mRNA_M-pyrifera_M_contig116744.3469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116744.3469.1
Unique NamemRNA_M-pyrifera_M_contig116744.3469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116744.3469.1 vs. uniprot
Match: A5P932_9SPHN (DUF2807 domain-containing protein n=9 Tax=Erythrobacteraceae TaxID=335929 RepID=A5P932_9SPHN)

HSP 1 Score: 53.5 bits (127), Expect = 4.320e-6
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:    1 LGACVIAITDDGARFHTFSNYES---GPRIVGSGQHATRAVEVAPFERFVSDGSWDVELEVVEGATPALELSGDDNILDHVRIERDGGELRVRLEHGNYKMKHPLVV 312
            L AC  +I   G   HT+++++    G R VGSG  A    EV   +  V     +V   + E   P+L +  DDN+LD + +E+DGG L ++ E G Y  ++P  V
Sbjct:   51 LAACAASIALAGCS-HTYNSHDVNWVGERTVGSGTFAQEKREVGAADTLVLSAPVNVVFTMGE---PSLTVEADDNLLDSIVVEQDGGRLTIQAE-GTYTTRNPFNV 152
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BLAST of mRNA_M-pyrifera_M_contig116744.3469.1 vs. uniprot
Match: A0A1U7CSC9_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Paludisphaera borealis TaxID=1387353 RepID=A0A1U7CSC9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.430e-5
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   31 DGARFHTFSN--YESGPRIVGSGQHATRAVEVAPFERFVSDGSWDVELEVVEGATPALELSGDDNILDHVRIERDGGELRVRLEHG-NYKMKHPL 306
            DG R  T  N    S  RI+GSG  AT+  +VA F   V  GS     E+  G    +  S DDN+++H+RI ++G  L++ LE   +++ K PL
Sbjct:  421 DGGRLATLFNGFRSSNDRIIGSGVAATKVWDVADFTS-VQIGST-FRAEITRGDAFKVTTSSDDNVVEHLRIVKEGKTLKIGLEPNLSFQFKEPL 513
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BLAST of mRNA_M-pyrifera_M_contig116744.3469.1 vs. uniprot
Match: A0A1N6DTI1_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6DTI1_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 6.430e-5
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   67 SGPRIVGSGQHATRAVEVAPFERFVSDGSWDVELEVVEGATPALELSGDDNILDHVRIERDGGELRVRLEHGN-YKMKHPLVV 312
            +G  IVGSGQ  ++  E+  F     D ++    E+V G    +  + DDN+++H+R+ ++G  L++ LE    Y++K PL V
Sbjct:  463 AGGPIVGSGQLVSKTWEIIDFTEVTIDSTF--RAEIVRGDAFKVTTTTDDNLVEHLRVSKEGKTLKIGLESDRQYRLKTPLQV 543
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116744.3469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A5P932_9SPHN4.320e-633.64DUF2807 domain-containing protein n=9 Tax=Erythrob... [more]
A0A1U7CSC9_9BACT3.430e-536.84Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1N6DTI1_9BACT6.430e-532.53Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116744contigM-pyrifera_M_contig116744:9..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.2708728-CDS-M-pyrifera_M_contig116744:8..3231622815684.2708728-CDS-M-pyrifera_M_contig116744:8..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116744 9..323 -
1692277520.5744731-CDS-M-pyrifera_M_contig116744:8..3231692277520.5744731-CDS-M-pyrifera_M_contig116744:8..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116744 9..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116744.3469.1prot_M-pyrifera_M_contig116744.3469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116744 9..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116744.3469.1

>prot_M-pyrifera_M_contig116744.3469.1 ID=prot_M-pyrifera_M_contig116744.3469.1|Name=mRNA_M-pyrifera_M_contig116744.3469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
LGACVIAITDDGARFHTFSNYESGPRIVGSGQHATRAVEVAPFERFVSDG
SWDVELEVVEGATPALELSGDDNILDHVRIERDGGELRVRLEHGNYKMKH
PLVVR
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mRNA from alignment at M-pyrifera_M_contig116744:9..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116744.3469.1 ID=mRNA_M-pyrifera_M_contig116744.3469.1|Name=mRNA_M-pyrifera_M_contig116744.3469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig116744:9..323- (Macrocystis pyrifera P11B4 male)
CTCGGCGCGTGTGTCATCGCGATCACCGACGACGGCGCCCGCTTCCACAC
CTTTTCCAACTACGAGTCCGGTCCGCGGATCGTCGGCTCGGGCCAGCACG
CCACCCGCGCCGTCGAGGTCGCGCCCTTCGAGCGCTTCGTCAGCGACGGC
TCGTGGGACGTCGAGCTCGAGGTCGTCGAGGGCGCCACGCCGGCGCTCGA
GCTGAGCGGCGACGACAACATCCTCGACCACGTGCGCATCGAGCGCGACG
GCGGCGAGCTGCGCGTGCGCCTCGAGCACGGCAATTACAAGATGAAGCAC
CCGCTCGTCGTCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116744:9..323-

>mRNA_M-pyrifera_M_contig116744.3469.1 ID=mRNA_M-pyrifera_M_contig116744.3469.1|Name=mRNA_M-pyrifera_M_contig116744.3469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig116744:9..323- (Macrocystis pyrifera P11B4 male)
CTCGGCGCGTGTGTCATCGCGATCACCGACGACGGCGCCCGCTTCCACAC
CTTTTCCAACTACGAGTCCGGTCCGCGGATCGTCGGCTCGGGCCAGCACG
CCACCCGCGCCGTCGAGGTCGCGCCCTTCGAGCGCTTCGTCAGCGACGGC
TCGTGGGACGTCGAGCTCGAGGTCGTCGAGGGCGCCACGCCGGCGCTCGA
GCTGAGCGGCGACGACAACATCCTCGACCACGTGCGCATCGAGCGCGACG
GCGGCGAGCTGCGCGTGCGCCTCGAGCACGGCAATTACAAGATGAAGCAC
CCGCTCGTCGTCCGCCTCGGCGCGTGTGTCATCGCGATCACCGACGACGG
CGCCCGCTTCCACACCTTTTCCAACTACGAGTCCGGTCCGCGGATCGTCG
GCTCGGGCCAGCACGCCACCCGCGCCGTCGAGGTCGCGCCCTTCGAGCGC
TTCGTCAGCGACGGCTCGTGGGACGTCGAGCTCGAGGTCGTCGAGGGCGC
CACGCCGGCGCTCGAGCTGAGCGGCGACGACAACATCCTCGACCACGTGC
GCATCGAGCGCGACGGCGGCGAGCTGCGCGTGCGCCTCGAGCACGGCAAT
TACAAGATGAAGCACCCGCTCGTCGTCCGC
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