:  130 LALDPTALMFRPVDPADPPPLIYTATGAPSDRRQALARVAEVVAAGDGDRVDVGMVMADLSARGVGVVLAEGGPSLNHQLVAAGLVDEVNLTISPLLVAGTARRILSGPALTAPAGLRLDRVLTADGFLFCRYLT 264          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117436.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F4J6E2_9ACTN8.730e-3450.77Pyrimidine reductase family protein n=1 Tax=Aquiha... [more]
A0A7V8X1F4_9ACTN6.130e-2947.33Dihydrofolate reductase family protein n=1 Tax=Aci... [more]
A0A6I3HXP8_9ACTN4.390e-2844.88Pyrimidine reductase family protein n=8 Tax=root T... [more]
A0A2E9W1H7_9ACTN7.250e-2744.78RibD_C domain-containing protein n=1 Tax=Actinomyc... [more]
A0A2E8BEP9_9ACTN1.440e-2644.78RibD_C domain-containing protein n=2 Tax=Acidimicr... [more]
A0A7W0KQ70_9ACTN1.010e-2545.90Pyrimidine reductase family protein n=1 Tax=Acidim... [more]
UPI001AA0C4291.950e-2544.62pyrimidine reductase family protein n=1 Tax=Leucob... [more]
A0A355DDB1_9ACTN2.420e-2549.15Pyrimidine reductase family protein n=1 Tax=Acidim... [more]
A0A840NJ49_9PSEU3.710e-2550.435-amino-6-(5-phosphoribosylamino)uracil reductase ... [more]
A0A2D6KKX1_9ACTN8.630e-2545.19RibD_C domain-containing protein n=1 Tax=Acidimicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117436contigM-pyrifera_M_contig117436:5..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.8
Seed ortholog evalue3.2e-20
Seed eggNOG ortholog1246995.AFR_34930
Preferred nameribG
KEGG rclassRC00204,RC00933
KEGG koko:K00082,ko:K11752
KEGG ReactionR03458,R03459
KEGG Pathwayko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
EggNOG free text desc.bifunctional deaminase-reductase domain protein
EggNOG OGs2GN2P@201174,4DBG0@85008,COG1985@1,COG1985@2
EC1.1.1.193,3.5.4.26
COG Functional cat.H
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.1969478-CDS-M-pyrifera_M_contig117436:4..3971622815692.1969478-CDS-M-pyrifera_M_contig117436:4..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117436 5..397 +
1692277524.269634-CDS-M-pyrifera_M_contig117436:4..3971692277524.269634-CDS-M-pyrifera_M_contig117436:4..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117436 5..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117436.3604.1prot_M-pyrifera_M_contig117436.3604.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117436 5..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117436.3604.1

>prot_M-pyrifera_M_contig117436.3604.1 ID=prot_M-pyrifera_M_contig117436.3604.1|Name=mRNA_M-pyrifera_M_contig117436.3604.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
LSIEPTHRVFSDPDARPSIITVTDAPSARRSQLAEVADIIDAGTGDIDLD
IALEALRGRGHELALLEGGPTLNGQFLAADLIDEWNMTLSPMLAGGDSAR
AAHGPELATPPDLRLARLWLDDDTLFGRWIT
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mRNA from alignment at M-pyrifera_M_contig117436:5..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117436.3604.1 ID=mRNA_M-pyrifera_M_contig117436.3604.1|Name=mRNA_M-pyrifera_M_contig117436.3604.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig117436:5..397+ (Macrocystis pyrifera P11B4 male)
CTCTCCATCGAGCCGACCCATCGGGTGTTCTCCGACCCCGACGCCCGCCC GTCGATCATCACCGTCACCGACGCCCCATCGGCACGCCGCAGCCAACTCG CCGAGGTCGCCGACATCATCGACGCCGGCACCGGCGACATCGACCTCGAC ATCGCACTCGAGGCCCTCCGGGGGCGAGGCCACGAACTTGCGCTGCTCGA GGGCGGCCCGACGCTCAACGGCCAGTTCCTCGCCGCCGACCTGATCGACG AGTGGAACATGACGCTGTCGCCGATGCTTGCCGGAGGCGACAGCGCCCGA GCGGCCCACGGCCCAGAACTCGCCACGCCGCCAGATCTGCGCCTGGCGCG CCTGTGGCTCGATGACGACACCCTGTTCGGCCGATGGATCACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117436:5..397+

>mRNA_M-pyrifera_M_contig117436.3604.1 ID=mRNA_M-pyrifera_M_contig117436.3604.1|Name=mRNA_M-pyrifera_M_contig117436.3604.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig117436:5..397+ (Macrocystis pyrifera P11B4 male)
CTCTCCATCGAGCCGACCCATCGGGTGTTCTCCGACCCCGACGCCCGCCC
GTCGATCATCACCGTCACCGACGCCCCATCGGCACGCCGCAGCCAACTCG
CCGAGGTCGCCGACATCATCGACGCCGGCACCGGCGACATCGACCTCGAC
ATCGCACTCGAGGCCCTCCGGGGGCGAGGCCACGAACTTGCGCTGCTCGA
GGGCGGCCCGACGCTCAACGGCCAGTTCCTCGCCGCCGACCTGATCGACG
AGTGGAACATGACGCTGTCGCCGATGCTTGCCGGAGGCGACAGCGCCCGA
GCGGCCCACGGCCCAGAACTCGCCACGCCGCCAGATCTGCGCCTGGCGCG
CCTGTGGCTCGATGACGACACCCTGTTCGGCCGATGGATCACGCTCTCCA
TCGAGCCGACCCATCGGGTGTTCTCCGACCCCGACGCCCGCCCGTCGATC
ATCACCGTCACCGACGCCCCATCGGCACGCCGCAGCCAACTCGCCGAGGT
CGCCGACATCATCGACGCCGGCACCGGCGACATCGACCTCGACATCGCAC
TCGAGGCCCTCCGGGGGCGAGGCCACGAACTTGCGCTGCTCGAGGGCGGC
CCGACGCTCAACGGCCAGTTCCTCGCCGCCGACCTGATCGACGAGTGGAA
CATGACGCTGTCGCCGATGCTTGCCGGAGGCGACAGCGCCCGAGCGGCCC
ACGGCCCAGAACTCGCCACGCCGCCAGATCTGCGCCTGGCGCGCCTGTGG
CTCGATGACGACACCCTGTTCGGCCGATGGATCACG
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