mRNA_M-pyrifera_M_contig116961.3509.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A6N9GHE5_9ACTN (Permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9GHE5_9ACTN) HSP 1 Score: 264 bits (674), Expect = 1.200e-86 Identity = 139/186 (74.73%), Postives = 158/186 (84.95%), Query Frame = 1
Query: 4 LQPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFR--ESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
L+PV LD DTRGDFVVRVYQHL+ AI FAGIEA+ LNT AE +Y+++S G TWLLILGLF+VGQWI ANAAADLLNPQKQYA LFGSA +YAVLFAP+LHY FR + G T+VAAA LIT +AFAGLTVVGFVTRKDLSF+RP++MYG V A VLI+GAILFGF+LG+WFSVAMIALSG A
Sbjct: 27 LRPVVDLDADTRGDFVVRVYQHLLGAIAAFAGIEALLLNTGFAEAMYNWISGG---TWLLILGLFIVGQWIVANAAADLLNPQKQYAALFGSAALYAVLFAPLLHYFFRVADDGATSVAAAGLITALAFAGLTVVGFVTRKDLSFIRPIIMYGCVAAAVLIVGAILFGFSLGIWFSVAMIALSGAA 209
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A2D8GIK0_9ACTN (Permease n=10 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GIK0_9ACTN) HSP 1 Score: 253 bits (646), Expect = 1.230e-82 Identity = 134/186 (72.04%), Postives = 153/186 (82.26%), Query Frame = 1
Query: 4 LQPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFR--ESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
L+P LD+ TRGDFVVRVYQHL+ AIV FAGIEA+ LNTP AE +Y FV G G +WLLILG FMVGQWI ANAAADLLNPQ+QYA LFGSA +YA+LFAP+LHY FR + G T+VAAA LIT VAFAGLT+V VTRKDLSFLRP+VMYGFV A LI+GAI+FG +LGVWFSV M+AL+G A
Sbjct: 8 LRPAIELDETTRGDFVVRVYQHLLGAIVAFAGIEAVLLNTPFAEGMYKFVR-GSGFSWLLILGGFMVGQWIVANAAADLLNPQRQYAALFGSAGLYAILFAPVLHYFFRVADDGATSVAAAGLITAVAFAGLTIVAVVTRKDLSFLRPIVMYGFVAALALIVGAIVFGLSLGVWFSVGMVALTGAA 192
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A351ESM9_9ACTN (Permease (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ESM9_9ACTN) HSP 1 Score: 204 bits (520), Expect = 1.090e-63 Identity = 108/183 (59.02%), Postives = 138/183 (75.41%), Query Frame = 1
Query: 10 PVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFR-ESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
P L ++ R FV+RVYQH++AAI F IEA+F T VAE +Y+F S G WLL++GLFM GQW +NA +DL NP +QYAGLFGS+ +YAV+FAP+LH V+R + G+TV AAA+IT + FA L+ V F TRKDLSFLRP+VM+GF A +LI+GA++FGFNLGVWFSV MI L+G A
Sbjct: 1 PAVHLPEEDRAAFVMRVYQHVLAAIGAFVAIEALFFMTGVAEGIYNFFSGG---KWLLMMGLFMGGQWFVSNAVSDLGNPSRQYAGLFGSSALYAVIFAPILHIVYRVQDSGSTVQAAAVITAIGFAILSFVAFTTRKDLSFLRPLVMWGFGGAMLLIVGAVIFGFNLGVWFSVGMIVLAGAA 180
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A349B3V5_9ACTN (Permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B3V5_9ACTN) HSP 1 Score: 200 bits (509), Expect = 7.400e-62 Identity = 110/183 (60.11%), Postives = 136/183 (74.32%), Query Frame = 1
Query: 7 QPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFRE--SGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSG 549
QPVATLD + RG FV+RVYQHL+ AI F E + T +AE ++DF++ G WLLILG FMV QW+A +AA +L N QYAGLFG A A++FAP L+YVF + +G +VAAAA+IT V FAGLTVV FVTRKDLSFLRPM+M+G + A LI+ A+LFGF LG+WFSVAMIAL+G
Sbjct: 8 QPVATLDAEERGAFVIRVYQHLLLAIGAFVAFETVLFQTGIAEAMFDFLT-GASSAWLLILGAFMVIQWMATSAAHNLENEGLQYAGLFGMAAGQALIFAPFLYYVFNDPKNGSGSVAAAAVITVVGFAGLTVVAFVTRKDLSFLRPMLMWGGIAALALIVVAVLFGFQLGIWFSVAMIALAG 189
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A520Y5X3_9ACTN (Permease n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y5X3_9ACTN) HSP 1 Score: 192 bits (487), Expect = 1.850e-58 Identity = 103/183 (56.28%), Postives = 130/183 (71.04%), Query Frame = 1
Query: 10 PVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFRES-GGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
PV L + R FV RVYQH+ AA+V F IEA+ T VA + ++ GGG WLL++G MV QW A+NA DL NP +QY GLFGSAL A++FAP L YVF++S GG TV AA++TG+ FA LT +G TRKDLSFLRP+VM+GF +A +LI+ A++FG+ LG WFSVAMI LSG A
Sbjct: 15 PVIELPEIDRATFVARVYQHVAAAVVAFVAIEALLFTTGVAGSMREYFLVGGGGRWLLLMGGVMVIQWFASNAVTDLGNPPRQYVGLFGSALGQALIFAPFLSYVFQQSDGGATVLQAAVVTGLGFAMLTAIGLFTRKDLSFLRPIVMWGFGLALLLIVAAVMFGWGLGTWFSVAMIGLSGAA 197
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A2E4KE42_9ACTN (Permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4KE42_9ACTN) HSP 1 Score: 172 bits (436), Expect = 7.730e-51 Identity = 100/182 (54.95%), Postives = 127/182 (69.78%), Query Frame = 1
Query: 10 PVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVF--RESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSG 549
PVA L++ R F+V+VYQHL A+ F E ++ + AE YD V+ GG WLL+LGLFMVG WIA A+ DL N +QY GLFG A V AV+FAP L YVF RE+ G V AA+IT + FAGL++V + TR+DLSFLRP++M+G + A VLI+ A+LFG NLG WFSVAM+AL G
Sbjct: 10 PVAQLEETDRVAFMVKVYQHLGLALGAFIAFEYLYFASGFAEWTYDTVAGSGG-AWLLMLGLFMVGTWIATQASYDLENVGRQYGGLFGFAAVEAVIFAPFLFYVFNVREATGD-VWGAAVITAMGFAGLSLVAWTTRRDLSFLRPIIMWGVMGAVVLIVAALLFGANLGTWFSVAMVALMG 189
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A2E1JBM4_9ACTN (Permease n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1JBM4_9ACTN) HSP 1 Score: 172 bits (435), Expect = 1.090e-50 Identity = 97/187 (51.87%), Postives = 131/187 (70.05%), Query Frame = 1
Query: 1 TLQPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVF--RESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
T PVA L + R F+V+VYQHL AI F E +F + +A+ L++ ++ GG WLL LGLFMVG WI+ A+ DL N +QY GLF + V A++FAP L+YVF R++ G V AA+IT + FAGL++VG+VTR DLSFLRP++++G V A VLI+ A+LFG N+G WFSVAM+AL GV+
Sbjct: 7 THTPVAHLQETDRVAFMVKVYQHLALAIGAFMAFEYLFFASGIAKNLWEMLAGNGG-AWLLFLGLFMVGTWISTQASYDLENVGRQYGGLFAISAVEALIFAPFLYYVFNVRQAAGD-VWVAAIITAMGFAGLSLVGWVTRTDLSFLRPILIWGGVAAMVLIVSALLFGMNIGTWFSVAMVALMGVS 191
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A2E3JBZ5_9ACTN (Permease n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E3JBZ5_9ACTN) HSP 1 Score: 169 bits (429), Expect = 8.820e-50 Identity = 92/186 (49.46%), Postives = 125/186 (67.20%), Query Frame = 1
Query: 1 TLQPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFR-ESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSGVA 555
T PVA+L + R F+V+VYQH+ I F IE +F + +AE LY ++ GG WLL LGLFM+G W+ A+ D N +QY GLFG A V A++FAP L+YVF + V AA+ITG+ FAGL+ + TRKDLSFLRP++++G V A VLI+ A++FG N+G WFSVAM+AL G++
Sbjct: 7 TYTPVASLQESDRVAFMVKVYQHIGLCIGAFMAIEYLFFASGIAEGLYGMLAGNGG-AWLLFLGLFMLGSWMGTQASYDFDNVGRQYGGLFGIAAVEALIFAPFLYYVFNVQQAAGDVWIAAVITGMGFAGLSFTAWTTRKDLSFLRPILVWGGVAAMVLIVSALIFGLNIGTWFSVAMVALMGIS 191
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A2E3ADD2_9RHOB (Permease n=5 Tax=Bacteria TaxID=2 RepID=A0A2E3ADD2_9RHOB) HSP 1 Score: 167 bits (422), Expect = 1.010e-48 Identity = 97/182 (53.30%), Postives = 123/182 (67.58%), Query Frame = 1
Query: 10 PVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVF--RESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMYGFVVAGVLILGAILFGFNLGVWFSVAMIALSG 549
PVA L++ R F+V+VYQHL A+ F E ++ + AE YD ++ GG WLL LG+FM+G WIA A DL N +QY GLFG A V AV+FAP L YVF +ES G V AA++T + FAGL++V + TRKDLSFLRP+V +G + A LI+ AILFG NLG WFSVAM+AL G
Sbjct: 10 PVALLEETDRVAFMVKVYQHLGLALASFMAFEYLYFVSGFAEWTYDTIAGSGG-AWLLFLGIFMLGTWIATQAVYDLDNVGRQYGGLFGFAAVEAVIFAPFLFYVFNVQESTGD-VWGAAVVTAMGFAGLSLVAWTTRKDLSFLRPIVTWGVMGAXXLIVAAILFGANLGTWFSVAMVALMG 189
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Match: A0A7Y2IG73_9ACTN (Permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IG73_9ACTN) HSP 1 Score: 146 bits (368), Expect = 1.460e-40 Identity = 83/181 (45.86%), Postives = 115/181 (63.54%), Query Frame = 1
Query: 10 PVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFVSSGGGMTWLLILGLFMVGQWIAANAAADLLNPQKQYAGLFGSALVYAVLFAPMLHYVFRESGGTTVAAAALITGVAFAGLTVVGFVTRKDLSFLRPMVMY-GFVVAGVLILGAILFGFNLGVWFSVAMIALSG 549
P D+D R F++RVYQH+ A++ F E I T +A+ + +F S G G WL ++G +G ++ AA + + QYAGLFG A +Y+++FAP+L VF V AALIT V FAGLTV+G T KDLSF+RP++++ GF G+++ GAI FGF LG+ FSV MIALSG
Sbjct: 11 PAINADEDVRSAFLIRVYQHVALAVLAFVAFETILFVTGLAQGILNFFS-GNGFLWLGLIGAMYLGSTMSFKAAQRIDDVNIQYAGLFGMAAMYSIVFAPLLRSVFNADASGLVWQAALITLVGFAGLTVIGMTTSKDLSFMRPILLWAGFAALGLIVAGAI-FGFQLGIIFSVGMIALSG 189 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116961.3509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116961.3509.1 >prot_M-pyrifera_M_contig116961.3509.1 ID=prot_M-pyrifera_M_contig116961.3509.1|Name=mRNA_M-pyrifera_M_contig116961.3509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp TLQPVATLDDDTRGDFVVRVYQHLMAAIVVFAGIEAIFLNTPVAEKLYDFback to top mRNA from alignment at M-pyrifera_M_contig116961:3..557+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116961.3509.1 ID=mRNA_M-pyrifera_M_contig116961.3509.1|Name=mRNA_M-pyrifera_M_contig116961.3509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig116961:3..557+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116961:3..557+ >mRNA_M-pyrifera_M_contig116961.3509.1 ID=mRNA_M-pyrifera_M_contig116961.3509.1|Name=mRNA_M-pyrifera_M_contig116961.3509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig116961:3..557+ (Macrocystis pyrifera P11B4 male)back to top |