mRNA_M-pyrifera_M_contig117313.3582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117313.3582.1
Unique NamemRNA_M-pyrifera_M_contig117313.3582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A2E7KEC8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEC8_9PLAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.550e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE
Sbjct:  190 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 230
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A518FZ36_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FZ36_9PLAN)

HSP 1 Score: 79.0 bits (193), Expect = 8.060e-17
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            SEVI+QLQQDQGSTSP IL+ALFADGYVI PPFTWKL+EPE
Sbjct:  192 SEVIDQLQQDQGSTSPIILYALFADGYVIEPPFTWKLSEPE 232
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A517QGC1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QGC1_9PLAN)

HSP 1 Score: 79.0 bits (193), Expect = 8.060e-17
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            SEVI+QLQQDQGSTSP IL+ALFADGYVI PPFTWKL+EPE
Sbjct:  192 SEVIDQLQQDQGSTSPIILYALFADGYVIEPPFTWKLSEPE 232
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A350KKV2_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KKV2_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 7.050e-16
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            S+VI+ LQQDQ STSPTILFALFADG VIPPPFTWKL+ PE
Sbjct:   81 SKVIDHLQQDQASTSPTILFALFADGNVIPPPFTWKLSAPE 121
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A3D3RCS7_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RCS7_9PLAN)

HSP 1 Score: 74.7 bits (182), Expect = 3.770e-15
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            SEVI++L+QDQ S SPTILFALFADGYV+PPPFTWKL+ PE
Sbjct:  200 SEVIDKLEQDQTSPSPTILFALFADGYVVPPPFTWKLSAPE 240
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BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Match: A0A517V758_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V758_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.260e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE 123
            SEVI+QLQ+DQ STSPTI +ALFADG+VI PPFTWKL+EPE
Sbjct:  190 SEVIDQLQRDQASTSPTIQYALFADGHVIQPPFTWKLSEPE 230
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117313.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KEC8_9PLAN1.550e-20100.00Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518FZ36_9PLAN8.060e-1787.80Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517QGC1_9PLAN8.060e-1787.80Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A350KKV2_9PLAN7.050e-1682.93Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A3D3RCS7_9PLAN3.770e-1580.49Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517V758_9PLAN1.260e-1480.49Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117313contigM-pyrifera_M_contig117313:431..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.9752936-CDS-M-pyrifera_M_contig117313:430..5561622815690.9752936-CDS-M-pyrifera_M_contig117313:430..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117313 431..556 -
1692277523.834018-CDS-M-pyrifera_M_contig117313:430..5561692277523.834018-CDS-M-pyrifera_M_contig117313:430..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117313 431..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117313.3582.1prot_M-pyrifera_M_contig117313.3582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117313 431..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117313.3582.1

>prot_M-pyrifera_M_contig117313.3582.1 ID=prot_M-pyrifera_M_contig117313.3582.1|Name=mRNA_M-pyrifera_M_contig117313.3582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
SEVIEQLQQDQGSTSPTILFALFADGYVIPPPFTWKLNEPE*
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mRNA from alignment at M-pyrifera_M_contig117313:431..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117313.3582.1 ID=mRNA_M-pyrifera_M_contig117313.3582.1|Name=mRNA_M-pyrifera_M_contig117313.3582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig117313:431..556- (Macrocystis pyrifera P11B4 male)
TCCGAGGTAATCGAACAGCTGCAGCAGGACCAGGGCAGTACCTCACCCAC
GATCCTATTCGCCCTCTTCGCAGACGGCTACGTCATCCCGCCCCCGTTCA
CCTGGAAGCTGAACGAGCCTGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117313:431..556-

>mRNA_M-pyrifera_M_contig117313.3582.1 ID=mRNA_M-pyrifera_M_contig117313.3582.1|Name=mRNA_M-pyrifera_M_contig117313.3582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig117313:431..556- (Macrocystis pyrifera P11B4 male)
TCCGAGGTAATCGAACAGCTGCAGCAGGACCAGGGCAGTACCTCACCCAC
GATCCTATTCGCCCTCTTCGCAGACGGCTACGTCATCCCGCCCCCGTTCA
CCTGGAAGCTGAACGAGCCTGAATAATCCGAGGTAATCGAACAGCTGCAG
CAGGACCAGGGCAGTACCTCACCCACGATCCTATTCGCCCTCTTCGCAGA
CGGCTACGTCATCCCGCCCCCGTTCACCTGGAAGCTGAACGAGCCTGAAT
AA
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